Wall clock time and date at job start Tue Mar 31 2020 19:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47035 * 2 1 4 4 O 1.33490 * 126.82854 * 270.01961 * 3 2 1 5 5 N 1.20659 * 113.15769 * 180.02562 * 4 3 2 6 6 C 1.30014 * 112.30302 * 0.02562 * 5 4 3 7 7 C 1.50694 * 127.34076 * 179.73697 * 6 5 4 8 8 C 1.37359 * 126.82813 * 90.02574 * 3 2 1 9 9 C 1.47396 * 128.56745 * 359.97438 * 8 3 2 10 10 O 1.21610 * 119.99906 * 270.02776 * 9 8 3 11 11 N 1.34771 * 120.00090 * 90.02251 * 9 8 3 12 12 C 1.46929 * 120.63305 * 359.71900 * 11 9 8 13 13 C 1.52758 * 109.01251 * 233.58356 * 12 11 9 14 14 C 1.53045 * 109.38618 * 305.59063 * 13 12 11 15 15 H 1.08995 * 109.45058 * 181.24825 * 14 13 12 16 16 N 1.46497 * 109.45675 * 301.22145 * 14 13 12 17 17 C 1.36937 * 119.99586 * 275.06310 * 16 14 13 18 18 H 1.08000 * 120.00259 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00020 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99998 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46942 * 120.00410 * 21 19 17 24 24 H 1.48500 * 109.47039 * 240.00332 * 21 19 17 25 25 C 1.53044 * 109.53683 * 61.23622 * 14 13 12 26 26 H 1.08998 * 109.52305 * 58.60330 * 25 14 13 27 27 C 1.52999 * 109.49498 * 178.68406 * 25 14 13 28 28 C 1.53007 * 109.46914 * 184.83657 * 27 25 14 29 29 C 1.46933 * 120.63239 * 180.02562 * 11 9 8 30 30 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47315 * 300.00494 * 1 2 3 32 32 H 1.09007 * 109.47058 * 59.99611 * 1 2 3 33 33 H 1.09004 * 109.47357 * 240.00208 * 2 1 3 34 34 H 1.08998 * 109.46892 * 119.99811 * 2 1 3 35 35 H 1.08995 * 109.47429 * 90.02646 * 7 6 5 36 36 H 1.09002 * 109.47586 * 210.03257 * 7 6 5 37 37 H 1.09009 * 109.46932 * 330.02737 * 7 6 5 38 38 H 1.09003 * 109.58489 * 353.42510 * 12 11 9 39 39 H 1.09003 * 109.58325 * 113.83936 * 12 11 9 40 40 H 1.09000 * 109.56522 * 185.55324 * 13 12 11 41 41 H 1.09006 * 109.36008 * 65.50100 * 13 12 11 42 42 H 0.96993 * 120.00636 * 95.06459 * 16 14 13 43 43 H 0.96998 * 120.00242 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.47343 * 304.83948 * 27 25 14 45 45 H 1.08999 * 109.46710 * 64.84454 * 27 25 14 46 46 H 1.08997 * 109.46899 * 180.02562 * 28 27 25 47 47 H 1.08995 * 109.47353 * 300.00285 * 28 27 25 48 48 H 1.08998 * 109.46455 * 60.00137 * 28 27 25 49 49 H 1.08995 * 109.58693 * 246.15600 * 29 11 9 50 50 H 1.09000 * 109.58250 * 6.43919 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6900 3.2805 -0.7833 6 6 2.7564 3.4640 0.5021 7 6 3.2031 4.7079 1.2259 8 6 2.3072 2.1969 1.0995 9 6 2.1835 1.8465 2.5258 10 8 1.1394 2.0529 3.1143 11 7 3.2273 1.2973 3.1778 12 6 4.4930 1.0361 2.4789 13 6 4.8781 -0.4287 2.6775 14 6 4.9087 -0.7476 4.1741 15 1 5.2049 -1.7866 4.3178 16 7 5.8724 0.1316 4.8407 17 6 7.1989 -0.2068 4.8738 18 1 7.5347 -1.1216 4.4081 19 6 8.1123 0.6264 5.5050 20 7 7.7032 1.7415 6.0721 21 14 9.9219 0.1652 5.5496 22 1 10.1209 -1.1268 4.8450 23 1 10.7189 1.2228 4.8777 24 1 10.3644 0.0331 6.9609 25 6 3.5178 -0.5265 4.7730 26 1 2.7955 -1.1623 4.2610 27 6 3.5414 -0.8769 6.2621 28 6 2.1259 -0.7718 6.8333 29 6 3.1190 0.9420 4.5994 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3436 5.3548 1.4013 36 1 3.6508 4.4318 2.1806 37 1 3.9383 5.2370 0.6194 38 1 4.3717 1.2397 1.4150 39 1 5.2752 1.6755 2.8884 40 1 5.8632 -0.6088 2.2470 41 1 4.1433 -1.0655 2.1848 42 1 5.5710 0.9533 5.2587 43 1 8.3414 2.3236 6.5135 44 1 3.9103 -1.8945 6.3901 45 1 4.1978 -0.1836 6.7880 46 1 2.1428 -1.0209 7.8943 47 1 1.7571 0.2459 6.7053 48 1 1.4695 -1.4650 6.3072 49 1 3.7866 1.5734 5.1857 50 1 2.0919 1.0859 4.9347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037987978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:54 Heat of formation + Delta-G solvation = 4.622787 kcal Electronic energy + Delta-G solvation = -31120.623081 eV Core-core repulsion = 27150.202900 eV Total energy + Delta-G solvation = -3970.420180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.97667 -41.39897 -39.24706 -36.09508 -35.73755 -35.59655 -35.21498 -33.41801 -31.47886 -31.05610 -30.05487 -29.71976 -27.17159 -25.63863 -25.08855 -24.98444 -24.38632 -22.17696 -21.53920 -20.71794 -19.77101 -19.24368 -18.98358 -18.49295 -17.66455 -17.09520 -16.68098 -16.27289 -16.00612 -15.66805 -15.47125 -15.27445 -14.80307 -14.78979 -14.62040 -14.38746 -14.36053 -14.21379 -14.05195 -13.89810 -13.64539 -13.46638 -13.11212 -12.93880 -12.88118 -12.65518 -12.55148 -12.50034 -12.36681 -12.17814 -12.04360 -11.85939 -11.83248 -11.59549 -11.43660 -11.28979 -11.10656 -10.96439 -10.82131 -10.41416 -9.70226 -8.90150 -7.87347 -5.12824 0.25091 0.79410 1.23914 1.48994 1.51152 1.58797 1.70271 2.08963 2.60792 2.98467 3.18320 3.46302 3.48743 3.79821 3.82715 3.88601 4.01119 4.07905 4.10125 4.22056 4.23264 4.28319 4.35424 4.43351 4.46704 4.48711 4.49396 4.59805 4.62541 4.69905 4.78870 4.83400 4.88306 4.95721 4.99633 5.02336 5.03688 5.06330 5.18971 5.23218 5.26862 5.27860 5.31141 5.42857 5.53189 5.61933 5.66871 6.27637 6.34799 6.93892 7.14541 7.42778 8.19313 8.41987 9.36058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.004010 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.788420 B = 6980.507046 C = 8034.064065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.034 3.966 4 O 0.098 5.902 5 N -0.372 5.372 6 C 0.047 3.953 7 C -0.079 4.079 8 C -0.264 4.264 9 C 0.604 3.396 10 O -0.566 6.566 11 N -0.584 5.584 12 C 0.127 3.873 13 C -0.140 4.140 14 C 0.172 3.828 15 H 0.052 0.948 16 N -0.724 5.724 17 C -0.222 4.222 18 H 0.076 0.924 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.301 1.301 24 H -0.301 1.301 25 C -0.090 4.090 26 H 0.092 0.908 27 C -0.105 4.105 28 C -0.147 4.147 29 C 0.124 3.876 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.373 0.627 43 H 0.246 0.754 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -5.043 -11.447 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.030 4.030 4 O 0.037 5.963 5 N -0.080 5.080 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.272 4.272 9 C 0.391 3.609 10 O -0.446 6.446 11 N -0.314 5.314 12 C 0.005 3.995 13 C -0.181 4.181 14 C 0.063 3.937 15 H 0.070 0.930 16 N -0.365 5.365 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.229 1.229 24 H -0.229 1.229 25 C -0.110 4.110 26 H 0.110 0.890 27 C -0.144 4.144 28 C -0.204 4.204 29 C 0.002 3.998 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.207 0.793 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.070 0.930 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.257 -4.308 -12.225 19.268 hybrid contribution 1.363 0.474 1.313 1.951 sum -12.894 -3.834 -10.912 17.322 Atomic orbital electron populations 1.21768 0.92275 1.04224 1.02133 1.20496 0.97528 0.83795 1.06676 1.25193 0.96728 0.96955 0.84108 1.84491 1.61453 1.17255 1.33084 1.73585 1.18462 0.99315 1.16619 1.25067 1.00022 0.97341 0.89098 1.20295 1.02830 0.91083 0.99394 1.21805 1.14228 0.96257 0.94874 1.17013 0.82774 0.76697 0.84418 1.90761 1.29463 1.55741 1.68645 1.48044 1.12768 1.59386 1.11192 1.21448 0.83843 0.98078 0.96156 1.22340 1.01598 0.94832 0.99318 1.20469 0.88439 0.94168 0.90578 0.92973 1.42598 1.03389 1.24834 1.65718 1.19594 0.85197 1.03623 1.27050 0.90603 1.25324 1.01177 0.97624 1.02209 1.69796 1.34015 1.14443 1.43687 0.85281 0.81870 0.77365 0.76504 1.19089 1.22883 1.22870 1.21656 0.97098 0.95066 0.97143 0.89009 1.21341 0.97420 1.01460 0.94139 1.21792 0.95903 1.01731 1.00967 1.21642 1.02192 0.96225 0.79788 0.88594 0.94052 0.91576 0.85715 0.88159 0.88603 0.90564 0.88623 0.90181 0.92929 0.91488 0.89958 0.79328 0.94494 0.91720 0.93816 0.92333 0.93250 0.91573 0.93031 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.05 -0.70 6.38 29.85 0.19 -0.51 16 3 C 0.03 0.77 6.69 25.48 0.17 0.94 16 4 O 0.10 2.39 11.06 77.01 0.85 3.25 16 5 N -0.37 -10.30 12.01 -44.78 -0.54 -10.83 16 6 C 0.05 1.29 7.59 45.16 0.34 1.63 16 7 C -0.08 -1.86 10.49 71.23 0.75 -1.12 16 8 C -0.26 -7.35 4.23 -18.74 -0.08 -7.43 16 9 C 0.60 18.95 7.49 86.66 0.65 19.60 16 10 O -0.57 -20.86 16.52 -4.06 -0.07 -20.93 16 11 N -0.58 -17.86 2.98 -823.71 -2.45 -20.31 16 12 C 0.13 3.89 6.06 86.22 0.52 4.42 16 13 C -0.14 -4.08 5.76 30.53 0.18 -3.90 16 14 C 0.17 5.80 2.53 45.02 0.11 5.91 16 15 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 16 N -0.72 -32.06 3.72 -322.81 -1.20 -33.27 16 17 C -0.22 -11.23 9.93 84.03 0.83 -10.39 16 18 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.97 -56.61 13.06 21.65 0.28 -56.33 16 21 Si 0.96 44.50 29.55 68.60 2.03 46.52 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 C -0.09 -2.60 2.14 -10.73 -0.02 -2.62 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 C -0.11 -3.09 5.19 30.60 0.16 -2.93 16 28 C -0.15 -3.51 9.67 71.98 0.70 -2.81 16 29 C 0.12 3.92 5.03 86.35 0.43 4.36 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.08 2.22 6.25 -2.39 -0.01 2.21 16 39 H 0.05 1.99 7.74 -2.39 -0.02 1.97 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.37 18.25 5.94 -92.71 -0.55 17.70 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.04 1.58 7.69 -2.39 -0.02 1.56 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 1.22 6.70 -2.39 -0.02 1.21 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.05 1.92 6.64 -2.39 -0.02 1.91 16 50 H 0.09 2.86 5.72 -2.39 -0.01 2.85 16 Total: -1.00 -64.87 399.65 5.40 -59.46 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.39 Total: 32.02 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.11 Total: 0.41 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -3.91 Total: -120.74 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.78 Total: -17.68 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.87 5.40 -59.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037987978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.088 kcal (2) G-P(sol) polarization free energy of solvation -64.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds