Wall clock time and date at job start Tue Mar 31 2020 19:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.50701 * 110.43337 * 307.36128 * 3 2 1 5 5 O 1.21280 * 119.99957 * 113.05936 * 4 3 2 6 6 N 1.34777 * 120.00046 * 293.05679 * 4 3 2 7 7 C 1.47169 * 135.99766 * 4.47724 * 6 4 3 8 8 C 1.52674 * 87.96108 * 206.73980 * 7 6 4 9 9 C 1.47155 * 136.00086 * 184.85707 * 6 4 3 10 10 C 1.52554 * 113.91002 * 88.15549 * 8 7 6 11 11 C 1.53351 * 109.12693 * 190.30679 * 10 8 7 12 12 N 1.46885 * 108.75264 * 307.75832 * 11 10 8 13 13 C 1.36937 * 120.46524 * 235.65093 * 12 11 10 14 14 H 1.07996 * 120.00114 * 32.27747 * 13 12 11 15 15 C 1.38811 * 119.99917 * 212.27882 * 13 12 11 16 16 N 1.31626 * 120.00184 * 10.54907 * 15 13 12 17 17 Si 1.86800 * 120.00037 * 190.55531 * 15 13 12 18 18 H 1.48495 * 109.47253 * 59.99738 * 17 15 13 19 19 H 1.48504 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46981 * 299.99897 * 17 15 13 21 21 C 1.46893 * 119.07159 * 55.62484 * 12 11 10 22 22 C 1.52554 * 114.24685 * 220.75463 * 8 7 6 23 23 C 1.54630 * 110.48833 * 184.81741 * 3 2 1 24 24 C 1.54479 * 101.76470 * 265.98929 * 23 3 2 25 25 N 1.46758 * 105.47367 * 334.58127 * 24 23 3 26 26 C 1.34420 * 111.30333 * 17.01957 * 25 24 23 27 27 O 1.21278 * 124.94617 * 179.62455 * 26 25 24 28 28 H 1.09006 * 109.46956 * 184.96344 * 1 2 3 29 29 H 1.09001 * 109.47273 * 304.96165 * 1 2 3 30 30 H 1.08993 * 109.47019 * 64.96400 * 1 2 3 31 31 H 1.09002 * 109.47233 * 240.00023 * 2 1 3 32 32 H 1.09001 * 109.47284 * 120.00334 * 2 1 3 33 33 H 1.08995 * 113.49171 * 321.44240 * 7 6 4 34 34 H 1.09005 * 113.48491 * 91.94513 * 7 6 4 35 35 H 1.09011 * 113.48717 * 268.05456 * 9 6 4 36 36 H 1.08991 * 113.49248 * 38.56195 * 9 6 4 37 37 H 1.08993 * 109.52942 * 310.20697 * 10 8 7 38 38 H 1.09008 * 109.52348 * 70.41145 * 10 8 7 39 39 H 1.09001 * 109.59254 * 187.98358 * 11 10 8 40 40 H 1.08995 * 109.71294 * 67.61548 * 11 10 8 41 41 H 0.96998 * 120.00101 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.59366 * 184.58526 * 21 12 11 43 43 H 1.09001 * 109.71508 * 64.22216 * 21 12 11 44 44 H 1.09004 * 109.52897 * 289.73448 * 22 8 7 45 45 H 1.09000 * 109.53010 * 49.87868 * 22 8 7 46 46 H 1.09007 * 110.96501 * 24.10621 * 23 3 2 47 47 H 1.08992 * 110.96743 * 147.86759 * 23 3 2 48 48 H 1.08995 * 110.24681 * 93.58230 * 24 23 3 49 49 H 1.09004 * 110.24485 * 215.58249 * 24 23 3 50 50 H 0.97006 * 124.35249 * 197.03794 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4074 2.2242 -1.1224 5 8 0.6394 3.1292 -0.8735 6 7 1.6953 1.9177 -2.4029 7 6 2.4800 0.8811 -3.0926 8 6 2.6735 1.8687 -4.2407 9 6 1.3682 2.4764 -3.7244 10 6 3.8893 2.7757 -4.0779 11 6 3.8374 3.8811 -5.1395 12 7 3.6616 3.2605 -6.4592 13 6 4.5492 3.5157 -7.4702 14 1 5.5883 3.7019 -7.2423 15 6 4.1134 3.5350 -8.7879 16 7 2.8247 3.5161 -9.0553 17 14 5.3558 3.5876 -10.1819 18 1 6.2305 2.3897 -10.1108 19 1 4.6398 3.6006 -11.4829 20 1 6.1847 4.8137 -10.0602 21 6 2.5206 2.3618 -6.6790 22 6 2.5632 1.2452 -5.6287 23 6 3.5813 1.4717 -0.1216 24 6 4.0129 1.5411 1.3600 25 7 2.8826 2.1525 2.0689 26 6 1.7603 2.1060 1.3305 27 8 0.6807 2.5341 1.6799 28 1 -0.3633 -1.0239 0.0889 29 1 -0.3634 0.5889 0.8422 30 1 -0.3633 0.4349 -0.9311 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.4075 0.6256 -2.5803 34 1 1.8942 0.0041 -3.3680 35 1 0.4771 2.0374 -4.1733 36 1 1.3584 3.5661 -3.7450 37 1 3.8791 3.2238 -3.0844 38 1 4.8001 2.1904 -4.2053 39 1 4.7685 4.4475 -5.1232 40 1 3.0001 4.5483 -4.9349 41 1 2.5202 3.5300 -9.9762 42 1 2.5843 1.9277 -7.6768 43 1 1.5892 2.9196 -6.5820 44 1 3.4274 0.6064 -5.8109 45 1 1.6514 0.6510 -5.6898 46 1 3.9525 0.5621 -0.5939 47 1 3.9128 2.3555 -0.6664 48 1 4.2021 0.5392 1.7451 49 1 4.9035 2.1607 1.4648 50 1 2.9383 2.5407 2.9561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050551237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:42 Heat of formation + Delta-G solvation = -34.528229 kcal Electronic energy + Delta-G solvation = -31068.093060 eV Core-core repulsion = 27095.975164 eV Total energy + Delta-G solvation = -3972.117896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.55924 -41.36966 -39.19344 -37.64321 -37.42620 -35.22339 -34.16349 -32.19696 -31.39575 -31.17070 -28.95925 -28.08024 -27.13622 -25.92197 -24.00583 -23.94722 -23.22986 -22.70063 -21.96297 -19.75095 -19.40934 -18.49972 -18.26683 -17.53399 -17.23658 -17.00708 -16.79283 -16.44373 -15.66496 -15.58958 -15.45688 -15.24536 -15.21055 -14.83904 -14.70126 -14.39060 -14.24671 -14.02472 -13.84445 -13.73808 -13.33567 -13.19532 -13.04210 -12.99957 -12.80144 -12.74532 -12.63838 -12.51610 -12.28436 -12.22471 -11.98845 -11.78381 -11.76968 -11.30332 -11.21547 -11.09860 -10.82176 -10.63335 -10.45423 -10.05086 -9.69911 -8.54361 -7.81296 -5.33561 1.35519 1.51114 1.51963 1.53600 1.58905 1.88019 2.43862 2.54793 3.08131 3.21450 3.30010 3.43820 3.60781 3.71589 3.77363 3.90632 3.97932 4.09789 4.24511 4.28299 4.32017 4.39504 4.48686 4.54446 4.62996 4.64208 4.74938 4.76969 4.78566 4.79109 4.86557 4.92381 4.96549 5.00527 5.02068 5.08468 5.10273 5.20718 5.26599 5.29238 5.41679 5.43364 5.60830 5.70678 5.84325 5.88713 5.99157 6.47814 6.75862 7.06737 7.22606 7.25681 7.92583 8.44597 9.23203 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.002848 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.712579 B = 9827.869900 C =10154.695739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 C -0.106 4.106 4 C 0.553 3.447 5 O -0.586 6.586 6 N -0.634 5.634 7 C 0.116 3.884 8 C -0.073 4.073 9 C 0.106 3.894 10 C -0.089 4.089 11 C 0.141 3.859 12 N -0.607 5.607 13 C -0.261 4.261 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.298 1.298 20 H -0.280 1.280 21 C 0.176 3.824 22 C -0.107 4.107 23 C -0.124 4.124 24 C 0.101 3.899 25 N -0.725 5.725 26 C 0.524 3.476 27 O -0.559 6.559 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.051 0.949 40 H -0.004 1.004 41 H 0.249 0.751 42 H 0.056 0.944 43 H -0.013 1.013 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.141 0.859 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -14.349 20.253 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.129 4.129 3 C -0.113 4.113 4 C 0.343 3.657 5 O -0.466 6.466 6 N -0.367 5.367 7 C -0.005 4.005 8 C -0.074 4.074 9 C -0.017 4.017 10 C -0.128 4.128 11 C 0.016 3.984 12 N -0.330 5.330 13 C -0.392 4.392 14 H 0.084 0.916 15 C -0.244 4.244 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.206 1.206 21 C 0.050 3.950 22 C -0.147 4.147 23 C -0.161 4.161 24 C -0.021 4.021 25 N -0.380 5.380 26 C 0.308 3.692 27 O -0.436 6.436 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.014 0.986 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.006 0.994 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.159 0.841 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.124 0.876 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 5.309 -13.626 20.548 25.221 hybrid contribution -0.392 1.348 -0.863 1.648 sum 4.917 -12.279 19.685 23.716 Atomic orbital electron populations 1.21841 0.96718 1.02559 1.00660 1.21533 0.95359 0.89828 1.06144 1.21651 1.00073 0.98623 0.90944 1.19963 0.80220 0.83277 0.82216 1.90771 1.37844 1.34379 1.83567 1.49576 1.51709 1.32501 1.02962 1.23371 0.96635 0.91592 0.88871 1.21519 0.94062 0.96723 0.95131 1.23088 0.99028 0.98969 0.80651 1.21504 0.96867 0.96720 0.97671 1.21005 0.97606 0.93859 0.85959 1.44223 1.29336 1.51209 1.08263 1.19480 0.90215 1.42838 0.86664 0.91639 1.25914 0.97186 1.00844 1.00443 1.70139 1.14088 1.55714 1.18337 0.85355 0.78432 0.78380 0.78313 1.19778 1.22422 1.20558 1.20610 0.87351 0.89613 0.97400 1.21831 1.02146 0.97819 0.92896 1.22997 0.88351 1.06537 0.98245 1.22418 0.88757 1.00995 0.89974 1.46193 1.10351 1.61019 1.20475 1.20519 0.83927 0.77865 0.86898 1.90731 1.27771 1.49102 1.76017 0.89660 0.94550 0.95006 0.87099 0.87811 0.86698 0.87080 0.89648 0.93748 0.91687 0.89996 0.93040 0.98613 0.94231 0.92575 0.99446 0.90928 0.90501 0.84133 0.90396 0.87122 0.87577 0.74130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.38 71.98 0.68 -2.72 16 2 C -0.09 -1.28 4.89 30.60 0.15 -1.13 16 3 C -0.11 -2.12 0.39 -52.93 -0.02 -2.14 16 4 C 0.55 16.59 5.22 87.66 0.46 17.05 16 5 O -0.59 -25.15 16.14 15.64 0.25 -24.90 16 6 N -0.63 -16.07 3.38 -858.49 -2.90 -18.97 16 7 C 0.12 1.96 6.20 83.22 0.52 2.48 16 8 C -0.07 -1.91 0.83 -52.60 -0.04 -1.95 16 9 C 0.11 3.19 7.57 83.32 0.63 3.82 16 10 C -0.09 -2.52 5.26 30.56 0.16 -2.36 16 11 C 0.14 5.63 6.41 86.42 0.55 6.19 16 12 N -0.61 -28.92 2.95 -698.66 -2.06 -30.98 16 13 C -0.26 -13.82 9.55 84.03 0.80 -13.02 16 14 H 0.07 3.35 7.85 -2.91 -0.02 3.33 16 15 C -0.05 -2.63 5.04 84.86 0.43 -2.21 16 16 N -0.94 -54.41 11.06 21.65 0.24 -54.17 16 17 Si 0.97 43.55 29.57 68.60 2.03 45.58 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.18 7.88 5.22 86.42 0.45 8.33 16 22 C -0.11 -3.27 5.31 30.57 0.16 -3.11 16 23 C -0.12 -1.25 5.09 31.65 0.16 -1.08 16 24 C 0.10 0.64 7.78 86.83 0.68 1.31 16 25 N -0.72 -11.00 6.24 -459.82 -2.87 -13.87 16 26 C 0.52 13.55 6.59 87.90 0.58 14.13 16 27 O -0.56 -21.00 15.64 15.65 0.24 -20.75 16 28 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.04 1.01 6.56 -2.39 -0.02 0.99 16 30 H 0.03 0.81 7.28 -2.39 -0.02 0.79 16 31 H 0.11 0.92 7.12 -2.39 -0.02 0.90 16 32 H 0.10 0.93 8.13 -2.39 -0.02 0.92 16 33 H 0.12 1.13 6.39 -2.39 -0.02 1.11 16 34 H 0.11 1.42 8.09 -2.38 -0.02 1.40 16 35 H 0.09 2.50 8.06 -2.38 -0.02 2.48 16 36 H 0.04 1.62 7.53 -2.39 -0.02 1.61 16 37 H 0.06 1.68 7.95 -2.39 -0.02 1.66 16 38 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 40 H 0.00 -0.18 7.61 -2.39 -0.02 -0.20 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.06 2.90 6.04 -2.39 -0.01 2.89 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 46 H 0.14 0.32 6.94 -2.38 -0.02 0.31 16 47 H 0.08 1.04 7.91 -2.39 -0.02 1.02 16 48 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.42 5.17 8.96 -92.70 -0.83 4.34 16 Total: -1.00 -85.34 382.61 1.38 -83.96 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.11 Total: 10.52 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 6.34 Total: 23.58 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -7.59 Total: -117.99 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: 0.50 Total: -45.65 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -85.34 1.38 -83.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050551237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.431 kcal (2) G-P(sol) polarization free energy of solvation -85.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds