Wall clock time and date at job start Tue Mar 31 2020 19:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30007 * 127.33850 * 2 1 4 4 O 1.20662 * 112.30292 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15666 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.83010 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47136 * 300.00146 * 6 5 4 8 8 C 1.52997 * 109.46888 * 59.99914 * 6 5 4 9 9 C 1.37365 * 106.33906 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56244 * 180.25792 * 9 5 4 11 11 O 1.21605 * 120.00506 * 269.70147 * 10 9 5 12 12 N 1.34782 * 119.99797 * 89.70013 * 10 9 5 13 13 C 1.46503 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46850 * 35.00287 * 13 12 10 15 15 C 1.52998 * 109.46948 * 155.00367 * 13 12 10 16 16 C 1.52996 * 109.47236 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47281 * 300.00490 * 16 15 13 18 18 H 1.09010 * 109.46740 * 299.99415 * 17 16 15 19 19 N 1.46503 * 109.47356 * 180.02562 * 17 16 15 20 20 C 1.36930 * 120.00308 * 154.99938 * 19 17 16 21 21 H 1.08001 * 120.00214 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46957 * 59.99850 * 24 22 20 26 26 H 1.48503 * 109.47111 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47301 * 299.99963 * 24 22 20 28 28 C 1.52998 * 109.47386 * 59.99602 * 17 16 15 29 29 C 1.53002 * 109.47023 * 299.99974 * 28 17 16 30 30 H 1.09002 * 109.47108 * 269.96126 * 1 2 3 31 31 H 1.09006 * 109.46787 * 29.95101 * 1 2 3 32 32 H 1.08994 * 109.47853 * 149.95757 * 1 2 3 33 33 H 1.08999 * 109.47232 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47329 * 59.99731 * 7 6 5 35 35 H 1.08998 * 109.46962 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46833 * 299.99603 * 7 6 5 37 37 H 1.08992 * 109.47757 * 299.99905 * 8 6 5 38 38 H 1.09000 * 109.47507 * 60.00387 * 8 6 5 39 39 H 1.09001 * 109.47433 * 179.97438 * 8 6 5 40 40 H 0.97002 * 120.00276 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47167 * 299.99992 * 15 13 12 42 42 H 1.09002 * 109.47003 * 60.00238 * 15 13 12 43 43 H 1.09001 * 109.47350 * 59.99937 * 16 15 13 44 44 H 1.08996 * 109.47676 * 179.97438 * 16 15 13 45 45 H 0.97006 * 119.99816 * 334.99214 * 19 17 16 46 46 H 0.97007 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.47003 * 60.00146 * 28 17 16 48 48 H 1.08996 * 109.47167 * 180.02562 * 28 17 16 49 49 H 1.08996 * 109.47146 * 300.00309 * 29 28 17 50 50 H 1.08999 * 109.47057 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6010 -0.0004 6 6 4.9711 -1.3248 -0.0003 7 6 5.7649 -0.9373 -1.2496 8 6 5.7649 -0.9371 1.2488 9 6 2.3990 -1.1697 -0.0003 10 6 2.0399 -2.5992 0.0051 11 8 1.8883 -3.1921 -1.0458 12 7 1.8795 -3.2494 1.1748 13 6 1.5220 -4.6701 1.1801 14 1 2.0021 -5.1687 0.3381 15 6 1.9932 -5.3096 2.4877 16 6 1.6193 -6.7932 2.4936 17 6 0.1008 -6.9369 2.3737 18 1 -0.3790 -6.4380 3.2158 19 7 -0.2573 -8.3575 2.3800 20 6 -1.5038 -8.7476 2.7913 21 1 -2.2228 -8.0081 3.1115 22 6 -1.8432 -10.0936 2.7967 23 7 -0.9671 -10.9948 2.4060 24 14 -3.5434 -10.6258 3.3585 25 1 -4.5708 -10.0002 2.4877 26 1 -3.6537 -12.1041 3.2700 27 1 -3.7574 -10.1962 4.7638 28 6 -0.3704 -6.2974 1.0661 29 6 0.0034 -4.8138 1.0603 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8905 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.7962 -2.4007 0.0002 34 1 5.9398 0.1385 -1.2498 35 1 6.7207 -1.4613 -1.2498 36 1 5.1993 -1.2136 -2.1396 37 1 5.9399 0.1387 1.2488 38 1 5.1995 -1.2131 2.1389 39 1 6.7207 -1.4610 1.2492 40 1 2.0000 -2.7764 2.0131 41 1 3.0749 -5.2068 2.5733 42 1 1.5130 -4.8109 3.3297 43 1 2.0990 -7.2922 1.6516 44 1 1.9553 -7.2489 3.4249 45 1 0.3886 -9.0218 2.0926 46 1 -1.2042 -11.9354 2.4102 47 1 0.1094 -6.7964 0.2241 48 1 -1.4523 -6.3995 0.9809 49 1 -0.4763 -4.3149 1.9023 50 1 -0.3319 -4.3583 0.1285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034669925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:35 Heat of formation + Delta-G solvation = 4.340617 kcal Electronic energy + Delta-G solvation = -29360.588488 eV Core-core repulsion = 25390.156072 eV Total energy + Delta-G solvation = -3970.432416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.18049 -40.04225 -38.01530 -36.47831 -34.91081 -34.85152 -33.06165 -31.39065 -30.53874 -30.43857 -29.10357 -27.67652 -27.52482 -24.92637 -23.45008 -23.31065 -22.39695 -21.29710 -20.65809 -19.85585 -19.41469 -18.12815 -17.97665 -17.03554 -16.56372 -16.33566 -15.93885 -15.19357 -14.70800 -14.68890 -14.22977 -13.83684 -13.80358 -13.79356 -13.60980 -13.57892 -13.51228 -13.18372 -12.99876 -12.68666 -12.61410 -12.07896 -11.94631 -11.85857 -11.78974 -11.77901 -11.50994 -11.25957 -11.08033 -10.82013 -10.80820 -10.73334 -10.33515 -10.21017 -10.14818 -10.12495 -9.79727 -9.72428 -9.60401 -9.08296 -8.85779 -6.94770 -5.75771 -3.04319 0.99184 1.60950 2.20255 2.49629 3.06227 3.44004 3.48601 3.49458 3.77279 3.86048 4.35329 4.40232 4.51940 4.59004 4.65079 4.80347 4.87244 4.99050 5.03226 5.14818 5.15066 5.23116 5.27530 5.30618 5.32819 5.36644 5.50005 5.51772 5.56243 5.64203 5.68790 5.71140 5.72407 5.75013 5.80340 5.83892 5.98914 6.18805 6.20233 6.26151 6.43535 6.52945 6.60409 6.69908 6.96848 7.13332 7.29549 7.70104 7.91724 7.97748 8.43119 9.53992 10.12473 10.46885 11.46916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002272 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.907207 B =12319.620103 C =13074.433836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.357 5.357 4 O 0.099 5.901 5 C 0.026 3.974 6 C -0.017 4.017 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.248 4.248 10 C 0.597 3.403 11 O -0.521 6.521 12 N -0.712 5.712 13 C 0.144 3.856 14 H 0.090 0.910 15 C -0.118 4.118 16 C -0.120 4.120 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.725 5.725 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.132 4.132 29 C -0.124 4.124 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.399 0.601 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.501 24.001 -2.498 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.037 5.963 5 C -0.038 4.038 6 C -0.036 4.036 7 C -0.207 4.207 8 C -0.207 4.207 9 C -0.256 4.256 10 C 0.381 3.619 11 O -0.396 6.396 12 N -0.362 5.362 13 C 0.041 3.959 14 H 0.108 0.892 15 C -0.157 4.157 16 C -0.159 4.159 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.365 5.365 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.173 4.173 29 C -0.163 4.163 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.026 24.825 -3.185 28.215 hybrid contribution -0.939 -1.076 0.506 1.516 sum 12.086 23.748 -2.679 26.781 Atomic orbital electron populations 1.20252 0.85046 1.04463 1.03931 1.24761 0.98613 0.86464 1.00838 1.73629 0.89136 1.23340 1.20216 1.84508 1.21428 1.22509 1.67819 1.24656 0.96839 0.83729 0.98558 1.19931 0.86980 0.98706 0.98018 1.21885 1.00169 1.02545 0.96139 1.21894 1.00217 1.02668 0.95885 1.22007 0.92732 0.95496 1.15338 1.16864 0.76970 0.83769 0.84301 1.90856 1.49826 1.67484 1.31467 1.46158 1.70207 1.12039 1.07834 1.21210 0.96308 0.78769 0.99599 0.89200 1.21750 1.00534 0.97284 0.96121 1.21753 0.98147 0.93619 1.02408 1.20236 0.91518 0.86937 0.94572 0.93617 1.42418 1.14635 1.00690 1.78804 1.19187 0.90588 0.91301 1.35822 0.91301 1.24736 0.98002 0.95910 1.02360 1.69650 1.34215 1.00578 1.53757 0.86291 0.84213 0.77384 0.78443 1.21307 1.21720 1.21316 1.22231 1.01782 0.92396 1.00913 1.21906 0.94134 0.98805 1.01484 0.89506 0.89885 0.89565 0.87855 0.91583 0.90856 0.91800 0.91549 0.91925 0.90843 0.76653 0.91807 0.91498 0.91918 0.91289 0.78299 0.93488 0.92440 0.91736 0.92194 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.01 0.38 -0.29 16 2 C 0.06 0.60 7.59 -79.77 -0.61 0.00 16 3 N -0.36 -4.09 12.01 34.78 0.42 -3.67 16 4 O 0.10 1.02 11.06 18.64 0.21 1.23 16 5 C 0.03 0.24 6.06 -34.63 -0.21 0.03 16 6 C -0.02 -0.12 3.33 -91.77 -0.31 -0.42 16 7 C -0.15 -0.91 9.18 37.16 0.34 -0.57 16 8 C -0.15 -0.76 9.17 37.16 0.34 -0.42 16 9 C -0.25 -2.73 6.24 -102.89 -0.64 -3.38 16 10 C 0.60 7.41 7.27 -12.53 -0.09 7.32 16 11 O -0.52 -8.55 16.77 5.27 0.09 -8.47 16 12 N -0.71 -7.39 5.07 -54.89 -0.28 -7.66 16 13 C 0.14 1.78 2.46 -67.93 -0.17 1.62 16 14 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 15 C -0.12 -1.35 5.39 -26.73 -0.14 -1.50 16 16 C -0.12 -1.83 5.39 -26.73 -0.14 -1.97 16 17 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16 18 H 0.05 0.88 8.08 -51.92 -0.42 0.46 16 19 N -0.73 -17.80 5.12 -53.42 -0.27 -18.07 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 29 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.40 3.16 8.59 -40.82 -0.35 2.81 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 410.02 15.07 6.18 6.18 Total: -1.00 -32.82 410.02 -8.55 -41.38 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.61 Total: 7.12 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.98 Total: -7.96 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.59 Total: -56.77 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.29 Total: -7.24 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.82 -8.55 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034669925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.716 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds