Wall clock time and date at job start Tue Mar 31 2020 19:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33695 * 126.27154 * 2 1 4 4 C 1.30616 * 108.99727 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.42522 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46591 * 89.99890 * 5 4 3 7 7 C 1.53000 * 109.47433 * 65.00421 * 6 5 4 8 8 C 1.53005 * 109.46751 * 185.00059 * 6 5 4 9 9 O 1.33664 * 109.15625 * 359.97438 * 4 3 2 10 10 C 1.35352 * 107.68231 * 0.02562 * 9 4 3 11 11 C 1.46725 * 126.64410 * 179.97438 * 10 9 4 12 12 O 1.21684 * 119.99611 * 180.02562 * 11 10 9 13 13 N 1.34770 * 119.99819 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.99857 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47242 * 179.97438 * 14 13 11 16 16 H 1.09007 * 112.84479 * 43.80342 * 15 14 13 17 17 C 1.53780 * 113.61649 * 174.99782 * 15 14 13 18 18 C 1.53782 * 87.07765 * 139.98287 * 17 15 14 19 19 H 1.09007 * 113.60903 * 220.02052 * 18 17 15 20 20 N 1.46500 * 113.61216 * 89.12152 * 18 17 15 21 21 C 1.36939 * 120.00002 * 154.99495 * 20 18 17 22 22 H 1.08004 * 119.99481 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00012 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99774 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 60.00109 * 25 23 21 27 27 H 1.48496 * 109.46755 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46902 * 299.99729 * 25 23 21 29 29 C 1.53775 * 87.08414 * 334.57045 * 18 17 15 30 30 H 1.08999 * 109.46999 * 89.97937 * 1 2 3 31 31 H 1.09009 * 109.46840 * 209.97866 * 1 2 3 32 32 H 1.08997 * 109.47697 * 329.97370 * 1 2 3 33 33 H 1.08997 * 109.47394 * 209.99438 * 5 4 3 34 34 H 1.08993 * 109.46550 * 329.99989 * 5 4 3 35 35 H 1.08999 * 109.47158 * 304.99706 * 6 5 4 36 36 H 1.08993 * 109.47149 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.46656 * 299.99818 * 7 6 5 38 38 H 1.09004 * 109.47188 * 59.99190 * 7 6 5 39 39 H 1.09005 * 109.47217 * 59.99920 * 8 6 5 40 40 H 1.08993 * 109.46931 * 179.97438 * 8 6 5 41 41 H 1.09004 * 109.46909 * 300.00220 * 8 6 5 42 42 H 0.97001 * 120.00274 * 0.02562 * 13 11 10 43 43 H 1.08999 * 109.47045 * 299.99728 * 14 13 11 44 44 H 1.08998 * 109.47071 * 60.00483 * 14 13 11 45 45 H 1.08992 * 113.61872 * 254.53517 * 17 15 14 46 46 H 1.09003 * 113.61034 * 25.43813 * 17 15 14 47 47 H 0.96997 * 119.99707 * 334.99567 * 20 18 17 48 48 H 0.96997 * 119.99735 * 179.97438 * 24 23 21 49 49 H 1.09002 * 113.61718 * 270.88330 * 29 18 17 50 50 H 1.09003 * 113.61659 * 139.98279 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 0.0006 5 6 4.7440 1.6033 0.0002 6 6 5.1492 1.9133 1.4427 7 6 5.6194 0.6286 2.1277 8 6 6.2860 2.9374 1.4441 9 8 3.5890 -0.6459 0.0015 10 6 2.3137 -1.0991 0.0009 11 6 1.8827 -2.5017 0.0011 12 8 0.6967 -2.7737 0.0000 13 7 2.8005 -3.4886 0.0023 14 6 2.3702 -4.8890 0.0030 15 6 3.5993 -5.8002 0.0038 16 1 4.3709 -5.4695 0.6991 17 6 3.2583 -7.2946 0.1274 18 6 4.3699 -7.5529 -0.9034 19 1 4.1162 -8.3189 -1.6363 20 7 5.6914 -7.7530 -0.3036 21 6 6.6454 -8.4720 -0.9729 22 1 6.4236 -8.8913 -1.9432 23 6 7.8978 -8.6612 -0.4048 24 7 8.1684 -8.1489 0.7770 25 14 9.1993 -9.6415 -1.3183 26 1 9.4905 -8.9863 -2.6187 27 1 10.4397 -9.6967 -0.5037 28 1 8.7026 -11.0201 -1.5587 29 6 4.1311 -6.1185 -1.4036 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8897 0.5142 33 1 5.5725 1.1152 -0.5130 34 1 4.4937 2.5310 -0.5143 35 1 4.2932 2.3199 1.9811 36 1 5.9085 0.8495 3.1551 37 1 4.8095 -0.1010 2.1267 38 1 6.4754 0.2219 1.5891 39 1 5.9511 3.8527 0.9560 40 1 6.5744 3.1586 2.4716 41 1 7.1420 2.5307 0.9055 42 1 3.7460 -3.2717 0.0035 43 1 1.7718 -5.0848 0.8928 44 1 1.7730 -5.0860 -0.8872 45 1 3.4705 -7.7110 1.1121 46 1 2.2610 -7.5461 -0.2337 47 1 5.8906 -7.3761 0.5677 48 1 9.0434 -8.2813 1.1741 49 1 3.3725 -6.0485 -2.1831 50 1 5.0481 -5.5854 -1.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086500234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:26 Heat of formation + Delta-G solvation = -6.725562 kcal Electronic energy + Delta-G solvation = -28572.160434 eV Core-core repulsion = 24601.248152 eV Total energy + Delta-G solvation = -3970.912282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.70575 -39.79367 -38.52934 -36.96994 -35.70805 -34.67014 -33.24748 -32.12792 -30.28040 -28.91275 -28.36036 -27.54221 -26.54219 -25.10069 -23.80065 -22.71064 -22.16731 -21.55996 -20.77073 -20.49725 -18.74612 -18.02983 -17.28574 -17.24062 -16.42329 -16.18289 -15.36641 -15.18772 -14.96803 -14.85168 -14.46329 -14.37927 -14.11682 -13.74332 -13.50540 -13.38801 -13.28388 -12.94742 -12.90960 -12.71051 -12.42487 -12.36134 -12.33706 -11.96623 -11.74104 -11.45725 -11.40075 -11.17191 -11.12111 -11.08730 -11.06631 -10.86017 -10.55539 -10.38780 -10.22674 -9.92352 -9.72502 -9.55156 -9.28257 -8.93444 -8.89304 -7.03890 -5.83900 -3.13114 0.58740 2.12515 2.14726 2.92367 3.02862 3.40096 3.44697 3.45517 3.56011 4.32221 4.37510 4.42568 4.52774 4.55210 4.66944 4.96194 4.98561 5.01216 5.07598 5.15454 5.20386 5.27543 5.29586 5.31917 5.41648 5.44690 5.48813 5.52003 5.55878 5.63580 5.64316 5.65359 5.75374 5.79895 5.86359 5.89396 5.94218 6.02877 6.08316 6.16584 6.26178 6.33169 6.53701 6.70465 6.84275 6.99922 7.18886 7.42338 7.65436 7.90574 8.35269 9.45892 10.03104 10.37313 11.38463 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.002491 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.160400 B =11239.269194 C =13431.143853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.489 5.489 4 C 0.228 3.772 5 C -0.026 4.026 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.146 4.146 9 O -0.184 6.184 10 C -0.119 4.119 11 C 0.606 3.394 12 O -0.520 6.520 13 N -0.710 5.710 14 C 0.130 3.870 15 C -0.121 4.121 16 H 0.094 0.906 17 C -0.147 4.147 18 C 0.168 3.832 19 H 0.063 0.937 20 N -0.706 5.706 21 C -0.244 4.244 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C -0.169 4.169 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.407 0.593 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.385 0.615 48 H 0.257 0.743 49 H 0.068 0.932 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 21.336 0.466 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.219 5.219 4 C 0.022 3.978 5 C -0.064 4.064 6 C -0.112 4.112 7 C -0.212 4.212 8 C -0.203 4.203 9 O -0.071 6.071 10 C -0.174 4.174 11 C 0.392 3.608 12 O -0.398 6.398 13 N -0.360 5.360 14 C 0.008 3.992 15 C -0.139 4.139 16 H 0.112 0.888 17 C -0.187 4.187 18 C 0.055 3.945 19 H 0.081 0.919 20 N -0.344 5.344 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.210 4.210 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.242 0.758 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.075 21.553 0.364 24.235 hybrid contribution 1.576 -0.878 -0.174 1.813 sum -9.498 20.675 0.190 22.753 Atomic orbital electron populations 1.20383 0.85310 1.04318 1.03699 1.22062 0.98321 0.86416 0.97652 1.70345 1.00354 1.31062 1.20094 1.26483 0.95530 0.79350 0.96431 1.20428 0.90283 0.96150 0.99537 1.21160 0.99390 0.97053 0.93635 1.21941 1.01725 0.96575 1.00933 1.21819 0.97731 0.98247 1.02553 1.84484 1.29603 1.23716 1.69282 1.22950 0.81378 0.96348 1.16764 1.16321 0.85839 0.81336 0.77344 1.90846 1.15725 1.81944 1.51321 1.45998 1.09965 1.06665 1.73343 1.21608 0.97409 0.78054 1.02174 1.22731 0.96227 0.94993 0.99998 0.88820 1.23446 0.99817 0.93854 1.01538 1.21048 0.86118 0.93562 0.93732 0.91895 1.42162 1.08056 1.62818 1.21364 1.19247 0.91982 1.25537 1.00694 0.91035 1.24763 0.97877 1.01198 0.96984 1.69647 1.22380 1.49560 1.16488 0.86244 0.81165 0.79929 0.78709 1.21214 1.21665 1.21162 1.23907 1.00347 1.02372 0.94405 0.90027 0.88620 0.90539 0.88260 0.87193 0.90286 0.92022 0.92803 0.91843 0.92237 0.91954 0.92079 0.75787 0.91301 0.91055 0.91238 0.90363 0.78114 0.93368 0.91340 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.87 36.00 0.36 -0.48 16 2 C 0.08 1.01 7.16 -82.47 -0.59 0.42 16 3 N -0.49 -6.00 11.26 -7.07 -0.08 -6.08 16 4 C 0.23 2.45 6.74 -12.79 -0.09 2.36 16 5 C -0.03 -0.18 5.32 -27.88 -0.15 -0.33 16 6 C -0.09 -0.62 2.91 -90.61 -0.26 -0.88 16 7 C -0.15 -1.20 9.01 37.16 0.33 -0.87 16 8 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 9 O -0.18 -2.22 9.97 4.40 0.04 -2.18 16 10 C -0.12 -1.57 7.18 -36.84 -0.26 -1.83 16 11 C 0.61 8.43 7.79 -12.84 -0.10 8.33 16 12 O -0.52 -8.14 14.79 5.20 0.08 -8.07 16 13 N -0.71 -9.10 5.55 -61.60 -0.34 -9.45 16 14 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 15 C -0.12 -1.76 3.63 -89.81 -0.33 -2.09 16 16 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 17 C -0.15 -2.28 7.39 -25.92 -0.19 -2.47 16 18 C 0.17 3.20 4.56 -67.12 -0.31 2.89 16 19 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 20 N -0.71 -17.12 5.31 -52.63 -0.28 -17.40 16 21 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 25 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 C -0.17 -2.76 7.43 -25.92 -0.19 -2.96 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.07 6.47 -51.92 -0.34 0.73 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.51 6.90 -51.93 -0.36 0.15 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.41 4.89 8.27 -40.82 -0.34 4.55 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 47 H 0.38 9.88 7.90 -40.82 -0.32 9.55 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 411.57 15.07 6.20 6.20 Total: -1.00 -31.45 411.57 -8.86 -40.31 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.48 Total: 10.35 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.71 Total: -3.82 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.02 Total: -59.76 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.12 Total: -10.25 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.45 -8.86 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086500234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.588 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds