Wall clock time and date at job start Tue Mar 31 2020 19:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47062 * 2 1 4 4 N 1.30172 * 126.80326 * 269.97402 * 3 2 1 5 5 O 1.20924 * 111.60656 * 180.02562 * 4 3 2 6 6 C 1.34047 * 111.56319 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.77182 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47444 * 269.96154 * 7 6 5 9 9 C 1.35447 * 106.44898 * 0.02562 * 6 5 4 10 10 C 1.50701 * 128.00779 * 180.26015 * 9 6 5 11 11 C 1.50699 * 109.47112 * 269.67457 * 10 9 6 12 12 O 1.21281 * 119.99931 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00194 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.64739 * 179.71547 * 13 11 10 15 15 C 1.55134 * 104.71952 * 155.81975 * 14 13 11 16 16 H 1.08998 * 111.22278 * 279.17361 * 15 14 13 17 17 C 1.53003 * 110.90832 * 155.27537 * 15 14 13 18 18 C 1.55158 * 101.48688 * 37.29219 * 15 14 13 19 19 H 1.09002 * 110.71844 * 205.97001 * 18 15 14 20 20 N 1.46498 * 110.71854 * 82.69647 * 18 15 14 21 21 C 1.36939 * 120.00178 * 160.01780 * 20 18 15 22 22 H 1.08008 * 119.99491 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00343 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99778 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00222 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46620 * 0.02562 * 25 23 21 27 27 H 1.48490 * 109.47252 * 120.00457 * 25 23 21 28 28 H 1.48497 * 109.46897 * 240.00620 * 25 23 21 29 29 C 1.47016 * 125.64575 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.47789 * 59.99709 * 1 2 3 31 31 H 1.09001 * 109.47536 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46887 * 299.99807 * 1 2 3 33 33 H 1.08997 * 109.47156 * 240.00250 * 2 1 3 34 34 H 1.09009 * 109.47524 * 119.99981 * 2 1 3 35 35 H 1.08998 * 109.47545 * 29.96462 * 7 6 5 36 36 H 1.09001 * 109.47073 * 149.96550 * 7 6 5 37 37 H 1.08995 * 109.47374 * 180.02562 * 8 7 6 38 38 H 1.09007 * 109.46764 * 300.00552 * 8 7 6 39 39 H 1.09001 * 109.46661 * 60.00144 * 8 7 6 40 40 H 1.08997 * 109.47073 * 29.67351 * 10 9 6 41 41 H 1.09002 * 109.47300 * 149.67174 * 10 9 6 42 42 H 1.08997 * 110.36410 * 274.74442 * 14 13 11 43 43 H 1.08997 * 110.37151 * 37.07241 * 14 13 11 44 44 H 1.09003 * 109.46477 * 307.97298 * 17 15 14 45 45 H 1.08999 * 109.46834 * 67.97051 * 17 15 14 46 46 H 1.08997 * 109.46796 * 187.97464 * 17 15 14 47 47 H 0.97001 * 120.00407 * 340.02740 * 20 18 15 48 48 H 0.97004 * 119.99948 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.88384 * 300.44116 * 29 13 11 50 50 H 1.09004 * 109.88488 * 61.60541 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2926 2.1559 -1.0423 5 8 2.6819 3.2560 -0.7253 6 6 2.7308 3.3964 0.6069 7 6 3.1636 4.6219 1.3696 8 6 4.6700 4.5554 1.6294 9 6 2.3143 2.2194 1.1321 10 6 2.1768 1.8492 2.5864 11 6 3.4687 1.2471 3.0758 12 8 4.4084 1.1298 2.3182 13 7 3.5799 0.8391 4.3555 14 6 4.7777 0.2303 4.9622 15 6 4.6416 0.5207 6.4801 16 1 4.9661 1.5335 6.7187 17 6 5.4169 -0.5089 7.3046 18 6 3.1123 0.3629 6.6889 19 1 2.7769 0.9516 7.5428 20 7 2.7551 -1.0478 6.8578 21 6 1.5675 -1.3875 7.4490 22 1 0.8940 -0.6152 7.7905 23 6 1.2288 -2.7241 7.6086 24 7 2.0494 -3.6652 7.1920 25 14 -0.3915 -3.1874 8.4145 26 1 -1.1278 -1.9537 8.7904 27 1 -1.2092 -3.9805 7.4620 28 1 -0.1257 -3.9959 9.6313 29 6 2.5246 0.9214 5.3758 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.9347 5.5132 0.7854 36 1 2.6325 4.6645 2.3205 37 1 4.9830 5.4416 2.1815 38 1 4.8989 3.6641 2.2137 39 1 5.2011 4.5129 0.6785 40 1 1.9485 2.7419 3.1686 41 1 1.3712 1.1241 2.7022 42 1 4.7914 -0.8440 4.7789 43 1 5.6810 0.6950 4.5671 44 1 5.1243 -1.5135 6.9993 45 1 6.4861 -0.3758 7.1395 46 1 5.1925 -0.3707 8.3622 47 1 3.3598 -1.7414 6.5509 48 1 1.8129 -4.5993 7.3038 49 1 2.2248 1.9600 5.5161 50 1 1.6659 0.3236 5.0702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054741055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:43 Heat of formation + Delta-G solvation = 20.995657 kcal Electronic energy + Delta-G solvation = -30221.677813 eV Core-core repulsion = 26251.967614 eV Total energy + Delta-G solvation = -3969.710200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.89626 -39.86219 -37.77691 -35.74727 -34.97016 -33.97954 -32.56553 -31.86104 -30.71575 -30.49394 -28.76363 -27.74576 -25.88603 -24.66174 -23.94576 -23.72680 -22.38397 -21.52351 -19.87150 -19.34428 -18.84625 -17.70259 -17.48272 -16.98994 -16.57410 -15.90263 -15.42249 -15.10043 -14.64725 -14.54412 -14.30682 -14.23167 -13.80609 -13.69458 -13.22137 -13.13020 -12.99953 -12.93276 -12.74738 -12.57262 -12.28785 -12.09673 -11.96312 -11.83878 -11.61340 -11.48378 -11.46319 -11.29077 -11.16116 -10.99092 -10.83208 -10.75118 -10.52454 -10.28704 -10.02044 -9.91877 -9.73242 -9.62803 -9.14242 -9.04586 -8.29065 -7.12470 -5.89550 -3.19857 1.46827 2.19580 2.84178 3.06102 3.35102 3.35830 3.41034 3.43620 4.13868 4.34069 4.47563 4.69005 4.69892 4.77125 4.95311 5.00957 5.04157 5.12519 5.15987 5.20425 5.27357 5.29902 5.30755 5.40761 5.46369 5.57060 5.59986 5.65032 5.71047 5.73203 5.80312 5.83976 5.87832 5.90715 5.97724 6.00104 6.10909 6.13409 6.18375 6.20921 6.29668 6.31414 6.47388 6.58432 6.69780 6.87709 7.58727 7.83603 8.28178 8.31611 8.40102 9.40418 9.95022 10.29544 11.32492 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003378 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.935186 B = 8287.880541 C = 9716.709706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.041 3.959 4 N -0.369 5.369 5 O 0.095 5.905 6 C -0.021 4.021 7 C -0.040 4.040 8 C -0.151 4.151 9 C -0.172 4.172 10 C -0.059 4.059 11 C 0.527 3.473 12 O -0.545 6.545 13 N -0.606 5.606 14 C 0.116 3.884 15 C -0.114 4.114 16 H 0.078 0.922 17 C -0.131 4.131 18 C 0.172 3.828 19 H 0.070 0.930 20 N -0.712 5.712 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.069 3.931 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.387 0.613 48 H 0.256 0.744 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 15.266 -8.278 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.118 4.118 4 N -0.075 5.075 5 O 0.031 5.969 6 C -0.084 4.084 7 C -0.078 4.078 8 C -0.208 4.208 9 C -0.176 4.176 10 C -0.099 4.099 11 C 0.315 3.685 12 O -0.423 6.423 13 N -0.340 5.340 14 C -0.006 4.006 15 C -0.134 4.134 16 H 0.097 0.903 17 C -0.189 4.189 18 C 0.060 3.940 19 H 0.088 0.912 20 N -0.353 5.353 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.057 4.057 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.223 0.777 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.894 14.994 -9.990 18.117 hybrid contribution -0.862 -0.743 1.099 1.582 sum 1.033 14.251 -8.892 16.829 Atomic orbital electron populations 1.21718 0.93850 1.02505 1.02209 1.19951 0.96320 0.88293 1.04074 1.23330 1.01309 0.98885 0.88315 1.73782 1.17033 0.92807 1.23874 1.84765 1.62882 1.26913 1.22358 1.24142 1.01677 0.98798 0.83802 1.20091 0.97778 0.91617 0.98314 1.21783 0.93469 1.02956 1.02630 1.20236 1.07821 0.93541 0.96011 1.19863 0.97286 1.02754 0.90029 1.20003 0.89388 0.78533 0.80549 1.90689 1.40523 1.56737 1.54339 1.48441 1.15799 1.60273 1.09439 1.22290 0.87722 0.98251 0.92365 1.22653 0.97299 0.99738 0.93669 0.90321 1.21548 0.97783 0.99609 0.99978 1.21191 0.91070 0.88444 0.93285 0.91227 1.42465 1.21948 0.99808 1.71118 1.19262 0.95626 0.91394 1.31554 0.90938 1.24744 0.98473 0.95740 1.01434 1.69667 1.36603 0.99494 1.51791 0.86150 0.83271 0.78170 0.78739 1.20478 1.21859 1.21817 1.23318 0.91566 0.99899 0.90932 0.92593 0.91452 0.92242 0.90124 0.89500 0.89568 0.88883 0.91586 0.91343 0.92217 0.87927 0.87514 0.91290 0.91384 0.91213 0.93676 0.92089 0.77721 0.93397 0.92693 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.15 0.37 -1.19 16 2 C -0.05 -0.62 6.44 -27.89 -0.18 -0.80 16 3 C 0.04 0.59 6.58 -82.10 -0.54 0.05 16 4 N -0.37 -5.69 12.07 33.43 0.40 -5.29 16 5 O 0.09 1.34 11.20 17.16 0.19 1.53 16 6 C -0.02 -0.26 6.74 -35.31 -0.24 -0.49 16 7 C -0.04 -0.35 6.35 -27.88 -0.18 -0.53 16 8 C -0.15 -1.43 9.90 37.16 0.37 -1.06 16 9 C -0.17 -2.33 4.81 -104.42 -0.50 -2.83 16 10 C -0.06 -0.74 5.22 -29.03 -0.15 -0.89 16 11 C 0.53 8.25 7.84 -10.99 -0.09 8.16 16 12 O -0.54 -10.23 15.72 5.56 0.09 -10.15 16 13 N -0.61 -9.40 3.32 -170.38 -0.57 -9.96 16 14 C 0.12 1.82 6.35 -2.41 -0.02 1.81 16 15 C -0.11 -1.66 3.53 -88.35 -0.31 -1.97 16 16 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.13 -1.97 8.85 37.16 0.33 -1.64 16 18 C 0.17 2.93 3.37 -66.10 -0.22 2.70 16 19 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 20 N -0.71 -15.70 4.61 -51.65 -0.24 -15.94 16 21 C -0.25 -6.18 9.98 -15.06 -0.15 -6.34 16 22 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 25 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.07 1.05 6.23 -3.07 -0.02 1.03 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.67 7.44 -51.93 -0.39 0.29 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.01 7.44 -51.93 -0.39 0.62 16 41 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 43 H 0.07 1.03 8.03 -51.93 -0.42 0.62 16 44 H 0.07 1.23 6.37 -51.93 -0.33 0.89 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.39 9.28 6.10 -40.82 -0.25 9.03 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 50 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -30.90 407.53 -8.36 -39.27 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.46 Total: 8.27 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.63 Total: -4.27 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.32 Total: -56.80 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.28 Total: -8.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.90 -8.36 -39.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054741055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.263 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds