Wall clock time and date at job start Tue Mar 31 2020 19:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47127 * 2 1 4 4 C 1.50695 * 110.43342 * 65.32746 * 3 2 1 5 5 O 1.21282 * 120.00531 * 7.73712 * 4 3 2 6 6 N 1.34785 * 119.99918 * 187.73984 * 4 3 2 7 7 C 1.46947 * 120.43778 * 177.33900 * 6 4 3 8 8 C 1.53593 * 108.54685 * 125.79989 * 7 6 4 9 9 H 1.08995 * 111.08925 * 172.42088 * 8 7 6 10 10 C 1.53373 * 108.68576 * 294.31935 * 8 7 6 11 11 C 1.53016 * 109.25357 * 60.26347 * 10 8 7 12 12 C 1.53014 * 109.79497 * 60.57592 * 11 10 8 13 13 C 1.53361 * 109.27411 * 299.43838 * 12 11 10 14 14 H 1.09006 * 110.59443 * 177.50170 * 13 12 11 15 15 C 1.48280 * 120.14166 * 357.36078 * 6 4 3 16 16 N 1.47564 * 107.76786 * 51.10178 * 8 7 6 17 17 C 1.36940 * 121.60924 * 120.52751 * 16 8 7 18 18 H 1.07998 * 120.00206 * 144.24911 * 17 16 8 19 19 C 1.38816 * 119.99969 * 324.24986 * 17 16 8 20 20 N 1.31616 * 120.00041 * 3.33866 * 19 17 16 21 21 Si 1.86795 * 120.00025 * 183.34072 * 19 17 16 22 22 H 1.48495 * 109.47581 * 60.00108 * 21 19 17 23 23 H 1.48502 * 109.47103 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46938 * 299.99549 * 21 19 17 25 25 C 1.54631 * 110.48664 * 187.87042 * 3 2 1 26 26 C 1.54482 * 101.76337 * 94.01121 * 25 3 2 27 27 N 1.46766 * 105.47086 * 25.41668 * 26 25 3 28 28 C 1.34652 * 111.33946 * 342.86275 * 27 26 25 29 29 O 1.21276 * 125.07094 * 180.50511 * 28 27 26 30 30 H 1.09003 * 109.47372 * 65.17296 * 1 2 3 31 31 H 1.09002 * 109.47103 * 185.16966 * 1 2 3 32 32 H 1.09001 * 109.47528 * 305.16649 * 1 2 3 33 33 H 1.08996 * 109.47406 * 240.00093 * 2 1 3 34 34 H 1.09002 * 109.47231 * 120.00005 * 2 1 3 35 35 H 1.09001 * 109.62794 * 6.07804 * 7 6 4 36 36 H 1.09002 * 109.77813 * 245.60287 * 7 6 4 37 37 H 1.09003 * 109.50652 * 180.19764 * 10 8 7 38 38 H 1.08996 * 109.50947 * 300.28794 * 10 8 7 39 39 H 1.08996 * 109.41545 * 300.47900 * 11 10 8 40 40 H 1.08998 * 109.41664 * 180.67705 * 11 10 8 41 41 H 1.08994 * 109.49878 * 179.49056 * 12 11 10 42 42 H 1.09002 * 109.49874 * 59.37751 * 12 11 10 43 43 H 1.08999 * 109.53444 * 114.64681 * 15 6 4 44 44 H 1.08998 * 110.40926 * 353.63887 * 15 6 4 45 45 H 0.96994 * 120.00596 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.96227 * 212.12987 * 25 3 2 47 47 H 1.09001 * 110.96573 * 335.89138 * 25 3 2 48 48 H 1.09001 * 110.24347 * 144.41361 * 26 25 3 49 49 H 1.09001 * 110.24537 * 266.32757 * 26 25 3 50 50 H 0.97006 * 124.34757 * 162.98371 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6596 2.1351 1.2832 5 8 1.1595 1.5020 2.1889 6 7 1.8750 3.4581 1.4245 7 6 1.4548 4.1542 2.6485 8 6 2.6681 4.8948 3.2303 9 1 2.3753 5.5330 4.0640 10 6 3.7056 3.8595 3.6819 11 6 4.1400 3.0219 2.4773 12 6 4.7704 3.9271 1.4169 13 6 3.7374 4.9631 0.9567 14 1 4.1779 5.6480 0.2321 15 6 2.5392 4.2240 0.3425 16 7 3.2674 5.6978 2.1470 17 6 3.3824 7.0591 2.2419 18 1 4.2429 7.5589 1.8224 19 6 2.3927 7.7965 2.8773 20 7 1.3770 7.1823 3.4460 21 14 2.5026 9.6606 2.9253 22 1 2.5112 10.1919 1.5387 23 1 1.3319 10.2068 3.6578 24 1 3.7521 10.0652 3.6183 25 6 3.5732 1.4745 -0.1983 26 6 3.6891 1.6555 -1.7281 27 7 2.4412 2.3085 -2.1408 28 6 1.4928 2.1974 -1.1914 29 8 0.3664 2.6385 -1.2767 30 1 -0.3634 0.4315 -0.9327 31 1 -0.3633 -1.0235 0.0926 32 1 -0.3634 0.5919 0.8401 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.0862 3.4290 3.3740 36 1 0.6670 4.8700 2.4138 37 1 4.5721 4.3713 4.1008 38 1 3.2659 3.2096 4.4384 39 1 3.2709 2.5185 2.0537 40 1 4.8685 2.2771 2.7976 41 1 5.0861 3.3246 0.5652 42 1 5.6342 4.4384 1.8419 43 1 1.8385 4.9466 -0.0756 44 1 2.8868 3.5511 -0.4414 45 1 0.6853 7.6976 3.8896 46 1 4.0171 2.3187 0.3292 47 1 4.0271 0.5357 0.1189 48 1 4.5434 2.2880 -1.9694 49 1 3.7884 0.6860 -2.2162 50 1 2.3148 2.7608 -2.9896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039652674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:29 Heat of formation + Delta-G solvation = -18.270237 kcal Electronic energy + Delta-G solvation = -33556.612678 eV Core-core repulsion = 29585.199781 eV Total energy + Delta-G solvation = -3971.412896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.26616 -40.83874 -39.24574 -37.63325 -35.64162 -34.88740 -34.53065 -33.52386 -32.36034 -30.92612 -29.06908 -28.10472 -27.05153 -25.53352 -24.11231 -23.62382 -23.08847 -22.61619 -22.23919 -20.16808 -19.99361 -18.72073 -18.20505 -17.73737 -17.35645 -16.72207 -16.66893 -16.16176 -15.85392 -15.58399 -15.46268 -15.21897 -15.05225 -14.74022 -14.51482 -14.27217 -14.13264 -14.04826 -13.91121 -13.78768 -13.51695 -13.12873 -13.03222 -12.92244 -12.79211 -12.71772 -12.50998 -12.37547 -12.25347 -12.05708 -11.93555 -11.74146 -11.62744 -11.61222 -11.14845 -11.06774 -10.88043 -10.68030 -10.53808 -9.97400 -9.44329 -8.35436 -7.83451 -5.40736 1.35168 1.47173 1.48608 1.51782 1.54807 1.98543 2.36579 2.50087 3.18743 3.29181 3.31692 3.48995 3.56130 3.76953 3.96246 4.09954 4.13430 4.20664 4.23562 4.27440 4.34998 4.39669 4.45945 4.48692 4.62109 4.70670 4.77673 4.81426 4.82725 4.84076 4.92667 4.97104 4.98441 5.03201 5.13452 5.17372 5.21340 5.27135 5.32991 5.37018 5.45751 5.51164 5.65829 5.69106 5.78646 5.85684 5.96957 6.44875 6.50040 7.09025 7.17133 7.19236 7.81465 8.43248 9.18466 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.004745 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.843920 B = 5900.097168 C = 5966.307539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.116 4.116 4 C 0.529 3.471 5 O -0.573 6.573 6 N -0.588 5.588 7 C 0.126 3.874 8 C 0.177 3.823 9 H 0.087 0.913 10 C -0.126 4.126 11 C -0.142 4.142 12 C -0.120 4.120 13 C 0.145 3.855 14 H 0.086 0.914 15 C 0.091 3.909 16 N -0.594 5.594 17 C -0.259 4.259 18 H 0.069 0.931 19 C -0.039 4.039 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.279 1.279 23 H -0.300 1.300 24 H -0.277 1.277 25 C -0.161 4.161 26 C 0.101 3.899 27 N -0.720 5.720 28 C 0.528 3.472 29 O -0.564 6.564 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.027 0.973 44 H 0.119 0.881 45 H 0.248 0.752 46 H 0.106 0.894 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.113 0.887 50 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.450 -15.100 -12.526 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.120 4.120 3 C -0.123 4.123 4 C 0.319 3.681 5 O -0.454 6.454 6 N -0.319 5.319 7 C 0.002 3.998 8 C 0.069 3.931 9 H 0.104 0.896 10 C -0.165 4.165 11 C -0.180 4.180 12 C -0.159 4.159 13 C 0.038 3.962 14 H 0.104 0.896 15 C -0.033 4.033 16 N -0.316 5.316 17 C -0.389 4.389 18 H 0.087 0.913 19 C -0.236 4.236 20 N -0.571 5.571 21 Si 0.793 3.207 22 H -0.205 1.205 23 H -0.227 1.227 24 H -0.202 1.202 25 C -0.198 4.198 26 C -0.022 4.022 27 N -0.377 5.377 28 C 0.313 3.687 29 O -0.442 6.442 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.136 0.864 45 H 0.058 0.942 46 H 0.124 0.876 47 H 0.150 0.850 48 H 0.138 0.862 49 H 0.131 0.869 50 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.500 -15.116 -11.918 21.466 hybrid contribution -1.137 1.930 0.387 2.273 sum 8.364 -13.185 -11.530 19.410 Atomic orbital electron populations 1.21816 0.96688 1.02061 1.00767 1.21317 0.95590 0.90280 1.04814 1.21839 1.00889 0.98646 0.90958 1.20220 0.77307 0.81704 0.88903 1.90626 1.45966 1.65265 1.43521 1.48502 1.57512 1.07423 1.18512 1.21807 0.98480 0.93869 0.85655 1.21036 0.89473 0.90280 0.92278 0.89576 1.21973 0.99029 0.97615 0.97860 1.22195 1.01629 0.97913 0.96222 1.22081 0.97673 0.97092 0.99010 1.21504 0.92148 0.93062 0.89529 0.89628 1.22973 0.95517 0.95369 0.89491 1.44428 1.71077 1.02192 1.13864 1.19364 1.01878 0.82998 1.34666 0.91308 1.25981 0.95280 1.01630 1.00666 1.69988 1.12665 1.35022 1.39448 0.85399 0.76542 0.81217 0.77523 1.20475 1.22688 1.20240 1.23725 0.89637 1.08090 0.98370 1.22491 0.86160 1.00836 0.92699 1.46302 1.13957 1.57448 1.19959 1.20523 0.84578 0.78208 0.85366 1.90773 1.21201 1.51038 1.81218 0.93860 0.90574 0.95139 0.87201 0.89485 0.92179 0.94631 0.93462 0.93832 0.89846 0.91970 0.88094 0.92284 0.95464 0.86361 0.94239 0.87582 0.84951 0.86186 0.86890 0.73560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 9.15 71.98 0.66 -3.80 16 2 C -0.08 -1.84 4.59 30.59 0.14 -1.70 16 3 C -0.12 -3.02 0.43 -52.93 -0.02 -3.05 16 4 C 0.53 19.68 3.77 87.65 0.33 20.01 16 5 O -0.57 -24.73 13.88 -3.04 -0.04 -24.77 16 6 N -0.59 -23.76 1.66 -813.79 -1.35 -25.11 16 7 C 0.13 6.08 5.83 86.49 0.50 6.58 16 8 C 0.18 8.43 2.62 45.11 0.12 8.55 16 9 H 0.09 4.82 5.84 -2.39 -0.01 4.81 16 10 C -0.13 -5.02 5.59 30.72 0.17 -4.85 16 11 C -0.14 -4.54 4.76 30.60 0.15 -4.39 16 12 C -0.12 -3.43 5.05 30.72 0.16 -3.28 16 13 C 0.14 5.29 3.58 45.11 0.16 5.45 16 14 H 0.09 2.97 8.01 -2.38 -0.02 2.95 16 15 C 0.09 3.28 4.48 86.24 0.39 3.66 16 16 N -0.59 -28.00 2.54 -645.69 -1.64 -29.64 16 17 C -0.26 -13.52 9.70 84.03 0.82 -12.71 16 18 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 19 C -0.04 -2.14 5.35 84.86 0.45 -1.69 16 20 N -0.93 -53.44 10.16 21.65 0.22 -53.22 16 21 Si 0.96 44.22 29.55 68.60 2.03 46.25 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C -0.16 -2.50 5.11 31.65 0.16 -2.34 16 26 C 0.10 0.86 7.37 86.83 0.64 1.50 16 27 N -0.72 -11.94 5.53 -459.49 -2.54 -14.48 16 28 C 0.53 14.81 4.12 87.86 0.36 15.18 16 29 O -0.56 -21.98 16.51 -3.02 -0.05 -22.03 16 30 H 0.04 1.31 6.67 -2.39 -0.02 1.29 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.11 6.26 -2.39 -0.01 1.10 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.93 7.88 -2.39 -0.02 1.91 16 35 H 0.06 2.96 6.98 -2.39 -0.02 2.94 16 36 H 0.04 1.99 7.70 -2.39 -0.02 1.98 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.79 1.72 -3.38 -0.01 2.79 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 1.93 6.02 -2.39 -0.01 1.91 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.12 3.23 2.48 -2.39 -0.01 3.22 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.11 2.01 1.08 -2.39 0.00 2.01 16 47 H 0.13 1.26 7.90 -2.39 -0.02 1.24 16 48 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.42 5.58 8.96 -92.70 -0.83 4.75 16 Total: -1.00 -76.73 349.57 1.96 -74.77 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.16 Total: 25.10 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 5.18 Total: 23.13 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.31 Total: -122.45 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.09 Total: -46.80 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -76.73 1.96 -74.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039652674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.502 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds