Wall clock time and date at job start Tue Mar 31 2020 19:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47035 * 2 1 4 4 O 1.33490 * 126.82854 * 270.01961 * 3 2 1 5 5 N 1.20659 * 113.15769 * 180.02562 * 4 3 2 6 6 C 1.30014 * 112.30302 * 0.02562 * 5 4 3 7 7 C 1.50694 * 127.34076 * 179.73697 * 6 5 4 8 8 C 1.37359 * 126.82813 * 90.02574 * 3 2 1 9 9 C 1.47396 * 128.56745 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99906 * 270.02776 * 9 8 3 11 11 N 1.34771 * 120.00090 * 90.02251 * 9 8 3 12 12 C 1.46929 * 120.63305 * 359.71900 * 11 9 8 13 13 C 1.52758 * 109.01251 * 233.58356 * 12 11 9 14 14 C 1.53045 * 109.38618 * 305.59063 * 13 12 11 15 15 H 1.08995 * 109.45058 * 181.24825 * 14 13 12 16 16 N 1.46497 * 109.45675 * 301.22145 * 14 13 12 17 17 C 1.36937 * 119.99586 * 275.06310 * 16 14 13 18 18 H 1.08000 * 120.00259 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00020 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99998 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46942 * 120.00410 * 21 19 17 24 24 H 1.48500 * 109.47039 * 240.00332 * 21 19 17 25 25 C 1.53044 * 109.53683 * 61.23622 * 14 13 12 26 26 H 1.08998 * 109.52305 * 58.60330 * 25 14 13 27 27 C 1.52999 * 109.49498 * 178.68406 * 25 14 13 28 28 C 1.53007 * 109.46914 * 184.83657 * 27 25 14 29 29 C 1.46933 * 120.63239 * 180.02562 * 11 9 8 30 30 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.00494 * 1 2 3 32 32 H 1.09007 * 109.47058 * 59.99611 * 1 2 3 33 33 H 1.09004 * 109.47357 * 240.00208 * 2 1 3 34 34 H 1.08998 * 109.46892 * 119.99811 * 2 1 3 35 35 H 1.08995 * 109.47429 * 90.02646 * 7 6 5 36 36 H 1.09002 * 109.47586 * 210.03257 * 7 6 5 37 37 H 1.09009 * 109.46932 * 330.02737 * 7 6 5 38 38 H 1.09003 * 109.58489 * 353.42510 * 12 11 9 39 39 H 1.09003 * 109.58325 * 113.83936 * 12 11 9 40 40 H 1.09000 * 109.56522 * 185.55324 * 13 12 11 41 41 H 1.09006 * 109.36008 * 65.50100 * 13 12 11 42 42 H 0.96993 * 120.00636 * 95.06459 * 16 14 13 43 43 H 0.96998 * 120.00242 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47343 * 304.83948 * 27 25 14 45 45 H 1.08999 * 109.46710 * 64.84454 * 27 25 14 46 46 H 1.08997 * 109.46899 * 180.02562 * 28 27 25 47 47 H 1.08995 * 109.47353 * 300.00285 * 28 27 25 48 48 H 1.08998 * 109.46455 * 60.00137 * 28 27 25 49 49 H 1.08995 * 109.58693 * 246.15600 * 29 11 9 50 50 H 1.09000 * 109.58250 * 6.43919 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6900 3.2805 -0.7833 6 6 2.7564 3.4640 0.5021 7 6 3.2031 4.7079 1.2259 8 6 2.3072 2.1969 1.0995 9 6 2.1835 1.8465 2.5258 10 8 1.1394 2.0529 3.1143 11 7 3.2273 1.2973 3.1778 12 6 4.4930 1.0361 2.4789 13 6 4.8781 -0.4287 2.6775 14 6 4.9087 -0.7476 4.1741 15 1 5.2049 -1.7866 4.3178 16 7 5.8724 0.1316 4.8407 17 6 7.1989 -0.2068 4.8738 18 1 7.5347 -1.1216 4.4081 19 6 8.1123 0.6264 5.5050 20 7 7.7032 1.7415 6.0721 21 14 9.9219 0.1652 5.5496 22 1 10.1209 -1.1268 4.8450 23 1 10.7189 1.2228 4.8777 24 1 10.3644 0.0331 6.9609 25 6 3.5178 -0.5265 4.7730 26 1 2.7955 -1.1623 4.2610 27 6 3.5414 -0.8769 6.2621 28 6 2.1259 -0.7718 6.8333 29 6 3.1190 0.9420 4.5994 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3436 5.3548 1.4013 36 1 3.6508 4.4318 2.1806 37 1 3.9383 5.2370 0.6194 38 1 4.3717 1.2397 1.4150 39 1 5.2752 1.6755 2.8884 40 1 5.8632 -0.6088 2.2470 41 1 4.1433 -1.0655 2.1848 42 1 5.5710 0.9533 5.2587 43 1 8.3414 2.3236 6.5135 44 1 3.9103 -1.8945 6.3901 45 1 4.1978 -0.1836 6.7880 46 1 2.1428 -1.0209 7.8943 47 1 1.7571 0.2459 6.7053 48 1 1.4695 -1.4650 6.3072 49 1 3.7866 1.5734 5.1857 50 1 2.0919 1.0859 4.9347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037987978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:55 Heat of formation + Delta-G solvation = 20.162573 kcal Electronic energy + Delta-G solvation = -31119.949225 eV Core-core repulsion = 27150.202900 eV Total energy + Delta-G solvation = -3969.746325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.91281 -40.07604 -37.87311 -35.02317 -34.66898 -34.28620 -33.78581 -31.75959 -30.52695 -29.51247 -28.90319 -28.49350 -25.87868 -24.24011 -23.88346 -23.62829 -23.22712 -20.88542 -20.43950 -19.58663 -18.42524 -17.88062 -17.41303 -17.27921 -16.44958 -15.90507 -15.33088 -14.87940 -14.60450 -14.41742 -14.08032 -14.04312 -13.67304 -13.46492 -13.41003 -13.32298 -13.18024 -13.08572 -12.89649 -12.64931 -12.58808 -12.29261 -11.84415 -11.82733 -11.64894 -11.45845 -11.13880 -11.03799 -11.00000 -10.85733 -10.79385 -10.37196 -10.32501 -10.18962 -10.03130 -9.85967 -9.82105 -9.60645 -9.36930 -8.96966 -8.33925 -7.02548 -5.83682 -3.12202 1.26124 1.88519 2.49469 2.76603 3.26118 3.38193 3.44632 3.46555 4.04210 4.15731 4.53475 4.60103 4.74355 4.90382 4.95119 5.06480 5.11047 5.22199 5.28940 5.36153 5.42187 5.44128 5.49798 5.54672 5.55747 5.56331 5.62874 5.64440 5.72576 5.74702 5.77374 5.85679 5.95634 5.98796 6.03642 6.10003 6.14065 6.28984 6.32246 6.36668 6.51247 6.56039 6.65088 6.70766 6.88203 6.94129 7.56387 7.65064 8.17821 8.22305 8.34669 9.46739 10.02641 10.37603 11.38672 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.004010 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.788420 B = 6980.507046 C = 8034.064065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.013 3.987 4 O 0.095 5.905 5 N -0.358 5.358 6 C 0.055 3.945 7 C -0.078 4.078 8 C -0.234 4.234 9 C 0.596 3.404 10 O -0.539 6.539 11 N -0.587 5.587 12 C 0.116 3.884 13 C -0.149 4.149 14 C 0.178 3.822 15 H 0.052 0.948 16 N -0.718 5.718 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.102 4.102 26 H 0.066 0.934 27 C -0.110 4.110 28 C -0.153 4.153 29 C 0.118 3.882 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 -2.895 -9.654 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.050 4.050 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.241 4.241 9 C 0.382 3.618 10 O -0.417 6.417 11 N -0.318 5.318 12 C -0.006 4.006 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.070 0.930 16 N -0.361 5.361 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.734 3.266 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.122 4.122 26 H 0.085 0.915 27 C -0.148 4.148 28 C -0.211 4.211 29 C -0.004 4.004 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.084 -2.111 -10.392 16.842 hybrid contribution 1.089 -0.143 0.802 1.360 sum -11.995 -2.254 -9.590 15.522 Atomic orbital electron populations 1.21786 0.92947 1.02927 1.03145 1.20225 0.97131 0.85868 1.05086 1.24595 0.99146 0.96150 0.85139 1.84504 1.61716 1.17471 1.32955 1.73594 1.17632 0.98638 1.16613 1.24751 1.00187 0.96786 0.88959 1.20233 1.02084 0.91377 0.99877 1.21902 1.11618 0.95254 0.95327 1.16904 0.83405 0.77632 0.83902 1.90780 1.28389 1.54722 1.67762 1.48077 1.12834 1.59492 1.11433 1.21625 0.84814 0.98540 0.95654 1.22461 1.00975 0.94598 1.00966 1.20226 0.88226 0.95195 0.89558 0.92994 1.42473 1.03573 1.24603 1.65406 1.19251 0.83849 1.04353 1.29440 0.91207 1.24690 0.97848 0.97116 1.00967 1.69650 1.33444 1.13157 1.41698 0.86189 0.85740 0.77439 0.77215 1.20640 1.21993 1.21953 1.21742 0.98128 0.95410 0.96948 0.91521 1.21417 0.96482 1.02435 0.94459 1.21856 0.97405 1.01491 1.00327 1.21765 1.02801 0.96069 0.79749 0.91025 0.91575 0.92037 0.88770 0.88390 0.89734 0.89555 0.89885 0.91695 0.89537 0.90612 0.93395 0.78103 0.93567 0.91946 0.90433 0.93124 0.92786 0.93362 0.90406 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.04 -0.41 6.38 -27.88 -0.18 -0.59 16 3 C 0.01 0.16 6.69 -34.63 -0.23 -0.07 16 4 O 0.10 1.26 11.06 18.66 0.21 1.47 16 5 N -0.36 -5.17 12.01 34.78 0.42 -4.75 16 6 C 0.06 0.78 7.59 -79.77 -0.61 0.18 16 7 C -0.08 -0.93 10.49 36.00 0.38 -0.56 16 8 C -0.23 -3.38 4.23 -102.89 -0.44 -3.82 16 9 C 0.60 9.57 7.49 -12.53 -0.09 9.47 16 10 O -0.54 -10.03 16.52 5.27 0.09 -9.94 16 11 N -0.59 -9.17 2.98 -174.33 -0.52 -9.69 16 12 C 0.12 1.82 6.06 -3.93 -0.02 1.80 16 13 C -0.15 -2.32 5.76 -26.83 -0.15 -2.48 16 14 C 0.18 3.12 2.53 -67.89 -0.17 2.95 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -15.75 3.72 -53.38 -0.20 -15.95 16 17 C -0.24 -6.00 9.93 -15.06 -0.15 -6.15 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.38 13.06 55.49 0.72 -25.66 16 21 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C -0.10 -1.55 2.14 -90.52 -0.19 -1.74 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 28 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 29 C 0.12 1.88 5.03 -3.73 -0.02 1.86 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.06 0.95 6.25 -51.93 -0.32 0.62 16 39 H 0.09 1.61 7.74 -51.93 -0.40 1.20 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.38 9.06 5.94 -40.82 -0.24 8.82 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.08 1.39 6.64 -51.93 -0.34 1.04 16 50 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -29.57 399.65 -7.91 -37.48 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.24 Total: 8.47 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.39 Total: -3.81 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.42 Total: -56.04 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.29 Total: -8.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.57 -7.91 -37.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037987978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.641 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds