Wall clock time and date at job start Tue Mar 31 2020 19:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47297 * 2 1 4 4 N 1.30179 * 126.80512 * 269.68794 * 3 2 1 5 5 O 1.20927 * 111.60367 * 180.26116 * 4 3 2 6 6 C 1.34037 * 111.56699 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.77658 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47361 * 269.97837 * 7 6 5 9 9 C 1.35449 * 106.44977 * 0.02562 * 6 5 4 10 10 C 1.50702 * 128.00972 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.46965 * 269.95174 * 10 9 6 12 12 O 1.21284 * 120.00108 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00291 * 179.97438 * 11 10 9 14 14 C 1.47019 * 125.65476 * 179.71474 * 13 11 10 15 15 C 1.54334 * 107.27000 * 178.85541 * 14 13 11 16 16 H 1.08995 * 110.66441 * 96.52560 * 15 14 13 17 17 C 1.52996 * 110.84942 * 219.67658 * 15 14 13 18 18 C 1.55155 * 103.01706 * 338.14514 * 15 14 13 19 19 H 1.09004 * 111.00696 * 277.22937 * 18 15 14 20 20 N 1.46501 * 111.00226 * 153.38103 * 18 15 14 21 21 C 1.36945 * 119.99856 * 161.34534 * 20 18 15 22 22 H 1.07999 * 119.99744 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99893 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99972 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46881 * 60.00788 * 25 23 21 27 27 H 1.48504 * 109.47047 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47529 * 300.00561 * 25 23 21 29 29 C 1.47432 * 125.64258 * 0.03609 * 13 11 10 30 30 H 1.09009 * 109.46862 * 59.99974 * 1 2 3 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47275 * 299.99874 * 1 2 3 33 33 H 1.09004 * 109.47008 * 240.00083 * 2 1 3 34 34 H 1.08997 * 109.47129 * 120.00315 * 2 1 3 35 35 H 1.09000 * 109.46745 * 29.98111 * 7 6 5 36 36 H 1.08996 * 109.46815 * 149.97665 * 7 6 5 37 37 H 1.08995 * 109.46973 * 299.99705 * 8 7 6 38 38 H 1.09002 * 109.47012 * 59.99816 * 8 7 6 39 39 H 1.08996 * 109.47057 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.46696 * 29.95478 * 10 9 6 41 41 H 1.08998 * 109.47041 * 149.95550 * 10 9 6 42 42 H 1.09002 * 109.88221 * 298.40574 * 14 13 11 43 43 H 1.09005 * 109.87748 * 59.56270 * 14 13 11 44 44 H 1.09000 * 109.47051 * 173.68811 * 17 15 14 45 45 H 1.08997 * 109.47164 * 293.69141 * 17 15 14 46 46 H 1.08996 * 109.47117 * 53.69509 * 17 15 14 47 47 H 0.96997 * 119.99988 * 341.34706 * 20 18 15 48 48 H 0.97005 * 119.99981 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.36451 * 322.91767 * 29 13 11 50 50 H 1.08993 * 110.37018 * 85.13905 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2977 2.1542 -1.0423 5 8 2.6899 3.2532 -0.7252 6 6 2.7360 3.3945 0.6069 7 6 3.1711 4.6192 1.3698 8 6 4.6766 4.5481 1.6329 9 6 2.3144 2.2194 1.1321 10 6 2.1767 1.8491 2.5864 11 6 3.4684 1.2467 3.0758 12 8 4.4085 1.1301 2.3184 13 7 3.5795 0.8386 4.3555 14 6 4.7738 0.2312 4.9607 15 6 4.4465 -0.0438 6.4436 16 1 4.1278 -1.0769 6.5820 17 6 5.6491 0.2736 7.3346 18 6 3.2771 0.9346 6.7307 19 1 3.6501 1.9329 6.9599 20 7 2.4264 0.4330 7.8128 21 6 1.5871 1.2879 8.4763 22 1 1.5521 2.3318 8.2015 23 6 0.7807 0.8125 9.5012 24 7 0.8231 -0.4597 9.8357 25 14 -0.3636 1.9788 10.4067 26 1 -1.3228 2.5778 9.4441 27 1 -1.1104 1.2296 11.4490 28 1 0.4329 3.0560 11.0471 29 6 2.5212 0.9213 5.3786 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.9463 5.5108 0.7844 36 1 2.6380 4.6641 2.3194 37 1 4.9014 3.6566 2.2183 38 1 5.2097 4.5031 0.6832 39 1 4.9913 5.4341 2.1843 40 1 1.9485 2.7419 3.1685 41 1 1.3710 1.1241 2.7021 42 1 5.0127 -0.7029 4.4523 43 1 5.6159 0.9197 4.8903 44 1 5.3604 0.1797 8.3815 45 1 6.4572 -0.4245 7.1165 46 1 5.9862 1.2918 7.1407 47 1 2.4576 -0.5046 8.0593 48 1 0.2598 -0.7918 10.5522 49 1 1.9463 1.8392 5.2563 50 1 1.8656 0.0527 5.3172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054741040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:34 Heat of formation + Delta-G solvation = 17.110651 kcal Electronic energy + Delta-G solvation = -29933.275617 eV Core-core repulsion = 25963.396951 eV Total energy + Delta-G solvation = -3969.878666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.94116 -39.92177 -37.75464 -35.81356 -34.99771 -34.13319 -32.70334 -31.92796 -30.85047 -30.65694 -28.81293 -27.56951 -26.00448 -24.72537 -24.07828 -23.75204 -22.11678 -21.36468 -20.00574 -19.89126 -19.00033 -17.64768 -17.25252 -17.01518 -16.73616 -16.14389 -15.50173 -15.08602 -14.79651 -14.57973 -14.31549 -14.09862 -13.79819 -13.62719 -13.26147 -13.15795 -13.02885 -13.01230 -12.79851 -12.76285 -12.63467 -12.24786 -11.96384 -11.89388 -11.71456 -11.55407 -11.50609 -11.30400 -11.16991 -11.05651 -10.82155 -10.78680 -10.67323 -10.33862 -10.06186 -9.99982 -9.84036 -9.69709 -9.17487 -9.06551 -8.40676 -7.16128 -5.91828 -3.23087 1.42899 2.13590 2.74607 3.01708 3.24280 3.34701 3.40188 3.40998 4.07149 4.29821 4.44498 4.63469 4.66389 4.74144 4.88901 5.00239 5.01346 5.06471 5.08393 5.12331 5.16181 5.23141 5.24446 5.36343 5.47627 5.54961 5.58267 5.64282 5.66322 5.69018 5.69865 5.76356 5.82307 5.86473 5.89753 5.93160 5.95471 6.07751 6.12642 6.14830 6.18446 6.29137 6.39459 6.46772 6.55690 6.80017 7.55702 7.71859 8.25021 8.26510 8.30557 9.37626 9.90895 10.25699 11.29903 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.003008 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.362340 B = 9307.219043 C = 9807.765073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.039 3.961 4 N -0.369 5.369 5 O 0.095 5.905 6 C -0.017 4.017 7 C -0.042 4.042 8 C -0.151 4.151 9 C -0.174 4.174 10 C -0.060 4.060 11 C 0.527 3.473 12 O -0.544 6.544 13 N -0.613 5.613 14 C 0.118 3.882 15 C -0.114 4.114 16 H 0.084 0.916 17 C -0.134 4.134 18 C 0.178 3.822 19 H 0.065 0.935 20 N -0.710 5.710 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.070 3.930 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.387 0.613 48 H 0.258 0.742 49 H 0.069 0.931 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 5.254 -15.215 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.120 4.120 4 N -0.075 5.075 5 O 0.031 5.969 6 C -0.080 4.080 7 C -0.080 4.080 8 C -0.208 4.208 9 C -0.178 4.178 10 C -0.100 4.100 11 C 0.315 3.685 12 O -0.422 6.422 13 N -0.347 5.347 14 C -0.005 4.005 15 C -0.133 4.133 16 H 0.102 0.898 17 C -0.192 4.192 18 C 0.066 3.934 19 H 0.083 0.917 20 N -0.350 5.350 21 C -0.381 4.381 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.056 4.056 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.222 0.778 48 H 0.068 0.932 49 H 0.088 0.912 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.506 5.149 -16.907 18.239 hybrid contribution -0.826 0.113 1.415 1.642 sum 3.680 5.262 -15.492 16.770 Atomic orbital electron populations 1.21729 0.93846 1.02399 1.02410 1.19927 0.96309 0.88364 1.03862 1.23306 1.01498 0.98867 0.88372 1.73786 1.16921 0.92890 1.23875 1.84766 1.62744 1.26965 1.22404 1.24176 1.01308 0.98825 0.83724 1.20121 0.97840 0.91608 0.98416 1.21777 0.93413 1.03042 1.02576 1.20226 1.08008 0.93644 0.95949 1.19866 0.97038 1.02975 0.90104 1.20061 0.89470 0.78473 0.80471 1.90691 1.40499 1.56410 1.54555 1.48536 1.15984 1.60624 1.09530 1.21957 0.87917 0.97585 0.93027 1.22479 0.97178 1.01189 0.92482 0.89777 1.21664 0.96286 1.00764 1.00484 1.21344 0.89033 0.96181 0.86879 0.91696 1.42293 1.46276 1.09858 1.36614 1.19172 1.15179 0.91681 1.12105 0.91036 1.24755 1.00198 0.96095 0.99232 1.69645 1.42794 1.12721 1.32412 0.86281 0.80667 0.79857 0.79419 1.21124 1.21633 1.21132 1.23564 0.90833 1.01736 0.89452 0.92488 0.91553 0.92167 0.90145 0.89717 0.89491 0.88722 0.91371 0.92253 0.91482 0.87623 0.87588 0.92081 0.91695 0.91319 0.93192 0.92892 0.77824 0.93233 0.91229 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 2 C -0.05 -0.52 6.44 -27.89 -0.18 -0.70 16 3 C 0.04 0.53 6.58 -82.10 -0.54 -0.01 16 4 N -0.37 -5.44 12.07 33.43 0.40 -5.03 16 5 O 0.09 1.31 11.20 17.18 0.19 1.50 16 6 C -0.02 -0.20 6.74 -35.30 -0.24 -0.44 16 7 C -0.04 -0.38 6.35 -27.88 -0.18 -0.55 16 8 C -0.15 -1.45 9.89 37.16 0.37 -1.09 16 9 C -0.17 -2.25 4.81 -104.42 -0.50 -2.76 16 10 C -0.06 -0.71 5.03 -29.04 -0.15 -0.86 16 11 C 0.53 7.72 7.84 -10.99 -0.09 7.63 16 12 O -0.54 -9.58 15.76 5.55 0.09 -9.49 16 13 N -0.61 -8.86 3.33 -170.51 -0.57 -9.43 16 14 C 0.12 1.66 6.48 -3.06 -0.02 1.64 16 15 C -0.11 -1.66 3.16 -88.78 -0.28 -1.94 16 16 H 0.08 1.28 7.99 -51.93 -0.42 0.86 16 17 C -0.13 -1.80 9.16 37.16 0.34 -1.46 16 18 C 0.18 3.06 3.14 -65.78 -0.21 2.86 16 19 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 20 N -0.71 -15.68 5.28 -51.35 -0.27 -15.96 16 21 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 24 N -0.93 -26.08 13.06 55.49 0.72 -25.36 16 25 Si 0.91 20.84 29.55 -169.99 -5.02 15.81 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.07 1.07 6.38 -2.52 -0.02 1.06 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.74 7.44 -51.93 -0.39 0.35 16 37 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.11 1.07 7.15 -51.93 -0.37 0.70 16 41 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.90 7.77 -51.93 -0.40 0.49 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 47 H 0.39 9.22 7.71 -40.82 -0.31 8.91 16 48 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.07 1.00 7.48 -51.93 -0.39 0.62 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -30.32 410.13 -8.39 -38.71 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.55 Total: 7.35 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.56 Total: -4.28 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.29 Total: -55.77 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.28 Total: -7.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.32 -8.39 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054741040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.818 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds