Wall clock time and date at job start Tue Mar 31 2020 19:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47364 * 2 1 4 4 O 1.33494 * 126.83128 * 270.10872 * 3 2 1 5 5 N 1.20661 * 113.15711 * 180.30025 * 4 3 2 6 6 C 1.30002 * 112.30424 * 359.75161 * 5 4 3 7 7 C 1.50704 * 127.34036 * 179.97438 * 6 5 4 8 8 C 1.37362 * 126.82989 * 89.99974 * 3 2 1 9 9 C 1.47393 * 128.56566 * 0.02562 * 8 3 2 10 10 O 1.21608 * 120.00238 * 269.70204 * 9 8 3 11 11 N 1.34780 * 119.99726 * 89.69658 * 9 8 3 12 12 C 1.46501 * 119.99880 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47370 * 35.00066 * 12 11 9 14 14 C 1.53003 * 109.47178 * 275.00308 * 12 11 9 15 15 C 1.53000 * 109.47101 * 155.00672 * 12 11 9 16 16 H 1.09003 * 109.49496 * 304.93197 * 15 12 11 17 17 C 1.53037 * 109.52252 * 184.85529 * 15 12 11 18 18 C 1.53047 * 109.53795 * 178.66489 * 17 15 12 19 19 C 1.52754 * 109.38378 * 61.23712 * 18 17 15 20 20 N 1.46932 * 109.01099 * 305.59147 * 19 18 17 21 21 C 1.36931 * 120.62964 * 233.58902 * 20 19 18 22 22 H 1.08002 * 120.00075 * 152.35895 * 21 20 19 23 23 C 1.38813 * 120.00120 * 332.34384 * 21 20 19 24 24 N 1.31621 * 120.00027 * 342.76454 * 23 21 20 25 25 Si 1.86800 * 120.00058 * 162.47463 * 23 21 20 26 26 H 1.48507 * 109.46810 * 84.99183 * 25 23 21 27 27 H 1.48499 * 109.47476 * 204.98927 * 25 23 21 28 28 H 1.48496 * 109.47213 * 324.99479 * 25 23 21 29 29 C 1.46924 * 118.73758 * 53.30692 * 20 19 18 30 30 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46755 * 300.00036 * 1 2 3 32 32 H 1.08994 * 109.47539 * 60.00025 * 1 2 3 33 33 H 1.09003 * 109.46755 * 239.99964 * 2 1 3 34 34 H 1.09002 * 109.47245 * 119.99960 * 2 1 3 35 35 H 1.09002 * 109.46788 * 270.00858 * 7 6 5 36 36 H 1.09002 * 109.46501 * 30.00298 * 7 6 5 37 37 H 1.08999 * 109.47187 * 150.00182 * 7 6 5 38 38 H 0.96999 * 120.00192 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47143 * 59.99761 * 14 12 11 40 40 H 1.08999 * 109.47187 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.47190 * 300.00041 * 14 12 11 42 42 H 1.09002 * 109.46301 * 298.67870 * 17 15 12 43 43 H 1.09001 * 109.46592 * 58.64626 * 17 15 12 44 44 H 1.08995 * 109.49608 * 181.31623 * 18 17 15 45 45 H 1.09006 * 109.49576 * 301.37707 * 18 17 15 46 46 H 1.08997 * 109.51067 * 185.71031 * 19 18 17 47 47 H 1.08997 * 109.43181 * 65.42668 * 19 18 17 48 48 H 0.96998 * 119.99813 * 179.72089 * 24 23 21 49 49 H 1.09004 * 109.58803 * 66.43223 * 29 20 19 50 50 H 1.08998 * 109.58539 * 186.71915 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2972 2.1759 -1.0685 5 7 2.6941 3.2791 -0.7833 6 6 2.7611 3.4623 0.5020 7 6 3.2093 4.7058 1.2260 8 6 2.3069 2.1970 1.0995 9 6 2.1834 1.8465 2.5258 10 8 1.1413 2.0576 3.1159 11 7 3.2256 1.2918 3.1760 12 6 3.1028 0.9429 4.5935 13 1 2.0872 0.6038 4.7976 14 6 3.4117 2.1725 5.4501 15 6 4.0913 -0.1751 4.9310 16 1 3.9283 -1.0193 4.2611 17 6 3.8809 -0.6239 6.3789 18 6 4.8470 -1.7648 6.7066 19 6 6.2846 -1.2705 6.5573 20 7 6.4575 -0.6999 5.2144 21 6 7.4660 -1.1343 4.3963 22 1 7.3524 -1.0800 3.3236 23 6 8.6344 -1.6442 4.9456 24 7 8.9261 -1.4082 6.2072 25 14 9.7887 -2.6720 3.8965 26 1 10.7023 -1.7762 3.1427 27 1 10.5856 -3.5694 4.7711 28 1 8.9959 -3.4874 2.9417 29 6 5.5239 0.3413 4.7637 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2843 4.6575 1.3996 36 1 2.9780 5.5820 0.6202 37 1 2.6897 4.7771 2.1815 38 1 4.0570 1.1237 2.7054 39 1 2.7075 2.9689 5.2096 40 1 3.3207 1.9127 6.5047 41 1 4.4273 2.5116 5.2460 42 1 4.0683 0.2144 7.0499 43 1 2.8549 -0.9689 6.5067 44 1 4.6806 -2.0997 7.7304 45 1 4.6764 -2.5944 6.0203 46 1 6.9724 -2.1055 6.6907 47 1 6.4849 -0.5059 7.3078 48 1 9.7405 -1.7680 6.5921 49 1 5.6609 1.2401 5.3650 50 1 5.7115 0.5711 3.7149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025619414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:56 Heat of formation + Delta-G solvation = 7.167350 kcal Electronic energy + Delta-G solvation = -30222.016866 eV Core-core repulsion = 26251.707026 eV Total energy + Delta-G solvation = -3970.309840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.95826 -41.08872 -39.48208 -36.70572 -35.84572 -35.59325 -34.66431 -32.60428 -32.25388 -31.22492 -29.83670 -29.42834 -27.20619 -26.40929 -24.98161 -24.51481 -23.85697 -22.35201 -21.54283 -20.87975 -20.13101 -19.11518 -18.77275 -18.52609 -17.51781 -17.07946 -16.80990 -16.26670 -15.91276 -15.75799 -15.53045 -15.19285 -15.04447 -14.71155 -14.62718 -14.35935 -14.26264 -14.06643 -13.94967 -13.87596 -13.65774 -13.49051 -13.30315 -13.02836 -12.76046 -12.68455 -12.57624 -12.51248 -12.29575 -12.03805 -11.95239 -11.88760 -11.68914 -11.50831 -11.40206 -11.12334 -11.03156 -10.97322 -10.49883 -10.49017 -10.16988 -8.63325 -7.84897 -5.28977 0.23754 0.81308 1.27201 1.47028 1.49396 1.57454 1.73844 2.22974 2.52438 3.06769 3.18357 3.30113 3.57159 3.71327 3.83058 3.94759 4.00813 4.06900 4.10235 4.20561 4.25968 4.37769 4.42767 4.46997 4.49471 4.55156 4.65469 4.68149 4.71918 4.77357 4.87767 4.90216 4.93662 4.98727 5.00488 5.05223 5.06954 5.16523 5.22133 5.27429 5.32177 5.37727 5.44764 5.51834 5.60321 5.70523 5.82616 6.38544 6.41833 7.03415 7.14165 7.17873 7.90258 8.40979 9.20992 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.003280 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.147437 B = 8534.396729 C = 9340.134415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.035 3.965 4 O 0.092 5.908 5 N -0.377 5.377 6 C 0.051 3.949 7 C -0.079 4.079 8 C -0.273 4.273 9 C 0.610 3.390 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.159 3.841 13 H 0.087 0.913 14 C -0.161 4.161 15 C -0.096 4.096 16 H 0.069 0.931 17 C -0.097 4.097 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.608 5.608 21 C -0.260 4.260 22 H 0.067 0.933 23 C -0.049 4.049 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.271 1.271 29 C 0.150 3.850 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.408 0.592 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.049 0.951 47 H -0.005 1.005 48 H 0.248 0.752 49 H 0.024 0.976 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.126 4.746 -8.902 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.029 4.029 4 O 0.033 5.967 5 N -0.085 5.085 6 C -0.111 4.111 7 C -0.136 4.136 8 C -0.281 4.281 9 C 0.395 3.605 10 O -0.439 6.439 11 N -0.351 5.351 12 C 0.055 3.945 13 H 0.105 0.895 14 C -0.219 4.219 15 C -0.117 4.117 16 H 0.087 0.913 17 C -0.135 4.135 18 C -0.170 4.170 19 C 0.049 3.951 20 N -0.332 5.332 21 C -0.390 4.390 22 H 0.085 0.915 23 C -0.244 4.244 24 N -0.580 5.580 25 Si 0.789 3.211 26 H -0.212 1.212 27 H -0.222 1.222 28 H -0.196 1.196 29 C 0.025 3.975 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.013 0.987 48 H 0.057 0.943 49 H 0.041 0.959 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.443 5.585 -9.458 19.774 hybrid contribution 1.453 -0.705 0.286 1.640 sum -14.990 4.880 -9.172 18.239 Atomic orbital electron populations 1.21769 0.92274 1.04155 1.02250 1.20485 0.97563 0.84086 1.06618 1.25204 0.96446 0.96829 0.84436 1.84502 1.61449 1.17535 1.33230 1.73595 1.18517 0.99365 1.17031 1.25175 0.99581 0.97400 0.88953 1.20352 1.03010 0.90716 0.99567 1.21951 1.14768 0.96272 0.95070 1.16849 0.83154 0.76541 0.83950 1.90789 1.29733 1.54853 1.68507 1.46136 1.15601 1.61466 1.11861 1.20965 0.99765 0.94781 0.79013 0.89460 1.22223 1.01791 0.97354 1.00552 1.21731 0.94860 0.96927 0.98183 0.91253 1.21415 0.99103 0.98116 0.94875 1.21940 0.96310 0.98133 1.00649 1.20520 0.93634 0.95989 0.84997 1.44258 1.31957 1.42197 1.14746 1.19476 0.93700 1.35994 0.89859 0.91507 1.25707 0.98220 1.03013 0.97483 1.70186 1.25594 1.47666 1.14540 0.85407 0.78863 0.78787 0.78069 1.21154 1.22159 1.19641 1.21123 0.88583 0.90340 0.97482 0.88855 0.93752 0.91575 0.86109 0.88079 0.88324 0.88795 0.89709 0.75539 0.92796 0.90427 0.92137 0.91794 0.90490 0.91302 0.93212 0.93221 0.98739 0.94258 0.95867 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.05 -0.72 6.38 29.85 0.19 -0.53 16 3 C 0.03 0.73 6.80 25.48 0.17 0.90 16 4 O 0.09 2.14 11.06 76.98 0.85 2.99 16 5 N -0.38 -9.60 12.01 -44.78 -0.54 -10.14 16 6 C 0.05 1.22 7.59 45.16 0.34 1.56 16 7 C -0.08 -1.44 10.49 71.24 0.75 -0.70 16 8 C -0.27 -6.62 6.24 -18.74 -0.12 -6.74 16 9 C 0.61 15.93 7.57 86.65 0.66 16.59 16 10 O -0.56 -17.94 16.77 -4.06 -0.07 -18.01 16 11 N -0.70 -16.77 5.01 -445.82 -2.23 -19.01 16 12 C 0.16 3.95 2.36 44.99 0.11 4.06 16 13 H 0.09 2.22 7.58 -2.39 -0.02 2.20 16 14 C -0.16 -3.91 8.76 71.98 0.63 -3.28 16 15 C -0.10 -2.79 2.27 -10.72 -0.02 -2.81 16 16 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -2.76 4.89 30.62 0.15 -2.61 16 18 C -0.13 -4.56 6.06 30.53 0.19 -4.37 16 19 C 0.17 8.03 5.28 86.22 0.46 8.49 16 20 N -0.61 -28.70 3.00 -699.93 -2.10 -30.80 16 21 C -0.26 -13.67 9.58 84.03 0.81 -12.86 16 22 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 23 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 24 N -0.93 -54.09 11.18 21.65 0.24 -53.85 16 25 Si 0.96 43.70 29.59 68.60 2.03 45.73 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C 0.15 5.50 5.26 86.36 0.45 5.96 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.47 8.11 -2.39 -0.02 1.45 16 35 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 9.37 7.26 -92.71 -0.67 8.69 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.76 6.59 -2.39 -0.02 1.75 16 41 H 0.06 1.55 6.23 -2.38 -0.01 1.53 16 42 H 0.06 1.80 6.63 -2.39 -0.02 1.78 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.05 2.64 6.03 -2.39 -0.01 2.63 16 47 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 49 H 0.02 0.88 6.07 -2.39 -0.01 0.87 16 50 H 0.05 1.77 6.75 -2.39 -0.02 1.75 16 Total: -1.00 -67.16 397.57 4.34 -62.82 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.27 Total: 20.11 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.88 Total: 0.14 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.63 Total: -113.79 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.78 Total: -15.02 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.16 4.34 -62.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025619414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.992 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds