Wall clock time and date at job start Tue Mar 31 2020 19:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47297 * 2 1 4 4 N 1.30179 * 126.80512 * 269.68794 * 3 2 1 5 5 O 1.20927 * 111.60367 * 180.26116 * 4 3 2 6 6 C 1.34037 * 111.56699 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.77658 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47361 * 269.97837 * 7 6 5 9 9 C 1.35449 * 106.44977 * 0.02562 * 6 5 4 10 10 C 1.50702 * 128.00972 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.46965 * 269.95174 * 10 9 6 12 12 O 1.21284 * 120.00108 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00291 * 179.97438 * 11 10 9 14 14 C 1.47019 * 125.65476 * 179.71474 * 13 11 10 15 15 C 1.54334 * 107.27000 * 178.85541 * 14 13 11 16 16 H 1.08995 * 110.66441 * 96.52560 * 15 14 13 17 17 C 1.52996 * 110.84942 * 219.67658 * 15 14 13 18 18 C 1.55155 * 103.01706 * 338.14514 * 15 14 13 19 19 H 1.09004 * 111.00696 * 277.22937 * 18 15 14 20 20 N 1.46501 * 111.00226 * 153.38103 * 18 15 14 21 21 C 1.36945 * 119.99856 * 161.34534 * 20 18 15 22 22 H 1.07999 * 119.99744 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99893 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99972 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00027 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46881 * 60.00788 * 25 23 21 27 27 H 1.48504 * 109.47047 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47529 * 300.00561 * 25 23 21 29 29 C 1.47432 * 125.64258 * 0.03609 * 13 11 10 30 30 H 1.09009 * 109.46862 * 59.99974 * 1 2 3 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47275 * 299.99874 * 1 2 3 33 33 H 1.09004 * 109.47008 * 240.00083 * 2 1 3 34 34 H 1.08997 * 109.47129 * 120.00315 * 2 1 3 35 35 H 1.09000 * 109.46745 * 29.98111 * 7 6 5 36 36 H 1.08996 * 109.46815 * 149.97665 * 7 6 5 37 37 H 1.08995 * 109.46973 * 299.99705 * 8 7 6 38 38 H 1.09002 * 109.47012 * 59.99816 * 8 7 6 39 39 H 1.08996 * 109.47057 * 179.97438 * 8 7 6 40 40 H 1.08997 * 109.46696 * 29.95478 * 10 9 6 41 41 H 1.08998 * 109.47041 * 149.95550 * 10 9 6 42 42 H 1.09002 * 109.88221 * 298.40574 * 14 13 11 43 43 H 1.09005 * 109.87748 * 59.56270 * 14 13 11 44 44 H 1.09000 * 109.47051 * 173.68811 * 17 15 14 45 45 H 1.08997 * 109.47164 * 293.69141 * 17 15 14 46 46 H 1.08996 * 109.47117 * 53.69509 * 17 15 14 47 47 H 0.96997 * 119.99988 * 341.34706 * 20 18 15 48 48 H 0.97005 * 119.99981 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.36451 * 322.91767 * 29 13 11 50 50 H 1.08993 * 110.37018 * 85.13905 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2977 2.1542 -1.0423 5 8 2.6899 3.2532 -0.7252 6 6 2.7360 3.3945 0.6069 7 6 3.1711 4.6192 1.3698 8 6 4.6766 4.5481 1.6329 9 6 2.3144 2.2194 1.1321 10 6 2.1767 1.8491 2.5864 11 6 3.4684 1.2467 3.0758 12 8 4.4085 1.1301 2.3184 13 7 3.5795 0.8386 4.3555 14 6 4.7738 0.2312 4.9607 15 6 4.4465 -0.0438 6.4436 16 1 4.1278 -1.0769 6.5820 17 6 5.6491 0.2736 7.3346 18 6 3.2771 0.9346 6.7307 19 1 3.6501 1.9329 6.9599 20 7 2.4264 0.4330 7.8128 21 6 1.5871 1.2879 8.4763 22 1 1.5521 2.3318 8.2015 23 6 0.7807 0.8125 9.5012 24 7 0.8231 -0.4597 9.8357 25 14 -0.3636 1.9788 10.4067 26 1 -1.3228 2.5778 9.4441 27 1 -1.1104 1.2296 11.4490 28 1 0.4329 3.0560 11.0471 29 6 2.5212 0.9213 5.3786 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.9463 5.5108 0.7844 36 1 2.6380 4.6641 2.3194 37 1 4.9014 3.6566 2.2183 38 1 5.2097 4.5031 0.6832 39 1 4.9913 5.4341 2.1843 40 1 1.9485 2.7419 3.1685 41 1 1.3710 1.1241 2.7021 42 1 5.0127 -0.7029 4.4523 43 1 5.6159 0.9197 4.8903 44 1 5.3604 0.1797 8.3815 45 1 6.4572 -0.4245 7.1165 46 1 5.9862 1.2918 7.1407 47 1 2.4576 -0.5046 8.0593 48 1 0.2598 -0.7918 10.5522 49 1 1.9463 1.8392 5.2563 50 1 1.8656 0.0527 5.3172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054741040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:33 Heat of formation + Delta-G solvation = 0.591068 kcal Electronic energy + Delta-G solvation = -29933.991960 eV Core-core repulsion = 25963.396951 eV Total energy + Delta-G solvation = -3970.595009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.94043 -41.13553 -39.02625 -36.79234 -35.86677 -35.77671 -34.00184 -32.87222 -32.44080 -31.65092 -29.80142 -29.05947 -27.11035 -25.81633 -25.57823 -24.58351 -23.30263 -22.57711 -21.29337 -20.85436 -20.13600 -19.05158 -18.67701 -18.03858 -17.88735 -17.41296 -16.55311 -16.46890 -15.90627 -15.73100 -15.37159 -15.24747 -15.11056 -14.61910 -14.52419 -14.45758 -14.25173 -14.07540 -13.95491 -13.74664 -13.51494 -13.26014 -13.12973 -13.01561 -12.84750 -12.75910 -12.69418 -12.42756 -12.32311 -12.22333 -12.12244 -12.07921 -11.95607 -11.69431 -11.65612 -11.35506 -11.15063 -10.90821 -10.77662 -10.13468 -9.64928 -8.99325 -7.89724 -5.19027 0.46888 1.13332 1.54742 1.55527 1.59998 1.61437 2.02977 2.18171 2.61346 3.13677 3.40683 3.42451 3.45467 3.71058 3.82717 3.86244 3.94851 3.98845 4.08844 4.20903 4.24924 4.28321 4.30731 4.37924 4.42065 4.43844 4.50527 4.53064 4.61487 4.67986 4.72220 4.84093 4.91680 4.92988 4.94103 4.96700 5.03453 5.05093 5.11928 5.12963 5.17264 5.24512 5.27006 5.34240 5.38472 5.48897 5.60853 6.30919 6.53142 7.13863 7.28323 7.39291 8.11161 8.34740 9.32957 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.003008 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.362340 B = 9307.219043 C = 9807.765073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.029 3.971 4 N -0.396 5.396 5 O 0.084 5.916 6 C -0.013 4.013 7 C -0.042 4.042 8 C -0.146 4.146 9 C -0.191 4.191 10 C -0.054 4.054 11 C 0.529 3.471 12 O -0.574 6.574 13 N -0.611 5.611 14 C 0.121 3.879 15 C -0.104 4.104 16 H 0.077 0.923 17 C -0.129 4.129 18 C 0.172 3.828 19 H 0.065 0.935 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.967 5.967 25 Si 0.965 3.035 26 H -0.276 1.276 27 H -0.303 1.303 28 H -0.280 1.280 29 C 0.084 3.916 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.084 0.916 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 6.850 -15.613 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.130 4.130 4 N -0.104 5.104 5 O 0.022 5.978 6 C -0.077 4.077 7 C -0.080 4.080 8 C -0.203 4.203 9 C -0.195 4.195 10 C -0.094 4.094 11 C 0.319 3.681 12 O -0.454 6.454 13 N -0.344 5.344 14 C -0.002 4.002 15 C -0.124 4.124 16 H 0.095 0.905 17 C -0.187 4.187 18 C 0.061 3.939 19 H 0.083 0.917 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.617 5.617 25 Si 0.795 3.205 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.206 1.206 29 C -0.042 4.042 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.209 0.791 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.400 6.792 -17.343 19.139 hybrid contribution -0.667 -0.365 1.463 1.649 sum 3.733 6.427 -15.880 17.534 Atomic orbital electron populations 1.21692 0.92335 1.03447 1.02263 1.20015 0.97573 0.87221 1.03762 1.23758 1.00987 0.99711 0.88535 1.73772 1.18315 0.93521 1.24771 1.84729 1.62931 1.26784 1.23340 1.24809 0.99889 0.99763 0.83217 1.20339 0.97357 0.91110 0.99150 1.21728 0.93882 1.02745 1.01987 1.20410 1.08860 0.93943 0.96275 1.19903 0.95691 1.04070 0.89699 1.20483 0.89962 0.77746 0.79905 1.90685 1.41885 1.57666 1.55191 1.48519 1.15775 1.60569 1.09525 1.21940 0.88062 0.97899 0.92288 1.22385 0.96697 1.00080 0.93206 0.90493 1.21621 0.96293 1.01958 0.98828 1.21501 0.89455 0.96572 0.86366 0.91732 1.42401 1.46685 1.09051 1.37840 1.19572 1.14059 0.92345 1.11067 0.90020 1.25451 1.02445 0.97300 1.00848 1.69794 1.44202 1.14434 1.33301 0.85341 0.79023 0.78037 0.78114 1.20165 1.22926 1.20612 1.23236 0.90502 1.02121 0.88328 0.92948 0.89912 0.91937 0.90209 0.89794 0.87107 0.86945 0.94108 0.93036 0.89184 0.85353 0.86305 0.91867 0.91056 0.93323 0.91146 0.91970 0.79147 0.94146 0.89773 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.05 -1.03 6.44 29.85 0.19 -0.84 16 3 C 0.03 0.77 6.58 43.58 0.29 1.06 16 4 N -0.40 -11.59 12.07 -49.54 -0.60 -12.19 16 5 O 0.08 2.26 11.20 71.65 0.80 3.06 16 6 C -0.01 -0.30 6.74 25.04 0.17 -0.13 16 7 C -0.04 -0.64 6.35 29.85 0.19 -0.45 16 8 C -0.15 -2.54 9.89 71.98 0.71 -1.83 16 9 C -0.19 -4.67 4.81 -19.73 -0.10 -4.77 16 10 C -0.05 -1.16 5.03 29.10 0.15 -1.02 16 11 C 0.53 14.58 7.84 87.66 0.69 15.27 16 12 O -0.57 -19.68 15.76 -3.04 -0.05 -19.72 16 13 N -0.61 -16.48 3.33 -811.75 -2.70 -19.18 16 14 C 0.12 3.19 6.48 86.73 0.56 3.75 16 15 C -0.10 -2.91 3.16 -9.60 -0.03 -2.94 16 16 H 0.08 2.29 7.99 -2.39 -0.02 2.27 16 17 C -0.13 -3.27 9.16 71.98 0.66 -2.61 16 18 C 0.17 5.65 3.14 46.38 0.15 5.80 16 19 H 0.06 2.16 8.04 -2.38 -0.02 2.14 16 20 N -0.72 -31.40 5.28 -316.37 -1.67 -33.07 16 21 C -0.24 -11.68 9.98 84.03 0.84 -10.84 16 22 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 24 N -0.97 -55.03 13.06 21.65 0.28 -54.75 16 25 Si 0.97 42.52 29.55 68.60 2.03 44.55 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.08 2.39 6.38 86.85 0.55 2.95 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.35 7.44 -2.39 -0.02 1.34 16 37 H 0.04 0.94 7.53 -2.39 -0.02 0.92 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 2.17 7.15 -2.39 -0.02 2.15 16 41 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.82 7.77 -2.38 -0.02 1.80 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 47 H 0.38 18.03 7.71 -92.71 -0.71 17.32 16 48 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 49 H 0.08 2.17 7.48 -2.39 -0.02 2.16 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.41 410.13 4.51 -60.90 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.21 Total: 31.81 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.20 Total: -1.41 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.68 Total: -119.19 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.75 Total: -16.67 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.41 4.51 -60.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054741040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.493 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds