Wall clock time and date at job start Tue Mar 31 2020 19:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30007 * 127.33850 * 2 1 4 4 O 1.20662 * 112.30292 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15666 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.83010 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47136 * 300.00146 * 6 5 4 8 8 C 1.52997 * 109.46888 * 59.99914 * 6 5 4 9 9 C 1.37365 * 106.33906 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56244 * 180.25792 * 9 5 4 11 11 O 1.21605 * 120.00506 * 269.70147 * 10 9 5 12 12 N 1.34782 * 119.99797 * 89.70013 * 10 9 5 13 13 C 1.46503 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46850 * 35.00287 * 13 12 10 15 15 C 1.52998 * 109.46948 * 155.00367 * 13 12 10 16 16 C 1.52996 * 109.47236 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47281 * 300.00490 * 16 15 13 18 18 H 1.09010 * 109.46740 * 299.99415 * 17 16 15 19 19 N 1.46503 * 109.47356 * 180.02562 * 17 16 15 20 20 C 1.36930 * 120.00308 * 154.99938 * 19 17 16 21 21 H 1.08001 * 120.00214 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00058 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46957 * 59.99850 * 24 22 20 26 26 H 1.48503 * 109.47111 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47301 * 299.99963 * 24 22 20 28 28 C 1.52998 * 109.47386 * 59.99602 * 17 16 15 29 29 C 1.53002 * 109.47023 * 299.99974 * 28 17 16 30 30 H 1.09002 * 109.47108 * 269.96126 * 1 2 3 31 31 H 1.09006 * 109.46787 * 29.95101 * 1 2 3 32 32 H 1.08994 * 109.47853 * 149.95757 * 1 2 3 33 33 H 1.08999 * 109.47232 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47329 * 59.99731 * 7 6 5 35 35 H 1.08998 * 109.46962 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46833 * 299.99603 * 7 6 5 37 37 H 1.08992 * 109.47757 * 299.99905 * 8 6 5 38 38 H 1.09000 * 109.47507 * 60.00387 * 8 6 5 39 39 H 1.09001 * 109.47433 * 179.97438 * 8 6 5 40 40 H 0.97002 * 120.00276 * 0.02562 * 12 10 9 41 41 H 1.08996 * 109.47167 * 299.99992 * 15 13 12 42 42 H 1.09002 * 109.47003 * 60.00238 * 15 13 12 43 43 H 1.09001 * 109.47350 * 59.99937 * 16 15 13 44 44 H 1.08996 * 109.47676 * 179.97438 * 16 15 13 45 45 H 0.97006 * 119.99816 * 334.99214 * 19 17 16 46 46 H 0.97007 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.47003 * 60.00146 * 28 17 16 48 48 H 1.08996 * 109.47167 * 180.02562 * 28 17 16 49 49 H 1.08996 * 109.47146 * 300.00309 * 29 28 17 50 50 H 1.08999 * 109.47057 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6010 -0.0004 6 6 4.9711 -1.3248 -0.0003 7 6 5.7649 -0.9373 -1.2496 8 6 5.7649 -0.9371 1.2488 9 6 2.3990 -1.1697 -0.0003 10 6 2.0399 -2.5992 0.0051 11 8 1.8883 -3.1921 -1.0458 12 7 1.8795 -3.2494 1.1748 13 6 1.5220 -4.6701 1.1801 14 1 2.0021 -5.1687 0.3381 15 6 1.9932 -5.3096 2.4877 16 6 1.6193 -6.7932 2.4936 17 6 0.1008 -6.9369 2.3737 18 1 -0.3790 -6.4380 3.2158 19 7 -0.2573 -8.3575 2.3800 20 6 -1.5038 -8.7476 2.7913 21 1 -2.2228 -8.0081 3.1115 22 6 -1.8432 -10.0936 2.7967 23 7 -0.9671 -10.9948 2.4060 24 14 -3.5434 -10.6258 3.3585 25 1 -4.5708 -10.0002 2.4877 26 1 -3.6537 -12.1041 3.2700 27 1 -3.7574 -10.1962 4.7638 28 6 -0.3704 -6.2974 1.0661 29 6 0.0034 -4.8138 1.0603 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8905 -0.5131 32 1 -0.3634 -0.8895 -0.5144 33 1 4.7962 -2.4007 0.0002 34 1 5.9398 0.1385 -1.2498 35 1 6.7207 -1.4613 -1.2498 36 1 5.1993 -1.2136 -2.1396 37 1 5.9399 0.1387 1.2488 38 1 5.1995 -1.2131 2.1389 39 1 6.7207 -1.4610 1.2492 40 1 2.0000 -2.7764 2.0131 41 1 3.0749 -5.2068 2.5733 42 1 1.5130 -4.8109 3.3297 43 1 2.0990 -7.2922 1.6516 44 1 1.9553 -7.2489 3.4249 45 1 0.3886 -9.0218 2.0926 46 1 -1.2042 -11.9354 2.4102 47 1 0.1094 -6.7964 0.2241 48 1 -1.4523 -6.3995 0.9809 49 1 -0.4763 -4.3149 1.9023 50 1 -0.3319 -4.3583 0.1285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034669925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:34 Heat of formation + Delta-G solvation = -16.016124 kcal Electronic energy + Delta-G solvation = -29361.471223 eV Core-core repulsion = 25390.156072 eV Total energy + Delta-G solvation = -3971.315151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.98465 -41.10126 -39.29093 -37.06143 -36.39242 -35.66105 -34.63625 -32.60349 -31.84564 -31.68084 -29.84604 -28.99904 -28.09765 -26.13087 -25.11231 -23.92713 -23.62648 -22.53467 -21.67598 -21.00091 -20.36950 -19.24322 -18.85510 -18.73971 -17.42136 -17.36401 -16.85939 -16.64779 -15.92697 -15.67046 -15.40997 -15.28624 -15.03505 -14.83399 -14.56545 -14.39215 -14.23735 -14.13712 -13.99746 -13.82023 -13.45907 -13.17675 -13.07603 -13.06854 -12.79897 -12.59834 -12.47362 -12.36954 -12.30058 -12.24698 -12.17440 -12.02319 -11.85646 -11.68620 -11.49167 -11.28257 -11.18095 -10.98250 -10.82183 -10.51416 -10.14222 -8.97647 -7.92087 -5.19838 0.22603 0.79698 1.23882 1.47439 1.50134 1.56023 1.69725 2.17491 2.57770 3.04340 3.12079 3.40719 3.61138 3.72483 3.78234 3.85951 3.90994 4.00307 4.03946 4.14340 4.29837 4.38205 4.39702 4.41199 4.52228 4.54802 4.58169 4.61065 4.66374 4.67408 4.77171 4.85840 4.87120 4.91907 5.00972 5.04174 5.07321 5.11046 5.14453 5.26807 5.27817 5.29252 5.33891 5.40857 5.52177 5.56974 5.65879 6.30802 6.40423 7.05875 7.13414 7.36322 8.14679 8.36468 9.31419 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002272 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.907207 B =12319.620103 C =13074.433836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.052 3.948 3 N -0.375 5.375 4 O 0.097 5.903 5 C 0.042 3.958 6 C -0.018 4.018 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.271 4.271 10 C 0.605 3.395 11 O -0.566 6.566 12 N -0.693 5.693 13 C 0.152 3.848 14 H 0.071 0.929 15 C -0.105 4.105 16 C -0.113 4.113 17 C 0.172 3.828 18 H 0.047 0.953 19 N -0.739 5.739 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.297 1.297 27 H -0.276 1.276 28 C -0.123 4.123 29 C -0.113 4.113 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.416 0.584 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.077 0.923 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.339 26.060 -1.069 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 N -0.083 5.083 4 O 0.037 5.963 5 C -0.022 4.022 6 C -0.038 4.038 7 C -0.207 4.207 8 C -0.203 4.203 9 C -0.278 4.278 10 C 0.390 3.610 11 O -0.445 6.445 12 N -0.343 5.343 13 C 0.048 3.952 14 H 0.089 0.911 15 C -0.143 4.143 16 C -0.152 4.152 17 C 0.064 3.936 18 H 0.065 0.935 19 N -0.378 5.378 20 C -0.368 4.368 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.202 1.202 28 C -0.164 4.164 29 C -0.152 4.152 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.254 0.746 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.096 0.904 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.878 26.962 -1.715 30.373 hybrid contribution -1.162 -1.646 0.025 2.015 sum 12.715 25.316 -1.690 28.380 Atomic orbital electron populations 1.20351 0.83716 1.04552 1.05117 1.25134 0.99590 0.86190 1.00106 1.73623 0.89515 1.23790 1.21333 1.84491 1.21151 1.22841 1.67811 1.25126 0.97424 0.83339 0.96303 1.20106 0.86107 0.98106 0.99457 1.21901 1.00643 1.03165 0.94950 1.21896 1.00612 1.03069 0.94683 1.21891 0.93603 0.94754 1.17591 1.16967 0.75984 0.84104 0.83917 1.90840 1.51937 1.68558 1.33134 1.45898 1.69099 1.11140 1.08204 1.20965 0.94725 0.79797 0.99677 0.91098 1.21654 1.02524 0.94201 0.95936 1.21635 0.94983 0.96545 1.02030 1.20501 0.94293 0.83979 0.94837 0.93465 1.42667 1.13615 1.02895 1.78656 1.19579 0.91641 0.91469 1.34082 0.90740 1.25529 1.01624 0.96219 1.03677 1.69809 1.36074 1.00431 1.55890 0.85272 0.80106 0.76387 0.78388 1.20729 1.22363 1.20210 1.22026 0.99960 0.94858 0.99524 1.21776 0.95743 0.95912 1.01811 0.87704 0.88991 0.90242 0.88240 0.91055 0.88955 0.93435 0.91288 0.91703 0.89202 0.74639 0.88943 0.89432 0.92707 0.91376 0.79709 0.94155 0.94162 0.94123 0.90405 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.49 16 2 C 0.05 1.06 7.59 45.16 0.34 1.41 16 3 N -0.37 -8.15 12.01 -44.78 -0.54 -8.69 16 4 O 0.10 1.88 11.06 76.96 0.85 2.73 16 5 C 0.04 0.73 6.06 25.48 0.15 0.89 16 6 C -0.02 -0.22 3.33 -11.54 -0.04 -0.26 16 7 C -0.15 -1.58 9.18 71.98 0.66 -0.92 16 8 C -0.15 -1.08 9.17 71.98 0.66 -0.42 16 9 C -0.27 -5.64 6.24 -18.74 -0.12 -5.75 16 10 C 0.61 14.35 7.27 86.65 0.63 14.98 16 11 O -0.57 -18.59 16.77 -4.05 -0.07 -18.65 16 12 N -0.69 -12.76 5.07 -445.82 -2.26 -15.02 16 13 C 0.15 3.48 2.46 44.99 0.11 3.59 16 14 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 15 C -0.10 -2.07 5.39 30.59 0.16 -1.90 16 16 C -0.11 -3.28 5.39 30.59 0.16 -3.12 16 17 C 0.17 6.42 2.77 44.99 0.12 6.54 16 18 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 19 N -0.74 -36.78 5.12 -322.93 -1.65 -38.44 16 20 C -0.24 -12.99 9.93 84.03 0.83 -12.16 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 23 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 C -0.12 -4.35 5.50 30.59 0.17 -4.18 16 29 C -0.11 -3.06 5.49 30.60 0.17 -2.89 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.30 7.70 -2.39 -0.02 1.28 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.42 5.13 8.59 -92.71 -0.80 4.34 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.37 19.98 7.80 -92.70 -0.72 19.26 16 46 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.60 410.02 3.30 -69.30 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.58 Total: 28.67 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.24 Total: -8.73 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.17 Total: -121.55 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.78 Total: -15.93 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.60 3.30 -69.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034669925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.284 kcal (2) G-P(sol) polarization free energy of solvation -72.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds