Wall clock time and date at job start Tue Mar 31 2020 19:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47548 * 2 1 4 4 C 1.50701 * 110.43283 * 294.68617 * 3 2 1 5 5 O 1.21279 * 119.99809 * 352.60332 * 4 3 2 6 6 N 1.34774 * 120.00054 * 172.61232 * 4 3 2 7 7 C 1.46388 * 120.54934 * 2.05578 * 6 4 3 8 8 C 1.53588 * 108.62415 * 125.70958 * 7 6 4 9 9 H 1.09002 * 111.08241 * 172.53299 * 8 7 6 10 10 C 1.53367 * 108.69012 * 294.42933 * 8 7 6 11 11 C 1.53020 * 109.24341 * 60.25275 * 10 8 7 12 12 C 1.53008 * 109.79387 * 60.59048 * 11 10 8 13 13 C 1.53873 * 109.20587 * 299.30532 * 12 11 10 14 14 H 1.08997 * 110.71891 * 177.61193 * 13 12 11 15 15 C 1.46945 * 120.44493 * 182.31911 * 6 4 3 16 16 N 1.47569 * 107.72160 * 56.55479 * 13 12 11 17 17 C 1.36936 * 121.61316 * 122.25547 * 16 13 12 18 18 H 1.08003 * 120.00142 * 153.36819 * 17 16 13 19 19 C 1.38808 * 119.99909 * 333.37743 * 17 16 13 20 20 N 1.31617 * 120.00338 * 328.74293 * 19 17 16 21 21 Si 1.86807 * 120.00089 * 148.74082 * 19 17 16 22 22 H 1.48500 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46893 * 119.99782 * 21 19 17 24 24 H 1.48493 * 109.47221 * 239.99789 * 21 19 17 25 25 C 1.54626 * 110.48774 * 172.13802 * 3 2 1 26 26 C 1.54685 * 101.67167 * 265.90333 * 25 3 2 27 27 N 1.46760 * 105.53517 * 334.74672 * 26 25 3 28 28 C 1.34420 * 111.30259 * 16.91791 * 27 26 25 29 29 O 1.21278 * 124.94440 * 179.56123 * 28 27 26 30 30 H 1.09005 * 109.47364 * 298.42912 * 1 2 3 31 31 H 1.09003 * 109.46855 * 58.42448 * 1 2 3 32 32 H 1.08997 * 109.47624 * 178.42794 * 1 2 3 33 33 H 1.09005 * 109.47343 * 239.99782 * 2 1 3 34 34 H 1.09009 * 109.47084 * 120.00165 * 2 1 3 35 35 H 1.09000 * 109.49543 * 6.01845 * 7 6 4 36 36 H 1.09000 * 109.67194 * 245.50632 * 7 6 4 37 37 H 1.08989 * 109.51247 * 180.18693 * 10 8 7 38 38 H 1.08999 * 109.51083 * 300.27913 * 10 8 7 39 39 H 1.08995 * 109.41229 * 180.68818 * 11 10 8 40 40 H 1.09002 * 109.41473 * 300.48711 * 11 10 8 41 41 H 1.09001 * 109.50382 * 59.36649 * 12 11 10 42 42 H 1.08993 * 109.50481 * 179.45474 * 12 11 10 43 43 H 1.09002 * 109.62709 * 114.56347 * 15 6 4 44 44 H 1.09005 * 109.78618 * 354.08463 * 15 6 4 45 45 H 0.97001 * 119.99650 * 354.02637 * 20 19 17 46 46 H 1.08998 * 110.96818 * 24.10978 * 25 3 2 47 47 H 1.09003 * 110.96308 * 147.86942 * 25 3 2 48 48 H 1.08996 * 110.29673 * 215.67671 * 26 25 3 49 49 H 1.09008 * 110.13639 * 93.72184 * 26 25 3 50 50 H 0.97008 * 124.34930 * 196.90316 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6594 2.1351 -1.2831 5 8 1.1535 1.5033 -2.1863 6 7 1.8814 3.4567 -1.4271 7 6 2.5322 4.2221 -0.3624 8 6 3.7450 4.9541 -0.9558 9 1 4.1829 5.6395 -0.2301 10 6 4.7769 3.9120 -1.4044 11 6 4.1497 3.0055 -2.4657 12 6 3.7281 3.8404 -3.6767 13 6 2.6870 4.8836 -3.2346 14 1 2.4002 5.5207 -4.0713 15 6 1.4679 4.1518 -2.6539 16 7 3.2877 5.6869 -2.1522 17 6 3.4098 7.0473 -2.2510 18 1 3.4336 7.6536 -1.3575 19 6 3.5027 7.6469 -3.4994 20 7 4.0730 7.0052 -4.4970 21 14 2.8183 9.3649 -3.7637 22 1 2.2331 9.8653 -2.4939 23 1 3.9117 10.2722 -4.1956 24 1 1.7668 9.3231 -4.8113 25 6 3.5732 1.4743 0.1981 26 6 3.6871 1.6578 1.7298 27 7 2.4374 2.3078 2.1418 28 6 1.4932 2.1974 1.1915 29 8 0.3666 2.6382 1.2771 30 1 -0.3634 0.4893 0.9038 31 1 -0.3633 0.5381 -0.8756 32 1 -0.3634 -1.0272 -0.0282 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.8628 3.5433 0.4237 36 1 1.8311 4.9486 0.0484 37 1 5.6459 4.4177 -1.8251 38 1 5.0844 3.3120 -0.5479 39 1 4.8769 2.2560 -2.7776 40 1 3.2751 2.5080 -2.0463 41 1 4.6002 4.3460 -4.0914 42 1 3.2910 3.1890 -4.4333 43 1 0.6851 4.8733 -2.4198 44 1 1.0947 3.4292 -3.3796 45 1 4.5049 6.1509 -4.3403 46 1 4.0271 0.5356 -0.1193 47 1 4.0171 2.3186 -0.3294 48 1 4.5399 2.2917 1.9723 49 1 3.7864 0.6880 2.2176 50 1 2.3092 2.7590 2.9910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039652675.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:33 Heat of formation + Delta-G solvation = 2.849120 kcal Electronic energy + Delta-G solvation = -33534.294692 eV Core-core repulsion = 29563.797600 eV Total energy + Delta-G solvation = -3970.497092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23554 -39.72189 -37.96129 -36.62424 -34.38263 -33.90603 -33.00040 -32.08255 -30.90941 -29.78232 -27.91020 -26.57010 -25.75177 -23.76531 -23.14274 -22.37176 -21.96295 -21.43312 -21.00102 -19.00261 -18.68042 -17.71939 -17.01471 -16.59237 -16.30995 -15.58866 -14.94474 -14.79820 -14.56810 -14.40407 -14.18963 -13.96859 -13.77170 -13.58460 -13.36501 -12.98477 -12.94331 -12.89248 -12.65891 -12.45974 -12.33171 -12.09086 -12.01450 -11.81031 -11.42607 -11.20703 -11.05041 -10.80667 -10.70478 -10.57166 -10.39852 -10.28249 -10.20120 -9.99683 -9.85479 -9.75216 -9.51025 -9.35735 -9.10318 -8.45212 -8.00278 -6.86805 -6.16579 -3.26627 2.39219 2.66454 3.12954 3.25751 3.49449 3.51615 3.65587 4.11798 4.19043 4.42230 4.50647 4.64425 4.75815 4.93810 4.96766 5.19138 5.23556 5.32664 5.37886 5.44096 5.48431 5.52386 5.55056 5.58436 5.61908 5.68482 5.77125 5.83693 5.91725 5.96987 6.11918 6.14569 6.23966 6.25427 6.30527 6.37406 6.42956 6.45235 6.54872 6.66294 6.67933 6.75378 6.78116 6.85725 7.08936 7.15683 7.74674 7.91761 8.04577 8.37808 8.49751 9.00396 9.74425 10.22806 11.12410 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.004573 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.377669 B = 6122.009650 C = 6234.040113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.085 4.085 3 C -0.115 4.115 4 C 0.539 3.461 5 O -0.537 6.537 6 N -0.581 5.581 7 C 0.079 3.921 8 C 0.155 3.845 9 H 0.080 0.920 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.123 4.123 13 C 0.160 3.840 14 H 0.104 0.896 15 C 0.098 3.902 16 N -0.582 5.582 17 C -0.355 4.355 18 H 0.058 0.942 19 C -0.016 4.016 20 N -0.905 5.905 21 Si 1.060 2.940 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.289 1.289 25 C -0.165 4.165 26 C 0.102 3.898 27 N -0.734 5.734 28 C 0.538 3.462 29 O -0.510 6.510 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.274 0.726 46 H 0.099 0.901 47 H 0.125 0.875 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -13.093 12.312 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.123 4.123 3 C -0.122 4.122 4 C 0.327 3.673 5 O -0.415 6.415 6 N -0.313 5.313 7 C -0.046 4.046 8 C 0.046 3.954 9 H 0.098 0.902 10 C -0.174 4.174 11 C -0.181 4.181 12 C -0.162 4.162 13 C 0.052 3.948 14 H 0.121 0.879 15 C -0.025 4.025 16 N -0.304 5.304 17 C -0.484 4.484 18 H 0.076 0.924 19 C -0.220 4.220 20 N -0.545 5.545 21 Si 0.890 3.110 22 H -0.218 1.218 23 H -0.222 1.222 24 H -0.216 1.216 25 C -0.203 4.203 26 C -0.022 4.022 27 N -0.392 5.392 28 C 0.323 3.677 29 O -0.384 6.384 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.143 0.857 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.204 -11.987 10.622 16.018 hybrid contribution 0.514 -0.888 1.672 1.962 sum 0.718 -12.875 12.295 17.817 Atomic orbital electron populations 1.21890 0.94580 1.01682 1.03545 1.21234 0.97456 0.90822 1.02822 1.21756 0.97903 0.98690 0.93887 1.19367 0.78239 0.82091 0.87606 1.90658 1.44363 1.64593 1.41882 1.47880 1.57607 1.07045 1.18725 1.22662 0.96814 0.95657 0.89451 1.21200 0.90582 0.92246 0.91331 0.90204 1.22219 0.99697 0.97797 0.97699 1.22211 1.01014 0.97775 0.97117 1.22031 1.00339 0.97489 0.96325 1.21328 0.89825 0.91192 0.92446 0.87852 1.22351 0.98660 0.95802 0.85675 1.44458 1.67722 1.03148 1.15097 1.19898 1.52457 0.81104 0.94922 0.92441 1.25721 0.98214 1.04717 0.93301 1.70752 1.30935 1.17619 1.35192 0.83636 0.76573 0.75591 0.75241 1.21809 1.22236 1.21595 1.23704 0.93151 1.07131 0.96268 1.22131 0.86873 0.98370 0.94872 1.46211 1.13981 1.58582 1.20388 1.20216 0.84723 0.78433 0.84311 1.90787 1.18611 1.48880 1.80160 0.92516 0.90907 0.92694 0.89759 0.91330 0.90088 0.91599 0.91784 0.93086 0.94312 0.89729 0.91637 0.93362 0.91668 0.89764 0.91438 0.88251 0.85733 0.89481 0.90660 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.23 37.15 0.34 -1.84 16 2 C -0.09 -1.03 4.59 -26.73 -0.12 -1.15 16 3 C -0.12 -1.56 0.43 -155.67 -0.07 -1.62 16 4 C 0.54 9.41 3.83 -10.99 -0.04 9.37 16 5 O -0.54 -10.61 13.85 5.56 0.08 -10.53 16 6 N -0.58 -10.62 1.63 -172.69 -0.28 -10.90 16 7 C 0.08 1.36 4.46 -3.80 -0.02 1.34 16 8 C 0.15 2.92 3.62 -66.85 -0.24 2.67 16 9 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 10 C -0.14 -2.26 5.05 -26.53 -0.13 -2.39 16 11 C -0.14 -2.49 4.74 -26.72 -0.13 -2.62 16 12 C -0.12 -2.49 5.42 -26.27 -0.14 -2.63 16 13 C 0.16 3.53 2.57 -66.58 -0.17 3.36 16 14 H 0.10 2.61 6.24 -51.93 -0.32 2.29 16 15 C 0.10 2.00 5.89 -3.49 -0.02 1.98 16 16 N -0.58 -13.38 2.38 -155.14 -0.37 -13.75 16 17 C -0.36 -9.30 9.55 -15.06 -0.14 -9.45 16 18 H 0.06 1.53 8.00 -52.48 -0.42 1.11 16 19 C -0.02 -0.43 4.61 -17.43 -0.08 -0.51 16 20 N -0.91 -25.64 12.36 55.49 0.69 -24.96 16 21 Si 1.06 24.51 30.02 -169.99 -5.10 19.40 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 25 C -0.17 -1.69 5.11 -24.99 -0.13 -1.82 16 26 C 0.10 0.75 7.39 -3.01 -0.02 0.73 16 27 N -0.73 -7.13 5.56 -59.09 -0.33 -7.46 16 28 C 0.54 7.52 4.11 -10.86 -0.04 7.47 16 29 O -0.51 -9.11 16.42 5.56 0.09 -9.02 16 30 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 31 H 0.07 1.20 6.30 -51.93 -0.33 0.87 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.02 7.89 -51.93 -0.41 0.61 16 34 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.08 1.15 2.42 -51.93 -0.13 1.02 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.19 8.14 -51.94 -0.42 0.77 16 38 H 0.05 0.67 6.01 -51.93 -0.31 0.36 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.45 1.72 -52.45 -0.09 1.36 16 41 H 0.07 1.46 6.37 -51.93 -0.33 1.13 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.08 1.70 6.99 -51.93 -0.36 1.33 16 45 H 0.27 7.69 5.52 -40.82 -0.23 7.47 16 46 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 47 H 0.13 1.49 1.02 -51.93 -0.05 1.44 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 50 H 0.41 3.25 8.96 -40.82 -0.37 2.88 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -32.06 347.18 -8.26 -40.32 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.11 Total: 8.75 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -1.16 Total: 2.90 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.29 Total: -57.06 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.54 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.10 Total: 19.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.06 -8.26 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039652675.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.169 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds