Wall clock time and date at job start Tue Mar 31 2020 19:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47077 * 2 1 4 4 C 1.36770 * 125.80068 * 270.00368 * 3 2 1 5 5 C 1.47262 * 126.94209 * 359.94232 * 4 3 2 6 6 O 1.21618 * 120.00207 * 0.02562 * 5 4 3 7 7 N 1.34787 * 119.99788 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99728 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47100 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.46926 * 305.00274 * 9 8 7 11 11 C 1.54803 * 109.47126 * 185.00698 * 9 8 7 12 12 N 1.45123 * 109.54132 * 172.10868 * 11 9 8 13 13 C 1.36939 * 118.75813 * 269.29122 * 12 11 9 14 14 H 1.08003 * 119.99493 * 139.40556 * 13 12 11 15 15 C 1.38807 * 120.00013 * 319.40235 * 13 12 11 16 16 N 1.31618 * 119.99772 * 156.47177 * 15 13 12 17 17 Si 1.86792 * 120.00094 * 336.47872 * 15 13 12 18 18 H 1.48503 * 109.47660 * 95.52307 * 17 15 13 19 19 H 1.48503 * 109.47052 * 215.52465 * 17 15 13 20 20 H 1.48495 * 109.47132 * 335.51843 * 17 15 13 21 21 C 1.47511 * 122.48278 * 89.28894 * 12 11 9 22 22 C 1.53576 * 111.02679 * 318.37658 * 21 12 11 23 23 C 1.51529 * 109.58074 * 320.02175 * 22 21 12 24 24 O 1.38015 * 109.46822 * 64.99869 * 9 8 7 25 25 C 1.46694 * 106.11734 * 179.97438 * 4 3 2 26 26 C 1.34492 * 106.32737 * 359.77674 * 25 4 3 27 27 N 1.34659 * 125.80296 * 89.97662 * 3 2 1 28 28 C 1.46502 * 124.84802 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47438 * 60.00432 * 1 2 3 30 30 H 1.09006 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47294 * 299.99349 * 1 2 3 32 32 H 1.09006 * 109.46993 * 240.00293 * 2 1 3 33 33 H 1.08998 * 109.47216 * 120.00071 * 2 1 3 34 34 H 0.96992 * 119.99714 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47424 * 299.99439 * 8 7 5 36 36 H 1.09001 * 109.47434 * 59.99820 * 8 7 5 37 37 H 1.09004 * 109.46275 * 292.13487 * 11 9 8 38 38 H 1.08997 * 109.46151 * 52.09056 * 11 9 8 39 39 H 0.96998 * 120.00372 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.16541 * 197.97796 * 21 12 11 41 41 H 1.08998 * 109.12412 * 78.74693 * 21 12 11 42 42 H 1.09007 * 109.45008 * 199.98784 * 22 21 12 43 43 H 1.08996 * 109.45121 * 80.05654 * 22 21 12 44 44 H 1.09008 * 109.59319 * 331.61453 * 23 22 21 45 45 H 1.09008 * 109.59178 * 211.18550 * 23 22 21 46 46 H 1.07994 * 126.83373 * 179.97438 * 25 4 3 47 47 H 1.07999 * 125.56606 * 180.21157 * 26 25 4 48 48 H 1.08998 * 109.46579 * 90.00412 * 28 27 3 49 49 H 1.09005 * 109.46793 * 209.99793 * 28 27 3 50 50 H 1.08994 * 109.47153 * 330.00039 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2989 2.1751 -1.1093 5 6 2.1543 1.7629 -2.5156 6 8 1.7595 0.6443 -2.7839 7 7 2.4595 2.6253 -3.5055 8 6 2.3152 2.2154 -4.9045 9 6 2.7235 3.3716 -5.8194 10 1 2.1440 4.2588 -5.5644 11 6 2.4520 2.9840 -7.2933 12 7 2.6612 4.1398 -8.1457 13 6 1.5995 4.9624 -8.4126 14 1 1.7371 6.0335 -8.4288 15 6 0.3466 4.4197 -8.6622 16 7 -0.7352 5.1425 -8.4630 17 14 0.1957 2.6636 -9.2806 18 1 -0.0422 1.7528 -8.1320 19 1 -0.9416 2.5694 -10.2309 20 1 1.4510 2.2723 -9.9708 21 6 3.9744 4.4618 -8.7354 22 6 5.1037 4.2446 -7.7175 23 6 4.6564 4.7260 -6.3522 24 8 4.0678 3.6368 -5.6535 25 6 2.7587 3.4775 -0.6152 26 6 2.7275 3.4051 0.7274 27 7 2.2945 2.1636 1.0921 28 6 2.1316 1.7064 2.4744 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 2.7740 3.5175 -3.2914 35 1 2.9549 1.3545 -5.0988 36 1 1.2767 1.9476 -5.0994 37 1 3.1324 2.1858 -7.5902 38 1 1.4227 2.6398 -7.3946 39 1 -1.6108 4.7634 -8.6378 40 1 3.9769 5.5037 -9.0558 41 1 4.1442 3.8210 -9.6005 42 1 5.9857 4.8044 -8.0289 43 1 5.3471 3.1834 -7.6665 44 1 3.9236 5.5246 -6.4682 45 1 5.5172 5.0953 -5.7947 46 1 3.0591 4.3267 -1.2110 47 1 3.0028 4.1989 1.4059 48 1 3.0601 1.2502 2.8178 49 1 1.8869 2.5562 3.1117 50 1 1.3269 0.9728 2.5220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073766252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:16 Heat of formation + Delta-G solvation = -32.624513 kcal Electronic energy + Delta-G solvation = -29912.727037 eV Core-core repulsion = 25940.691692 eV Total energy + Delta-G solvation = -3972.035345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32022 -40.81521 -39.83752 -37.03809 -35.99156 -34.59480 -34.18322 -33.74675 -33.16077 -30.50257 -29.23646 -28.01001 -27.38208 -26.59974 -24.73677 -24.13731 -22.94354 -22.57138 -21.31570 -20.99737 -19.97163 -18.90567 -18.42181 -17.84640 -17.53411 -17.05069 -16.80941 -16.44998 -16.25518 -15.88479 -15.71812 -15.46386 -15.21209 -15.01265 -14.92022 -14.34858 -14.32337 -14.13840 -14.06561 -13.82724 -13.76587 -13.51820 -13.29552 -13.16899 -13.09823 -12.87110 -12.72705 -12.42605 -12.30617 -12.26765 -12.06038 -11.87536 -11.79113 -11.59098 -11.32078 -10.86530 -10.70781 -10.35124 -10.10003 -9.48183 -9.09985 -8.75435 -8.26234 -5.65850 0.76595 1.27540 1.36641 1.47296 1.53961 1.90213 2.36957 2.43412 2.59416 2.73607 2.99216 3.30517 3.72521 3.93656 3.99652 4.02921 4.07076 4.13118 4.14645 4.25180 4.36651 4.38266 4.44279 4.46814 4.48110 4.52881 4.58618 4.65328 4.69236 4.72216 4.72863 4.76059 4.90619 4.97931 5.02818 5.04778 5.07892 5.19219 5.23018 5.29284 5.31982 5.35688 5.49980 5.81563 5.91464 6.12394 6.13241 6.39478 6.70293 6.71428 6.97652 7.37085 7.58705 7.98283 8.92684 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003003 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.603436 B = 9323.037988 C =10245.291037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C 0.100 3.900 4 C -0.269 4.269 5 C 0.581 3.419 6 O -0.591 6.591 7 N -0.710 5.710 8 C 0.142 3.858 9 C 0.094 3.906 10 H 0.038 0.962 11 C 0.114 3.886 12 N -0.614 5.614 13 C -0.266 4.266 14 H 0.045 0.955 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.928 3.072 18 H -0.276 1.276 19 H -0.303 1.303 20 H -0.262 1.262 21 C 0.137 3.863 22 C -0.155 4.155 23 C 0.082 3.918 24 O -0.390 6.390 25 C -0.187 4.187 26 C -0.006 4.006 27 N -0.440 5.440 28 C 0.058 3.942 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.055 0.945 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.112 0.888 46 H 0.152 0.848 47 H 0.204 0.796 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -5.759 23.493 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.018 4.018 4 C -0.279 4.279 5 C 0.372 3.628 6 O -0.474 6.474 7 N -0.361 5.361 8 C 0.017 3.983 9 C 0.032 3.968 10 H 0.056 0.944 11 C -0.013 4.013 12 N -0.337 5.337 13 C -0.396 4.396 14 H 0.063 0.937 15 C -0.205 4.205 16 N -0.581 5.581 17 Si 0.756 3.244 18 H -0.203 1.203 19 H -0.232 1.232 20 H -0.187 1.187 21 C 0.013 3.987 22 C -0.194 4.194 23 C 0.006 3.994 24 O -0.309 6.309 25 C -0.210 4.210 26 C -0.133 4.133 27 N -0.115 5.115 28 C -0.082 4.082 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.130 0.870 46 H 0.170 0.830 47 H 0.221 0.779 48 H 0.108 0.892 49 H 0.128 0.872 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.364 -6.695 23.709 26.728 hybrid contribution -0.806 0.146 -1.226 1.474 sum 9.558 -6.549 22.484 25.294 Atomic orbital electron populations 1.21598 0.93873 1.02567 1.01180 1.20272 0.96738 0.88860 1.04043 1.20439 1.00685 0.95044 0.85673 1.20173 1.18595 0.98142 0.91018 1.17844 0.75893 0.83785 0.85263 1.90674 1.49599 1.21907 1.85180 1.45609 1.67836 1.17565 1.05054 1.21132 1.00374 0.96628 0.80122 1.22068 0.83356 0.96145 0.95220 0.94422 1.21874 0.99074 0.90077 0.90296 1.44146 1.06870 1.28922 1.53810 1.18681 0.87717 0.89434 1.43745 0.93716 1.26039 0.95432 1.00793 0.98276 1.69987 0.98131 1.39787 1.50183 0.86081 0.77159 0.82568 0.78547 1.20341 1.23154 1.18662 1.21440 0.83877 0.99054 0.94284 1.22468 0.98651 1.02599 0.95677 1.22217 0.96977 0.87820 0.92377 1.86120 1.23143 1.52125 1.69517 1.22246 1.07320 0.96595 0.94888 1.22231 1.06386 0.88676 0.95981 1.43814 1.49583 1.11132 1.07004 1.22454 1.04525 1.03315 0.77894 0.95112 0.90716 0.91665 0.90444 0.88610 0.75495 0.91091 0.92039 0.92115 0.94281 0.92725 0.92613 0.95832 0.87832 0.91428 0.94386 0.87031 0.82991 0.77905 0.89191 0.87201 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.89 71.98 0.71 -2.02 16 2 C -0.06 -1.30 5.31 29.85 0.16 -1.14 16 3 C 0.10 2.38 6.14 41.78 0.26 2.64 16 4 C -0.27 -7.79 6.29 -19.04 -0.12 -7.91 16 5 C 0.58 20.54 7.81 86.61 0.68 21.22 16 6 O -0.59 -24.06 14.81 -4.09 -0.06 -24.12 16 7 N -0.71 -24.01 5.49 -466.53 -2.56 -26.57 16 8 C 0.14 5.29 5.34 86.38 0.46 5.76 16 9 C 0.09 3.66 2.68 31.21 0.08 3.75 16 10 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 11 C 0.11 4.99 3.93 87.25 0.34 5.33 16 12 N -0.61 -28.69 1.75 -698.14 -1.22 -29.91 16 13 C -0.27 -14.90 9.69 84.03 0.81 -14.08 16 14 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 15 C -0.01 -0.44 5.21 84.86 0.44 0.00 16 16 N -0.94 -58.37 13.97 21.65 0.30 -58.07 16 17 Si 0.93 46.96 25.26 68.60 1.73 48.69 16 18 H -0.28 -13.61 6.70 99.48 0.67 -12.94 16 19 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 20 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 21 C 0.14 5.22 6.30 86.38 0.54 5.77 16 22 C -0.16 -4.56 5.78 30.31 0.18 -4.38 16 23 C 0.08 2.51 6.37 71.50 0.46 2.97 16 24 O -0.39 -13.51 9.38 -117.87 -1.11 -14.62 16 25 C -0.19 -4.23 10.56 23.62 0.25 -3.98 16 26 C -0.01 -0.10 11.34 83.12 0.94 0.84 16 27 N -0.44 -7.25 3.09 -533.20 -1.65 -8.89 16 28 C 0.06 0.38 10.61 127.77 1.36 1.73 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.08 2.14 6.46 -2.38 -0.02 2.13 16 33 H 0.10 1.37 7.58 -2.39 -0.02 1.35 16 34 H 0.41 12.33 7.58 -92.71 -0.70 11.63 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.47 8.11 -2.38 -0.02 2.45 16 38 H 0.04 1.90 3.65 -2.39 -0.01 1.89 16 39 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 40 H 0.06 2.13 7.91 -2.39 -0.02 2.11 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 44 H 0.04 1.37 7.40 -2.38 -0.02 1.35 16 45 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 46 H 0.15 3.04 7.69 -2.91 -0.02 3.02 16 47 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.11 0.23 8.13 -2.38 -0.02 0.21 16 50 H 0.09 0.48 7.47 -2.39 -0.02 0.46 16 Total: -1.00 -76.25 393.74 3.18 -73.07 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.19 Total: 23.93 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 7.55 Total: 16.47 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.12 Total: -123.43 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.17 Total: -38.73 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.73 Total: 48.69 kcal Total: -76.25 3.18 -73.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073766252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.446 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds