Wall clock time and date at job start Tue Mar 31 2020 19:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33695 * 126.27154 * 2 1 4 4 C 1.30616 * 108.99727 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.42522 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46591 * 89.99890 * 5 4 3 7 7 C 1.53000 * 109.47433 * 65.00421 * 6 5 4 8 8 C 1.53005 * 109.46751 * 185.00059 * 6 5 4 9 9 O 1.33664 * 109.15625 * 359.97438 * 4 3 2 10 10 C 1.35352 * 107.68231 * 0.02562 * 9 4 3 11 11 C 1.46725 * 126.64410 * 179.97438 * 10 9 4 12 12 O 1.21684 * 119.99611 * 180.02562 * 11 10 9 13 13 N 1.34770 * 119.99819 * 0.02562 * 11 10 9 14 14 C 1.46504 * 119.99857 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47242 * 179.97438 * 14 13 11 16 16 H 1.09007 * 112.84479 * 43.80342 * 15 14 13 17 17 C 1.53780 * 113.61649 * 174.99782 * 15 14 13 18 18 C 1.53782 * 87.07765 * 139.98287 * 17 15 14 19 19 H 1.09007 * 113.60903 * 220.02052 * 18 17 15 20 20 N 1.46500 * 113.61216 * 89.12152 * 18 17 15 21 21 C 1.36939 * 120.00002 * 154.99495 * 20 18 17 22 22 H 1.08004 * 119.99481 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00012 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99774 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47139 * 60.00109 * 25 23 21 27 27 H 1.48496 * 109.46755 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46902 * 299.99729 * 25 23 21 29 29 C 1.53775 * 87.08414 * 334.57045 * 18 17 15 30 30 H 1.08999 * 109.46999 * 89.97937 * 1 2 3 31 31 H 1.09009 * 109.46840 * 209.97866 * 1 2 3 32 32 H 1.08997 * 109.47697 * 329.97370 * 1 2 3 33 33 H 1.08997 * 109.47394 * 209.99438 * 5 4 3 34 34 H 1.08993 * 109.46550 * 329.99989 * 5 4 3 35 35 H 1.08999 * 109.47158 * 304.99706 * 6 5 4 36 36 H 1.08993 * 109.47149 * 179.97438 * 7 6 5 37 37 H 1.09003 * 109.46656 * 299.99818 * 7 6 5 38 38 H 1.09004 * 109.47188 * 59.99190 * 7 6 5 39 39 H 1.09005 * 109.47217 * 59.99920 * 8 6 5 40 40 H 1.08993 * 109.46931 * 179.97438 * 8 6 5 41 41 H 1.09004 * 109.46909 * 300.00220 * 8 6 5 42 42 H 0.97001 * 120.00274 * 0.02562 * 13 11 10 43 43 H 1.08999 * 109.47045 * 299.99728 * 14 13 11 44 44 H 1.08998 * 109.47071 * 60.00483 * 14 13 11 45 45 H 1.08992 * 113.61872 * 254.53517 * 17 15 14 46 46 H 1.09003 * 113.61034 * 25.43813 * 17 15 14 47 47 H 0.96997 * 119.99707 * 334.99567 * 20 18 17 48 48 H 0.96997 * 119.99735 * 179.97438 * 24 23 21 49 49 H 1.09002 * 113.61718 * 270.88330 * 29 18 17 50 50 H 1.09003 * 113.61659 * 139.98279 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6900 0.0006 5 6 4.7440 1.6033 0.0002 6 6 5.1492 1.9133 1.4427 7 6 5.6194 0.6286 2.1277 8 6 6.2860 2.9374 1.4441 9 8 3.5890 -0.6459 0.0015 10 6 2.3137 -1.0991 0.0009 11 6 1.8827 -2.5017 0.0011 12 8 0.6967 -2.7737 0.0000 13 7 2.8005 -3.4886 0.0023 14 6 2.3702 -4.8890 0.0030 15 6 3.5993 -5.8002 0.0038 16 1 4.3709 -5.4695 0.6991 17 6 3.2583 -7.2946 0.1274 18 6 4.3699 -7.5529 -0.9034 19 1 4.1162 -8.3189 -1.6363 20 7 5.6914 -7.7530 -0.3036 21 6 6.6454 -8.4720 -0.9729 22 1 6.4236 -8.8913 -1.9432 23 6 7.8978 -8.6612 -0.4048 24 7 8.1684 -8.1489 0.7770 25 14 9.1993 -9.6415 -1.3183 26 1 9.4905 -8.9863 -2.6187 27 1 10.4397 -9.6967 -0.5037 28 1 8.7026 -11.0201 -1.5587 29 6 4.1311 -6.1185 -1.4036 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3634 0.8897 0.5142 33 1 5.5725 1.1152 -0.5130 34 1 4.4937 2.5310 -0.5143 35 1 4.2932 2.3199 1.9811 36 1 5.9085 0.8495 3.1551 37 1 4.8095 -0.1010 2.1267 38 1 6.4754 0.2219 1.5891 39 1 5.9511 3.8527 0.9560 40 1 6.5744 3.1586 2.4716 41 1 7.1420 2.5307 0.9055 42 1 3.7460 -3.2717 0.0035 43 1 1.7718 -5.0848 0.8928 44 1 1.7730 -5.0860 -0.8872 45 1 3.4705 -7.7110 1.1121 46 1 2.2610 -7.5461 -0.2337 47 1 5.8906 -7.3761 0.5677 48 1 9.0434 -8.2813 1.1741 49 1 3.3725 -6.0485 -2.1831 50 1 5.0481 -5.5854 -1.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086500234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:26 Heat of formation + Delta-G solvation = -28.060572 kcal Electronic energy + Delta-G solvation = -28573.085589 eV Core-core repulsion = 24601.248152 eV Total energy + Delta-G solvation = -3971.837437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.60885 -40.93029 -39.86593 -37.54542 -36.67487 -35.95266 -34.98643 -32.98915 -32.09518 -29.76844 -29.37768 -28.08353 -27.62205 -26.44803 -25.67729 -23.73570 -23.19958 -22.66780 -21.75976 -21.09750 -20.04952 -19.41151 -19.02680 -18.15673 -17.35765 -17.16615 -16.71240 -16.40436 -16.00984 -15.83345 -15.65859 -15.53930 -15.11135 -14.97647 -14.70730 -14.58546 -14.29978 -14.20879 -13.78420 -13.65061 -13.30407 -13.22920 -13.14530 -12.94435 -12.93057 -12.86082 -12.63877 -12.43889 -12.20868 -12.09466 -12.07249 -11.95504 -11.85188 -11.66615 -11.62710 -11.50063 -11.26474 -10.95087 -10.80469 -10.35524 -9.85761 -9.00683 -7.95835 -5.24141 -0.35821 1.22316 1.25245 1.47577 1.49964 1.56056 1.88757 2.03181 2.55418 2.75838 3.36577 3.53151 3.56864 3.70538 3.75295 3.79599 3.84838 3.90612 4.03880 4.12451 4.29942 4.31649 4.33280 4.38382 4.51626 4.63003 4.65207 4.68381 4.69893 4.71651 4.78445 4.84042 4.88484 4.92248 4.96175 4.97948 5.05221 5.07257 5.15259 5.20510 5.26004 5.33008 5.36036 5.42454 5.43661 5.52115 5.64805 6.18111 6.27788 6.47844 6.85332 7.32786 8.10055 8.32140 9.27275 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.002491 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.160400 B =11239.269194 C =13431.143853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.076 3.924 3 N -0.507 5.507 4 C 0.237 3.763 5 C -0.027 4.027 6 C -0.087 4.087 7 C -0.155 4.155 8 C -0.142 4.142 9 O -0.190 6.190 10 C -0.143 4.143 11 C 0.608 3.392 12 O -0.541 6.541 13 N -0.707 5.707 14 C 0.139 3.861 15 C -0.104 4.104 16 H 0.079 0.921 17 C -0.131 4.131 18 C 0.144 3.856 19 H 0.061 0.939 20 N -0.720 5.720 21 C -0.244 4.244 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.278 1.278 27 H -0.296 1.296 28 H -0.278 1.278 29 C -0.155 4.155 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.410 0.590 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.093 0.907 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 22.421 -0.553 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 N -0.237 5.237 4 C 0.031 3.969 5 C -0.065 4.065 6 C -0.106 4.106 7 C -0.213 4.213 8 C -0.199 4.199 9 O -0.077 6.077 10 C -0.198 4.198 11 C 0.394 3.606 12 O -0.421 6.421 13 N -0.356 5.356 14 C 0.017 3.983 15 C -0.123 4.123 16 H 0.097 0.903 17 C -0.171 4.171 18 C 0.034 3.966 19 H 0.080 0.920 20 N -0.358 5.358 21 C -0.375 4.375 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.801 3.199 26 H -0.204 1.204 27 H -0.223 1.223 28 H -0.204 1.204 29 C -0.196 4.196 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.246 0.754 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.206 0.794 48 H 0.060 0.940 49 H 0.112 0.888 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.607 22.642 -0.690 25.453 hybrid contribution 1.683 -1.154 0.124 2.044 sum -9.924 21.488 -0.565 23.676 Atomic orbital electron populations 1.20420 0.84107 1.04564 1.04337 1.22465 0.99312 0.86450 0.96591 1.70389 1.00947 1.31016 1.21303 1.27340 0.96272 0.79186 0.94073 1.20734 0.89332 0.96271 1.00155 1.21109 0.99729 0.96785 0.93013 1.21954 1.01012 0.96748 1.01537 1.21793 0.97097 0.98081 1.02962 1.84484 1.29232 1.24436 1.69586 1.22825 0.81942 0.96192 1.18802 1.16367 0.85587 0.81722 0.76913 1.90825 1.16439 1.82398 1.52471 1.45950 1.10085 1.06527 1.73049 1.21489 0.96350 0.77710 1.02785 1.22507 0.96416 0.95014 0.98394 0.90290 1.23343 0.99843 0.93987 0.99899 1.21386 0.85054 0.95039 0.95157 0.92049 1.42300 1.09647 1.62813 1.21056 1.19638 0.92613 1.24570 1.00719 0.90571 1.25546 1.00079 1.03061 0.98013 1.69800 1.22487 1.51556 1.18111 0.85233 0.78340 0.78783 0.77540 1.20447 1.22252 1.20394 1.23742 1.00195 0.99595 0.96030 0.89094 0.89483 0.89086 0.86736 0.85276 0.91113 0.91625 0.94970 0.91576 0.91081 0.91800 0.91523 0.75399 0.90793 0.90311 0.92279 0.87229 0.79392 0.94008 0.88820 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.87 71.23 0.70 -0.85 16 2 C 0.08 1.89 7.16 41.83 0.30 2.19 16 3 N -0.51 -11.99 11.26 -291.06 -3.28 -15.27 16 4 C 0.24 4.86 6.74 88.29 0.59 5.46 16 5 C -0.03 -0.33 5.32 29.85 0.16 -0.17 16 6 C -0.09 -1.03 2.91 -10.79 -0.03 -1.06 16 7 C -0.16 -2.33 9.01 71.98 0.65 -1.68 16 8 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 9 O -0.19 -4.52 9.97 -7.18 -0.07 -4.59 16 10 C -0.14 -3.72 7.18 24.05 0.17 -3.55 16 11 C 0.61 16.60 7.79 86.46 0.67 17.28 16 12 O -0.54 -16.61 14.79 -4.30 -0.06 -16.68 16 13 N -0.71 -17.56 5.55 -467.04 -2.59 -20.15 16 14 C 0.14 3.39 5.51 86.38 0.48 3.86 16 15 C -0.10 -2.93 3.63 -10.27 -0.04 -2.97 16 16 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 17 C -0.13 -3.87 7.39 31.12 0.23 -3.64 16 18 C 0.14 5.37 4.56 45.52 0.21 5.58 16 19 H 0.06 2.30 8.10 -2.38 -0.02 2.28 16 20 N -0.72 -35.30 5.31 -320.44 -1.70 -37.01 16 21 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 23 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 24 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 25 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 C -0.16 -4.87 7.43 31.12 0.23 -4.64 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.92 6.47 -2.38 -0.02 1.90 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.03 0.61 6.90 -2.39 -0.02 0.60 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.41 9.70 8.27 -92.71 -0.77 8.93 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.86 7.84 -2.39 -0.02 1.84 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.11 2.58 8.10 -2.39 -0.02 2.56 16 47 H 0.37 19.67 7.90 -92.71 -0.73 18.94 16 48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.09 2.49 7.89 -2.39 -0.02 2.47 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.97 411.57 0.35 -67.63 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.55 Total: 37.57 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.29 Total: -0.87 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -7.29 Total: -130.55 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.14 Total: -21.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -67.97 0.35 -67.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086500234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds