Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 C 1.50702 * 110.53869 * 307.75661 * 3 2 1 5 5 O 1.21280 * 119.99917 * 112.79378 * 4 3 2 6 6 N 1.34777 * 120.00154 * 292.79313 * 4 3 2 7 7 C 1.46884 * 120.46271 * 4.83193 * 6 4 3 8 8 C 1.52854 * 109.01773 * 235.48410 * 7 6 4 9 9 C 1.52670 * 109.17759 * 307.82042 * 8 7 6 10 10 C 1.53482 * 113.62473 * 188.99476 * 9 8 7 11 11 N 1.47661 * 85.98696 * 137.70704 * 10 9 8 12 12 C 1.36939 * 134.45720 * 155.71573 * 11 10 9 13 13 H 1.08001 * 120.00532 * 179.97438 * 12 11 10 14 14 C 1.38820 * 119.99883 * 359.95290 * 12 11 10 15 15 N 1.31618 * 119.99609 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99873 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47357 * 59.99962 * 16 14 12 18 18 H 1.48497 * 109.46828 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47084 * 299.99525 * 16 14 12 20 20 C 1.47666 * 91.08884 * 335.68276 * 11 10 9 21 21 C 1.52670 * 113.18350 * 57.46267 * 9 8 7 22 22 C 1.46871 * 120.46738 * 185.10795 * 6 4 3 23 23 C 1.54629 * 110.48797 * 185.14200 * 3 2 1 24 24 C 1.54470 * 101.80100 * 216.54296 * 23 3 2 25 25 N 1.46768 * 105.47286 * 25.39901 * 24 23 3 26 26 C 1.34415 * 111.30019 * 342.98321 * 25 24 23 27 27 O 1.21276 * 124.94045 * 180.42047 * 26 25 24 28 28 H 1.08997 * 109.47138 * 294.96217 * 1 2 3 29 29 H 1.09002 * 109.47047 * 54.96114 * 1 2 3 30 30 H 1.09002 * 109.47150 * 174.96450 * 1 2 3 31 31 H 1.08998 * 109.47447 * 240.00333 * 2 1 3 32 32 H 1.08996 * 109.47300 * 120.00054 * 2 1 3 33 33 H 1.09003 * 109.59208 * 355.31969 * 7 6 4 34 34 H 1.09000 * 109.58567 * 115.74391 * 7 6 4 35 35 H 1.09003 * 109.61042 * 187.84547 * 8 7 6 36 36 H 1.09001 * 109.44414 * 67.70358 * 8 7 6 37 37 H 1.09000 * 113.79270 * 251.97929 * 10 9 8 38 38 H 1.09003 * 113.78826 * 23.44184 * 10 9 8 39 39 H 0.97002 * 119.99607 * 180.02562 * 15 14 12 40 40 H 1.09003 * 113.79137 * 270.04645 * 20 11 10 41 41 H 1.08997 * 113.79541 * 138.57998 * 20 11 10 42 42 H 1.08999 * 109.53183 * 182.51977 * 21 9 8 43 43 H 1.08997 * 109.53342 * 62.29831 * 21 9 8 44 44 H 1.09003 * 109.59528 * 244.26000 * 22 6 4 45 45 H 1.09005 * 109.58906 * 4.69328 * 22 6 4 46 46 H 1.09007 * 110.96577 * 98.40273 * 23 3 2 47 47 H 1.08998 * 110.97071 * 334.68115 * 23 3 2 48 48 H 1.08997 * 110.25039 * 144.39760 * 24 23 3 49 49 H 1.09004 * 110.24715 * 266.31210 * 24 23 3 50 50 H 0.97002 * 124.34292 * 162.96711 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4015 2.2291 -1.1157 5 8 0.6322 3.1308 -0.8589 6 7 1.6853 1.9304 -2.3990 7 6 2.5313 0.7747 -2.7250 8 6 3.7078 1.2442 -3.5806 9 6 3.1769 2.0451 -4.7670 10 6 4.2500 2.3814 -5.8115 11 7 3.2291 2.0343 -6.8203 12 6 3.0224 2.3720 -8.1312 13 1 2.1737 1.9706 -8.6650 14 6 3.9036 3.2308 -8.7740 15 7 4.9379 3.7200 -8.1235 16 14 3.6212 3.6920 -10.5619 17 1 2.3033 4.3626 -10.6980 18 1 4.6951 4.6142 -11.0107 19 1 3.6413 2.4653 -11.3987 20 6 2.5207 1.1765 -5.8493 21 6 2.3304 3.2456 -4.3513 22 6 1.1581 2.7593 -3.4907 23 6 3.5805 1.4719 -0.1298 24 6 3.9514 2.6651 0.7785 25 7 2.8561 2.7733 1.7494 26 6 1.7682 2.1013 1.3351 27 8 0.7210 2.0325 1.9430 28 1 -0.3633 0.4337 0.9316 29 1 -0.3633 0.5900 -0.8414 30 1 -0.3633 -1.0237 -0.0902 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.9066 0.3254 -1.8054 34 1 1.9486 0.0406 -3.2814 35 1 4.2638 0.3799 -3.9439 36 1 4.3645 1.8740 -2.9803 37 1 4.5392 3.4323 -5.8221 38 1 5.1037 1.7038 -5.7988 39 1 5.5535 4.3204 -8.5725 40 1 2.8605 0.1407 -5.8478 41 1 1.4355 1.2697 -5.8898 42 1 1.9468 3.7464 -5.2402 43 1 2.9415 3.9405 -3.7754 44 1 0.4765 2.1681 -4.1023 45 1 0.6290 3.6172 -3.0755 46 1 3.8815 1.6581 -1.1608 47 1 4.0210 0.5469 0.2421 48 1 4.8927 2.4699 1.2921 49 1 4.0263 3.5789 0.1890 50 1 2.9105 3.2663 2.5830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035725350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = -1.278934 kcal Electronic energy + Delta-G solvation = -31402.533630 eV Core-core repulsion = 27431.857532 eV Total energy + Delta-G solvation = -3970.676098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78241 -39.78755 -38.41744 -36.65457 -35.83375 -34.63727 -32.46973 -31.25158 -30.49209 -30.08238 -27.73722 -26.85154 -25.10271 -24.09675 -23.53410 -22.91186 -22.44531 -21.74037 -20.63446 -19.11872 -17.71948 -17.45798 -16.99745 -16.74626 -16.31631 -15.66650 -15.03043 -14.96808 -14.86379 -14.67596 -14.54820 -14.07842 -13.89800 -13.77238 -13.60190 -13.50146 -13.17731 -12.94409 -12.78924 -12.44898 -12.22127 -12.16718 -11.93121 -11.71539 -11.67284 -11.32417 -11.16481 -11.08540 -11.05265 -10.89277 -10.84370 -10.40372 -10.20244 -9.88128 -9.78404 -9.71257 -9.48874 -9.38529 -9.33515 -8.79951 -8.49188 -6.87758 -5.77873 -3.09420 2.28936 2.53732 2.95812 3.20582 3.38362 3.42971 3.43680 3.85388 4.06424 4.19778 4.44460 4.47140 4.64681 4.80245 4.87634 4.96970 5.01677 5.14951 5.18826 5.21317 5.25822 5.30315 5.39841 5.43913 5.46009 5.51488 5.58256 5.65497 5.76497 5.82735 5.85748 5.91712 5.93147 6.12237 6.22313 6.25419 6.27598 6.39319 6.52847 6.57551 6.60755 6.75782 6.77155 6.83196 7.20725 7.34669 7.39154 7.56364 7.97887 8.05496 8.12243 9.04187 9.70381 10.60019 11.38979 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.002941 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.918912 B = 9517.368865 C = 9736.925214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.116 4.116 4 C 0.540 3.460 5 O -0.533 6.533 6 N -0.598 5.598 7 C 0.092 3.908 8 C -0.121 4.121 9 C -0.108 4.108 10 C 0.174 3.826 11 N -0.608 5.608 12 C -0.223 4.223 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.126 3.874 21 C -0.096 4.096 22 C 0.114 3.886 23 C -0.141 4.141 24 C 0.100 3.900 25 N -0.731 5.731 26 C 0.550 3.450 27 O -0.511 6.511 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.253 0.747 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -7.406 18.770 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.142 4.142 3 C -0.123 4.123 4 C 0.326 3.674 5 O -0.409 6.409 6 N -0.331 5.331 7 C -0.031 4.031 8 C -0.160 4.160 9 C -0.109 4.109 10 C 0.048 3.952 11 N -0.334 5.334 12 C -0.350 4.350 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.740 3.260 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.213 1.213 20 C 0.000 4.000 21 C -0.134 4.134 22 C -0.008 4.008 23 C -0.179 4.179 24 C -0.025 4.025 25 N -0.388 5.388 26 C 0.334 3.666 27 O -0.385 6.385 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.807 -6.839 18.788 20.010 hybrid contribution 0.269 0.361 -0.911 1.016 sum -0.538 -6.478 17.877 19.022 Atomic orbital electron populations 1.21908 0.94274 1.01771 1.03996 1.21647 0.97906 0.91134 1.03487 1.21700 0.97600 0.98731 0.94277 1.19596 0.81398 0.83457 0.82932 1.90747 1.35341 1.31649 1.83171 1.47975 1.50455 1.29519 1.05156 1.22153 0.92683 0.87906 1.00309 1.21823 0.96605 1.00581 0.97002 1.22385 0.99492 0.95995 0.93065 1.22231 0.89932 1.00187 0.82836 1.45937 1.27386 1.51559 1.08550 1.18966 1.07971 1.22664 0.85443 0.90483 1.24744 0.97219 1.00147 0.98203 1.69799 1.15469 1.35823 1.35748 0.86244 0.77156 0.77964 0.84658 1.21107 1.21607 1.21288 1.22590 0.96061 0.93411 0.87927 1.21492 0.95645 0.96757 0.99471 1.21737 0.96603 0.95173 0.87285 1.23173 0.92049 0.99739 1.02919 1.22103 0.90367 0.99043 0.90972 1.46083 1.14802 1.54024 1.23843 1.19923 0.82971 0.77943 0.85762 1.90698 1.26105 1.60983 1.60664 0.90395 0.92673 0.92358 0.89693 0.90600 0.89012 0.90848 0.90391 0.91673 0.91010 0.95776 0.93673 0.95156 0.94150 0.89364 0.92157 0.91259 0.89405 0.87240 0.88469 0.89619 0.90709 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.42 37.15 0.35 -1.48 16 2 C -0.10 -0.95 4.64 -26.73 -0.12 -1.08 16 3 C -0.12 -1.25 0.29 -155.64 -0.04 -1.29 16 4 C 0.54 7.46 4.87 -10.98 -0.05 7.41 16 5 O -0.53 -9.64 15.55 5.56 0.09 -9.56 16 6 N -0.60 -7.48 2.88 -172.96 -0.50 -7.98 16 7 C 0.09 0.92 4.29 -3.91 -0.02 0.90 16 8 C -0.12 -1.42 4.98 -26.98 -0.13 -1.55 16 9 C -0.11 -1.75 0.77 -154.43 -0.12 -1.87 16 10 C 0.17 3.75 6.64 -3.16 -0.02 3.73 16 11 N -0.61 -14.66 3.53 -179.80 -0.64 -15.29 16 12 C -0.22 -6.05 10.70 -15.06 -0.16 -6.21 16 13 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 15 N -0.92 -26.51 11.39 55.49 0.63 -25.88 16 16 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.13 2.34 7.72 -3.15 -0.02 2.31 16 21 C -0.10 -1.52 5.22 -26.72 -0.14 -1.66 16 22 C 0.11 1.62 6.29 -3.66 -0.02 1.59 16 23 C -0.14 -1.02 4.83 -25.10 -0.12 -1.14 16 24 C 0.10 0.70 7.78 -3.13 -0.02 0.67 16 25 N -0.73 -6.85 6.24 -59.18 -0.37 -7.22 16 26 C 0.55 7.09 6.46 -10.83 -0.07 7.02 16 27 O -0.51 -8.44 15.80 5.56 0.09 -8.35 16 28 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 29 H 0.05 0.72 6.87 -51.93 -0.36 0.36 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.62 5.43 -51.93 -0.28 0.33 16 32 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.09 0.69 2.95 -51.93 -0.15 0.54 16 34 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 36 H 0.06 0.70 6.83 -51.93 -0.35 0.35 16 37 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 38 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 42 H 0.09 1.66 8.01 -51.93 -0.42 1.24 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.97 7.49 -51.93 -0.39 0.58 16 45 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 46 H 0.11 0.81 4.19 -51.93 -0.22 0.59 16 47 H 0.10 0.46 7.91 -51.93 -0.41 0.05 16 48 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.41 3.14 8.96 -40.82 -0.37 2.77 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -34.93 372.18 -8.66 -43.58 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.72 Total: 1.25 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -0.82 Total: 7.08 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.87 Total: -56.37 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.93 -8.66 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035725350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.304 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds