Wall clock time and date at job start Tue Mar 31 2020 20:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46991 * 2 1 4 4 N 1.30012 * 127.33607 * 85.26526 * 3 2 1 5 5 O 1.20656 * 112.29874 * 179.97438 * 4 3 2 6 6 C 1.33496 * 113.16032 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.83051 * 180.02562 * 6 5 4 8 8 C 1.37359 * 106.33935 * 359.74410 * 6 5 4 9 9 C 1.47396 * 128.56956 * 180.26103 * 8 6 5 10 10 O 1.21608 * 119.99676 * 277.10423 * 9 8 6 11 11 N 1.34775 * 120.00335 * 97.09687 * 9 8 6 12 12 C 1.46950 * 120.35637 * 184.33580 * 11 9 8 13 13 C 1.52337 * 109.09005 * 68.37916 * 12 11 9 14 14 C 1.53805 * 109.16540 * 72.70433 * 13 12 11 15 15 C 1.52449 * 109.41719 * 282.13104 * 14 13 12 16 16 C 1.53965 * 110.73168 * 113.72933 * 15 14 13 17 17 C 1.52882 * 109.71603 * 315.64170 * 16 15 14 18 18 H 1.09008 * 109.47706 * 47.09354 * 17 16 15 19 19 N 1.46499 * 109.48039 * 167.11393 * 17 16 15 20 20 C 1.36938 * 120.00031 * 205.00164 * 19 17 16 21 21 H 1.07999 * 119.99657 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99769 * 179.97438 * 20 19 17 23 23 N 1.31606 * 120.00066 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99690 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46989 * 59.99992 * 24 22 20 26 26 H 1.48492 * 109.47199 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46871 * 300.00123 * 24 22 20 28 28 C 1.45345 * 120.35069 * 4.05918 * 11 9 8 29 29 H 1.09002 * 109.47135 * 60.00042 * 1 2 3 30 30 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47525 * 300.00324 * 1 2 3 32 32 H 1.08991 * 109.47112 * 239.99360 * 2 1 3 33 33 H 1.09006 * 109.46574 * 119.99231 * 2 1 3 34 34 H 1.09002 * 109.46846 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.47402 * 120.02393 * 7 6 5 36 36 H 1.09002 * 109.46572 * 240.02678 * 7 6 5 37 37 H 1.09004 * 109.53625 * 188.26297 * 12 11 9 38 38 H 1.08998 * 109.53494 * 308.49373 * 12 11 9 39 39 H 1.09002 * 109.52124 * 192.61040 * 13 12 11 40 40 H 1.09003 * 109.52205 * 312.79912 * 13 12 11 41 41 H 1.09003 * 109.47325 * 42.11167 * 14 13 12 42 42 H 1.08993 * 109.48073 * 162.13242 * 14 13 12 43 43 H 1.09004 * 109.22162 * 234.05204 * 15 14 13 44 44 H 1.09004 * 109.22754 * 353.40539 * 15 14 13 45 45 H 1.09000 * 109.43043 * 75.72053 * 16 15 14 46 46 H 1.09005 * 109.42885 * 195.57065 * 16 15 14 47 47 H 0.97000 * 120.00043 * 25.00555 * 19 17 16 48 48 H 0.97005 * 119.99882 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.67500 * 343.07338 * 28 11 9 50 50 H 1.08994 * 109.67288 * 103.61498 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2147 2.1927 1.0302 5 8 2.6279 3.2826 0.7183 6 6 2.7945 3.4237 -0.5987 7 6 3.2927 4.6495 -1.3200 8 6 2.4277 2.2273 -1.1651 9 6 2.4273 1.8464 -2.5890 10 8 1.4893 2.1523 -3.2999 11 7 3.4666 1.1593 -3.1031 12 6 3.5195 0.8580 -4.5404 13 6 3.7268 2.1540 -5.3137 14 6 5.1735 2.6360 -5.1130 15 6 5.3035 3.2926 -3.7433 16 6 6.2254 2.4662 -2.8280 17 6 5.8793 0.9823 -2.9517 18 1 5.7914 0.7161 -4.0051 19 7 6.9373 0.1806 -2.3319 20 6 7.1410 -1.1125 -2.7338 21 1 6.5220 -1.5412 -3.5080 22 6 8.1439 -1.8720 -2.1468 23 7 8.8986 -1.3494 -1.2037 24 14 8.4222 -3.6357 -2.6956 25 1 8.7562 -3.6571 -4.1424 26 1 9.5430 -4.2246 -1.9196 27 1 7.1882 -4.4278 -2.4607 28 6 4.5499 0.7135 -2.2427 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8898 33 1 1.8932 -0.5138 0.8901 34 1 3.5074 5.4352 -0.5956 35 1 4.2015 4.4037 -1.8693 36 1 2.5295 4.9963 -2.0167 37 1 4.3477 0.1780 -4.7400 38 1 2.5830 0.3944 -4.8503 39 1 3.5451 1.9785 -6.3741 40 1 3.0358 2.9124 -4.9455 41 1 5.8518 1.7849 -5.1740 42 1 5.4267 3.3589 -5.8884 43 1 5.7195 4.2930 -3.8630 44 1 4.3169 3.3673 -3.2859 45 1 7.2632 2.6224 -3.1224 46 1 6.0906 2.7851 -1.7944 47 1 7.4935 0.5657 -1.6367 48 1 9.5991 -1.8802 -0.7933 49 1 4.5196 1.2612 -1.3008 50 1 4.4497 -0.3546 -2.0501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088424263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:56 Heat of formation + Delta-G solvation = 17.518912 kcal Electronic energy + Delta-G solvation = -31761.748583 eV Core-core repulsion = 27791.887620 eV Total energy + Delta-G solvation = -3969.860962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.95717 -41.57903 -38.95310 -36.46961 -36.21794 -35.22724 -34.75309 -33.88653 -32.40888 -31.63466 -29.24157 -28.62799 -27.41861 -26.26221 -25.52969 -24.76912 -23.42441 -22.81075 -21.26323 -20.77258 -19.97693 -19.20453 -18.91083 -18.58837 -17.48221 -17.27904 -17.03932 -16.43769 -15.95278 -15.65215 -15.44162 -15.24251 -15.17814 -14.95698 -14.87323 -14.45823 -14.23478 -14.12764 -13.90626 -13.71822 -13.60683 -13.51514 -13.11422 -12.96986 -12.80655 -12.67581 -12.60599 -12.45281 -12.36115 -12.20582 -11.94735 -11.88487 -11.76452 -11.50310 -11.39994 -11.28843 -11.16975 -11.01610 -10.78860 -10.35248 -9.62948 -8.98869 -7.92862 -5.21539 0.27453 0.81648 1.29379 1.49355 1.50381 1.56298 1.76573 2.13246 2.57362 2.96123 3.20627 3.40584 3.49475 3.77163 3.84787 3.89771 4.04533 4.05766 4.09904 4.19086 4.19174 4.24951 4.26362 4.33629 4.40906 4.47596 4.55662 4.58735 4.65014 4.67528 4.76784 4.80864 4.85091 4.85661 4.93811 4.97300 5.00436 5.04977 5.16002 5.16571 5.22587 5.32542 5.38303 5.43303 5.49281 5.55244 5.68304 6.27940 6.31149 6.99002 7.16607 7.35727 8.09653 8.32463 9.30036 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.004581 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.426034 B = 6110.372316 C = 7005.313406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.050 3.950 4 N -0.374 5.374 5 O 0.092 5.908 6 C 0.028 3.972 7 C -0.088 4.088 8 C -0.268 4.268 9 C 0.607 3.393 10 O -0.558 6.558 11 N -0.577 5.577 12 C 0.108 3.892 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.118 4.118 17 C 0.156 3.844 18 H 0.075 0.925 19 N -0.730 5.730 20 C -0.236 4.236 21 H 0.078 0.922 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.964 3.036 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.280 1.280 28 C 0.104 3.896 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.064 0.936 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.294 11.274 -4.132 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.112 4.112 4 N -0.081 5.081 5 O 0.032 5.968 6 C -0.036 4.036 7 C -0.145 4.145 8 C -0.275 4.275 9 C 0.394 3.606 10 O -0.437 6.437 11 N -0.308 5.308 12 C -0.013 4.013 13 C -0.165 4.165 14 C -0.162 4.162 15 C -0.153 4.153 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.092 0.908 19 N -0.369 5.369 20 C -0.368 4.368 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.618 5.618 24 Si 0.793 3.207 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.206 1.206 28 C -0.022 4.022 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.204 0.796 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.922 11.124 -3.305 18.124 hybrid contribution 0.751 -1.345 -0.161 1.549 sum -13.171 9.778 -3.466 16.766 Atomic orbital electron populations 1.21661 0.92269 1.03620 1.01910 1.20098 0.97768 0.86735 1.04317 1.25071 1.00172 0.99273 0.86659 1.73548 1.17523 0.93256 1.23822 1.84499 1.61829 1.27012 1.23450 1.25144 0.97123 0.97994 0.83334 1.20895 1.02924 0.90561 1.00123 1.21917 1.14040 0.96205 0.95381 1.16854 0.81659 0.77624 0.84487 1.90756 1.35481 1.56298 1.61199 1.47755 1.20430 1.53253 1.09387 1.21746 1.02730 0.98610 0.78192 1.21980 0.96961 0.96826 1.00756 1.21820 0.96228 1.01041 0.97158 1.21810 0.99281 0.98997 0.95198 1.21955 0.99849 0.94103 0.99675 1.21041 0.86300 0.91175 0.96793 0.90771 1.42571 1.37444 1.11358 1.45531 1.19522 1.12263 0.89569 1.15433 0.90430 1.25446 0.99180 1.01942 0.99607 1.69792 1.23927 1.37716 1.30325 0.85362 0.76917 0.80815 0.77586 1.20280 1.22672 1.20644 1.22228 0.87592 0.98665 0.93762 0.93228 0.89402 0.92331 0.89972 0.88916 0.86570 0.87791 0.87526 0.89165 0.90934 0.89182 0.91681 0.91845 0.90382 0.90376 0.91930 0.92395 0.92695 0.79559 0.94155 0.91722 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.23 16 2 C -0.05 -1.31 6.55 29.85 0.20 -1.11 16 3 C 0.05 1.49 6.82 45.16 0.31 1.80 16 4 N -0.37 -11.44 12.01 -44.79 -0.54 -11.98 16 5 O 0.09 2.55 11.06 76.96 0.85 3.40 16 6 C 0.03 0.69 7.55 25.48 0.19 0.88 16 7 C -0.09 -1.42 9.97 71.24 0.71 -0.71 16 8 C -0.27 -7.75 4.19 -18.74 -0.08 -7.83 16 9 C 0.61 18.12 5.90 86.65 0.51 18.63 16 10 O -0.56 -18.86 16.02 -4.06 -0.06 -18.92 16 11 N -0.58 -16.39 1.69 -828.66 -1.40 -17.79 16 12 C 0.11 2.74 5.18 86.07 0.45 3.19 16 13 C -0.13 -2.72 5.56 30.65 0.17 -2.55 16 14 C -0.13 -2.66 5.49 30.68 0.17 -2.50 16 15 C -0.12 -2.52 4.52 30.74 0.14 -2.38 16 16 C -0.12 -3.37 5.21 30.88 0.16 -3.21 16 17 C 0.16 5.38 2.29 44.97 0.10 5.48 16 18 H 0.07 2.53 3.29 -2.38 -0.01 2.52 16 19 N -0.73 -33.60 5.12 -323.04 -1.66 -35.25 16 20 C -0.24 -12.11 9.88 84.03 0.83 -11.28 16 21 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.07 -3.77 5.50 84.87 0.47 -3.31 16 23 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16 24 Si 0.96 44.27 29.55 68.60 2.03 46.30 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 C 0.10 3.41 5.49 86.61 0.48 3.88 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.68 5.35 -2.39 -0.01 1.67 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 2.35 6.07 -2.39 -0.01 2.33 16 38 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.55 6.34 -2.39 -0.02 1.53 16 41 H 0.06 1.58 5.47 -2.39 -0.01 1.57 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.39 3.28 -2.39 -0.01 1.38 16 45 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.57 7.85 -2.38 -0.02 1.55 16 47 H 0.37 18.87 7.80 -92.71 -0.72 18.14 16 48 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 49 H 0.06 2.20 6.07 -2.39 -0.01 2.19 16 50 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 Total: -1.00 -65.15 383.16 5.26 -59.89 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.25 Total: 34.30 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.51 Total: -3.25 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -3.31 Total: -121.72 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.79 Total: -15.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.15 5.26 -59.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088424263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.414 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds