Wall clock time and date at job start Tue Mar 31 2020 19:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47077 * 2 1 4 4 C 1.36770 * 125.80068 * 270.00368 * 3 2 1 5 5 C 1.47262 * 126.94209 * 359.94232 * 4 3 2 6 6 O 1.21618 * 120.00207 * 0.02562 * 5 4 3 7 7 N 1.34787 * 119.99788 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99728 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47100 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.46926 * 305.00274 * 9 8 7 11 11 C 1.54803 * 109.47126 * 185.00698 * 9 8 7 12 12 N 1.45123 * 109.54132 * 172.10868 * 11 9 8 13 13 C 1.36939 * 118.75813 * 269.29122 * 12 11 9 14 14 H 1.08003 * 119.99493 * 139.40556 * 13 12 11 15 15 C 1.38807 * 120.00013 * 319.40235 * 13 12 11 16 16 N 1.31618 * 119.99772 * 156.47177 * 15 13 12 17 17 Si 1.86792 * 120.00094 * 336.47872 * 15 13 12 18 18 H 1.48503 * 109.47660 * 95.52307 * 17 15 13 19 19 H 1.48503 * 109.47052 * 215.52465 * 17 15 13 20 20 H 1.48495 * 109.47132 * 335.51843 * 17 15 13 21 21 C 1.47511 * 122.48278 * 89.28894 * 12 11 9 22 22 C 1.53576 * 111.02679 * 318.37658 * 21 12 11 23 23 C 1.51529 * 109.58074 * 320.02175 * 22 21 12 24 24 O 1.38015 * 109.46822 * 64.99869 * 9 8 7 25 25 C 1.46694 * 106.11734 * 179.97438 * 4 3 2 26 26 C 1.34492 * 106.32737 * 359.77674 * 25 4 3 27 27 N 1.34659 * 125.80296 * 89.97662 * 3 2 1 28 28 C 1.46502 * 124.84802 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47438 * 60.00432 * 1 2 3 30 30 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47294 * 299.99349 * 1 2 3 32 32 H 1.09006 * 109.46993 * 240.00293 * 2 1 3 33 33 H 1.08998 * 109.47216 * 120.00071 * 2 1 3 34 34 H 0.96992 * 119.99714 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47424 * 299.99439 * 8 7 5 36 36 H 1.09001 * 109.47434 * 59.99820 * 8 7 5 37 37 H 1.09004 * 109.46275 * 292.13487 * 11 9 8 38 38 H 1.08997 * 109.46151 * 52.09056 * 11 9 8 39 39 H 0.96998 * 120.00372 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.16541 * 197.97796 * 21 12 11 41 41 H 1.08998 * 109.12412 * 78.74693 * 21 12 11 42 42 H 1.09007 * 109.45008 * 199.98784 * 22 21 12 43 43 H 1.08996 * 109.45121 * 80.05654 * 22 21 12 44 44 H 1.09008 * 109.59319 * 331.61453 * 23 22 21 45 45 H 1.09008 * 109.59178 * 211.18550 * 23 22 21 46 46 H 1.07994 * 126.83373 * 179.97438 * 25 4 3 47 47 H 1.07999 * 125.56606 * 180.21157 * 26 25 4 48 48 H 1.08998 * 109.46579 * 90.00412 * 28 27 3 49 49 H 1.09005 * 109.46793 * 209.99793 * 28 27 3 50 50 H 1.08994 * 109.47153 * 330.00039 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2989 2.1751 -1.1093 5 6 2.1543 1.7629 -2.5156 6 8 1.7595 0.6443 -2.7839 7 7 2.4595 2.6253 -3.5055 8 6 2.3152 2.2154 -4.9045 9 6 2.7235 3.3716 -5.8194 10 1 2.1440 4.2588 -5.5644 11 6 2.4520 2.9840 -7.2933 12 7 2.6612 4.1398 -8.1457 13 6 1.5995 4.9624 -8.4126 14 1 1.7371 6.0335 -8.4288 15 6 0.3466 4.4197 -8.6622 16 7 -0.7352 5.1425 -8.4630 17 14 0.1957 2.6636 -9.2806 18 1 -0.0422 1.7528 -8.1320 19 1 -0.9416 2.5694 -10.2309 20 1 1.4510 2.2723 -9.9708 21 6 3.9744 4.4618 -8.7354 22 6 5.1037 4.2446 -7.7175 23 6 4.6564 4.7260 -6.3522 24 8 4.0678 3.6368 -5.6535 25 6 2.7587 3.4775 -0.6152 26 6 2.7275 3.4051 0.7274 27 7 2.2945 2.1636 1.0921 28 6 2.1316 1.7064 2.4744 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.7740 3.5175 -3.2914 35 1 2.9549 1.3545 -5.0988 36 1 1.2767 1.9476 -5.0994 37 1 3.1324 2.1858 -7.5902 38 1 1.4227 2.6398 -7.3946 39 1 -1.6108 4.7634 -8.6378 40 1 3.9769 5.5037 -9.0558 41 1 4.1442 3.8210 -9.6005 42 1 5.9857 4.8044 -8.0289 43 1 5.3471 3.1834 -7.6665 44 1 3.9236 5.5246 -6.4682 45 1 5.5172 5.0953 -5.7947 46 1 3.0591 4.3267 -1.2110 47 1 3.0028 4.1989 1.4059 48 1 3.0601 1.2502 2.8178 49 1 1.8869 2.5562 3.1117 50 1 1.3269 0.9728 2.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073766252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:17 Heat of formation + Delta-G solvation = -10.962271 kcal Electronic energy + Delta-G solvation = -29911.787691 eV Core-core repulsion = 25940.691692 eV Total energy + Delta-G solvation = -3971.095999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47726 -39.32762 -38.46696 -35.28696 -34.58602 -33.66057 -33.00150 -32.41682 -31.41226 -28.98676 -28.30104 -26.95717 -25.93984 -25.06965 -23.61407 -22.69367 -21.85452 -21.00537 -20.05229 -19.60698 -18.97566 -17.47437 -16.93059 -16.25387 -16.01122 -15.78215 -15.70476 -15.38176 -14.72207 -14.51536 -14.44077 -14.17783 -14.08414 -13.73911 -13.44668 -13.20037 -13.07102 -12.93322 -12.67895 -12.58828 -12.40232 -12.30980 -12.19513 -11.97385 -11.94276 -11.55486 -11.46636 -11.09604 -11.00319 -10.74295 -10.44762 -10.37603 -10.01330 -9.71790 -9.68400 -9.52225 -8.89739 -8.78885 -8.57837 -8.49587 -8.19633 -6.80795 -6.05327 -3.49101 1.79276 2.36861 2.64362 3.32148 3.46876 3.53209 3.69488 3.79406 4.19105 4.43988 4.49944 4.52639 4.76607 4.78241 4.91727 4.93894 5.04868 5.24688 5.26731 5.27206 5.39983 5.44073 5.49035 5.55092 5.67426 5.73141 5.77129 5.83005 5.91048 5.96806 6.05185 6.08338 6.12659 6.16523 6.18394 6.29772 6.40405 6.45316 6.53487 6.67092 6.71168 6.78100 6.83104 6.87291 6.97984 7.11475 7.96782 8.04033 8.18938 8.36589 8.66429 8.97740 9.66844 10.05524 11.09613 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003003 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.603436 B = 9323.037988 C =10245.291037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C 0.105 3.895 4 C -0.229 4.229 5 C 0.588 3.412 6 O -0.557 6.557 7 N -0.714 5.714 8 C 0.134 3.866 9 C 0.072 3.928 10 H 0.063 0.937 11 C 0.119 3.881 12 N -0.604 5.604 13 C -0.282 4.282 14 H 0.076 0.924 15 C 0.043 3.957 16 N -0.893 5.893 17 Si 0.872 3.128 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.269 1.269 21 C 0.144 3.856 22 C -0.168 4.168 23 C 0.086 3.914 24 O -0.393 6.393 25 C -0.164 4.164 26 C -0.022 4.022 27 N -0.447 5.447 28 C 0.068 3.932 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.146 0.854 47 H 0.166 0.834 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 -5.160 20.758 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.012 4.012 4 C -0.239 4.239 5 C 0.376 3.624 6 O -0.438 6.438 7 N -0.364 5.364 8 C 0.009 3.991 9 C 0.010 3.990 10 H 0.081 0.919 11 C -0.009 4.009 12 N -0.327 5.327 13 C -0.410 4.410 14 H 0.094 0.906 15 C -0.159 4.159 16 N -0.533 5.533 17 Si 0.701 3.299 18 H -0.209 1.209 19 H -0.227 1.227 20 H -0.194 1.194 21 C 0.019 3.981 22 C -0.207 4.207 23 C 0.010 3.990 24 O -0.312 6.312 25 C -0.188 4.188 26 C -0.148 4.148 27 N -0.123 5.123 28 C -0.074 4.074 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.164 0.836 47 H 0.183 0.817 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.047 -6.101 20.945 23.253 hybrid contribution -0.190 -0.125 -0.476 0.527 sum 7.857 -6.227 20.470 22.793 Atomic orbital electron populations 1.21652 0.94165 1.01927 1.02038 1.20308 0.96567 0.89294 1.03961 1.20293 1.01197 0.94571 0.85130 1.20176 1.15573 0.95995 0.92107 1.17333 0.76738 0.84293 0.84013 1.90707 1.48019 1.20561 1.84488 1.45707 1.67694 1.17140 1.05848 1.21381 1.01443 0.97132 0.79102 1.22499 0.82742 0.97011 0.96712 0.91920 1.21829 0.99989 0.90159 0.88902 1.44020 1.06409 1.29246 1.53023 1.18785 0.86530 0.90144 1.45588 0.90597 1.25521 0.95582 0.97411 0.97397 1.69883 0.97683 1.37903 1.47858 0.87001 0.77353 0.86378 0.79181 1.20943 1.22663 1.19369 1.21256 0.84578 0.99172 0.93065 1.22563 0.99032 1.01822 0.97242 1.21993 0.96546 0.89082 0.91405 1.86099 1.24376 1.51507 1.69265 1.22059 1.06028 0.97189 0.93540 1.21656 1.08729 0.88134 0.96245 1.43505 1.51281 1.11551 1.05974 1.22070 1.03194 1.01828 0.80263 0.91599 0.92057 0.93622 0.87497 0.91827 0.76389 0.91202 0.90296 0.93661 0.92033 0.92585 0.92312 0.96188 0.91621 0.91683 0.91937 0.90901 0.83630 0.81715 0.90827 0.89655 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.06 -0.70 5.31 -27.89 -0.15 -0.85 16 3 C 0.10 1.30 6.14 -81.89 -0.50 0.79 16 4 C -0.23 -3.29 6.29 -103.35 -0.65 -3.94 16 5 C 0.59 10.00 7.81 -12.59 -0.10 9.90 16 6 O -0.56 -10.80 14.81 5.26 0.08 -10.72 16 7 N -0.71 -11.70 5.49 -61.44 -0.34 -12.04 16 8 C 0.13 2.42 5.34 -4.05 -0.02 2.39 16 9 C 0.07 1.39 2.68 -25.78 -0.07 1.32 16 10 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 11 C 0.12 2.60 3.93 -3.83 -0.02 2.59 16 12 N -0.60 -14.08 1.75 -172.02 -0.30 -14.38 16 13 C -0.28 -7.68 9.69 -15.06 -0.15 -7.83 16 14 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 15 C 0.04 1.21 5.21 -17.43 -0.09 1.12 16 16 N -0.89 -26.80 13.97 55.49 0.78 -26.02 16 17 Si 0.87 22.18 25.26 -169.99 -4.29 17.89 16 18 H -0.28 -7.00 6.70 56.52 0.38 -6.62 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.14 2.83 6.30 -3.19 -0.02 2.81 16 22 C -0.17 -2.70 5.78 -27.18 -0.16 -2.86 16 23 C 0.09 1.41 6.37 36.41 0.23 1.64 16 24 O -0.39 -7.05 9.38 -26.54 -0.25 -7.30 16 25 C -0.16 -1.95 10.56 -37.49 -0.40 -2.34 16 26 C -0.02 -0.21 11.34 -16.82 -0.19 -0.40 16 27 N -0.45 -4.33 3.09 -119.88 -0.37 -4.70 16 28 C 0.07 0.36 10.61 59.85 0.63 1.00 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.11 1.43 6.46 -51.93 -0.34 1.10 16 33 H 0.06 0.53 7.58 -51.93 -0.39 0.14 16 34 H 0.40 5.92 7.58 -40.82 -0.31 5.61 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.06 1.48 3.65 -51.93 -0.19 1.29 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.06 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 43 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 44 H 0.06 1.15 7.40 -51.92 -0.38 0.77 16 45 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.15 1.51 7.69 -52.49 -0.40 1.10 16 47 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 50 H 0.08 0.39 7.47 -51.93 -0.39 0.00 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -33.35 393.74 -8.34 -41.69 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.30 Total: 5.41 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.27 Total: 4.24 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.23 Total: -57.14 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.17 Total: -18.02 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.29 Total: 17.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.35 -8.34 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073766252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.729 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds