Wall clock time and date at job start Tue Mar 31 2020 19:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47144 * 2 1 4 4 O 1.33493 * 126.83026 * 269.68739 * 3 2 1 5 5 N 1.20656 * 113.15894 * 179.77674 * 4 3 2 6 6 C 1.30018 * 112.30056 * 0.50550 * 5 4 3 7 7 C 1.37358 * 126.83166 * 89.99765 * 3 2 1 8 8 C 1.47398 * 128.56348 * 0.02562 * 7 3 2 9 9 O 1.21608 * 120.00179 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00391 * 180.02562 * 8 7 3 11 11 C 1.46501 * 120.00515 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.21027 * 36.93370 * 11 10 8 13 13 C 1.52527 * 110.24817 * 275.00083 * 11 10 8 14 14 C 1.46238 * 114.27366 * 151.61797 * 13 11 10 15 15 N 1.50164 * 107.53105 * 58.40946 * 14 13 11 16 16 C 1.36945 * 120.53775 * 109.56913 * 15 14 13 17 17 H 1.07994 * 120.00048 * 156.67858 * 16 15 14 18 18 C 1.38806 * 119.99975 * 336.67072 * 16 15 14 19 19 N 1.31626 * 120.00244 * 340.42784 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 160.42230 * 18 16 15 21 21 H 1.48503 * 109.46949 * 90.00122 * 20 18 16 22 22 H 1.48497 * 109.47161 * 210.00299 * 20 18 16 23 23 H 1.48499 * 109.47007 * 330.00322 * 20 18 16 24 24 C 1.43437 * 118.92914 * 289.58450 * 15 14 13 25 25 C 1.54900 * 116.07945 * 91.56769 * 24 15 14 26 26 C 1.52993 * 109.35648 * 78.85166 * 25 24 15 27 27 C 1.53002 * 109.35820 * 198.44049 * 25 24 15 28 28 C 1.50129 * 110.24874 * 159.01599 * 11 10 8 29 29 H 1.09005 * 109.47313 * 60.00243 * 1 2 3 30 30 H 1.09002 * 109.47540 * 300.00121 * 1 2 3 31 31 H 1.09002 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47313 * 119.99757 * 2 1 3 33 33 H 1.09002 * 109.47540 * 239.99879 * 2 1 3 34 34 H 1.07993 * 127.33329 * 179.66956 * 6 5 4 35 35 H 0.97009 * 119.99348 * 359.97438 * 10 8 7 36 36 H 1.08996 * 108.52021 * 272.85883 * 13 11 10 37 37 H 1.09001 * 108.52428 * 30.37545 * 13 11 10 38 38 H 1.09004 * 109.84301 * 177.90985 * 14 13 11 39 39 H 1.08996 * 109.84968 * 298.83092 * 14 13 11 40 40 H 0.96998 * 120.00315 * 180.02562 * 19 18 16 41 41 H 1.08996 * 108.16233 * 213.29101 * 24 15 14 42 42 H 1.09005 * 108.15711 * 329.85381 * 24 15 14 43 43 H 1.08996 * 109.47606 * 59.99933 * 26 25 24 44 44 H 1.09007 * 109.47230 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47383 * 299.99816 * 26 25 24 46 46 H 1.09001 * 109.47098 * 59.99828 * 27 25 24 47 47 H 1.09000 * 109.46912 * 180.02562 * 27 25 24 48 48 H 1.09004 * 109.46890 * 299.99840 * 27 25 24 49 49 H 1.08999 * 109.20641 * 337.00380 * 28 11 10 50 50 H 1.09001 * 109.20118 * 96.31178 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.3045 2.1733 -1.0685 5 7 2.6898 3.2806 -0.7833 6 6 2.7548 3.4646 0.5021 7 6 2.3067 2.1972 1.0994 8 6 2.1833 1.8466 2.5258 9 8 1.7925 0.7412 2.8486 10 7 2.5025 2.7514 3.4722 11 6 2.3793 2.4032 4.8899 12 1 2.6638 1.3630 5.0483 13 6 0.9504 2.6385 5.3690 14 6 0.5361 1.7729 6.4725 15 7 1.4875 2.0048 7.6110 16 6 1.0730 2.6553 8.7426 17 1 1.5947 2.5014 9.6756 18 6 -0.0175 3.5124 8.6904 19 7 -0.4136 4.0040 7.5354 20 14 -0.9232 3.9683 10.2593 21 1 -0.3098 5.1853 10.8491 22 1 -2.3504 4.2346 9.9474 23 1 -0.8292 2.8472 11.2286 24 6 2.8374 1.5343 7.4940 25 6 3.8612 2.5406 6.9119 26 6 4.2721 3.5332 8.0012 27 6 5.0987 1.7822 6.4278 28 6 3.2348 3.3119 5.7244 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.0710 4.3575 1.0208 35 1 2.8139 3.6334 3.2147 36 1 0.8592 3.6762 5.6898 37 1 0.2731 2.4783 4.5301 38 1 -0.4783 2.0261 6.7806 39 1 0.5784 0.7295 6.1604 40 1 -1.1754 4.6033 7.4990 41 1 3.1802 1.2356 8.4845 42 1 2.8344 0.6477 6.8599 43 1 4.7244 2.9933 8.8330 44 1 4.9923 4.2426 7.5934 45 1 3.3920 4.0714 8.3531 46 1 4.8090 1.0694 5.6557 47 1 5.8206 2.4887 6.0182 48 1 5.5482 1.2482 7.2651 49 1 4.0309 3.7241 5.1045 50 1 2.6223 4.1273 6.1094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089504348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:29 Heat of formation + Delta-G solvation = 39.877044 kcal Electronic energy + Delta-G solvation = -30901.980740 eV Core-core repulsion = 26933.089299 eV Total energy + Delta-G solvation = -3968.891441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.03017 -39.79331 -38.17993 -35.02263 -34.47348 -34.36952 -33.76481 -31.52354 -30.73797 -30.15927 -27.60185 -26.68700 -25.52830 -25.08634 -24.12836 -23.36633 -22.13961 -21.10612 -20.27456 -19.86304 -18.29527 -17.84711 -17.55693 -16.68921 -16.43158 -15.75951 -15.11514 -14.83162 -14.63726 -14.50645 -14.14537 -13.89319 -13.64399 -13.61892 -13.43874 -13.12776 -12.75098 -12.57580 -12.36485 -12.01723 -11.89888 -11.68449 -11.67779 -11.45634 -11.24471 -11.06599 -10.89589 -10.84793 -10.71315 -10.60993 -10.53300 -10.24446 -10.04650 -10.00944 -9.73766 -9.63957 -9.54892 -9.51140 -9.23937 -8.66615 -8.31634 -6.69948 -5.79022 -3.17042 1.00552 1.67573 2.67656 3.33731 3.36927 3.41297 3.45418 3.48029 4.11680 4.18223 4.51037 4.52498 4.85034 5.02318 5.08192 5.20933 5.24143 5.39213 5.47652 5.49563 5.51077 5.60159 5.67478 5.68644 5.85660 5.90804 5.98959 6.05204 6.07068 6.13667 6.26711 6.30322 6.36392 6.45910 6.56068 6.61300 6.72258 6.78332 6.89852 6.97517 7.03811 7.07679 7.22234 7.26910 7.58599 7.74375 7.75832 7.95731 8.02527 8.40781 8.43337 9.19415 9.87581 10.40881 11.27999 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.003373 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.681761 B = 8298.133390 C = 9052.758571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.047 3.953 4 O 0.089 5.911 5 N -0.358 5.358 6 C 0.021 3.979 7 C -0.256 4.256 8 C 0.593 3.407 9 O -0.532 6.532 10 N -0.709 5.709 11 C 0.148 3.852 12 H 0.086 0.914 13 C -0.132 4.132 14 C 0.169 3.831 15 N -0.585 5.585 16 C -0.242 4.242 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.167 3.833 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.135 4.135 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.393 0.607 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.091 0.909 39 H 0.009 0.991 40 H 0.251 0.749 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.042 0.958 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.041 0.959 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -3.637 -13.276 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.017 4.017 4 O 0.029 5.971 5 N -0.064 5.064 6 C -0.162 4.162 7 C -0.264 4.264 8 C 0.378 3.622 9 O -0.410 6.410 10 N -0.358 5.358 11 C 0.046 3.954 12 H 0.104 0.896 13 C -0.171 4.171 14 C 0.045 3.955 15 N -0.305 5.305 16 C -0.372 4.372 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.726 3.274 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.037 3.963 25 C -0.093 4.093 26 C -0.186 4.186 27 C -0.193 4.193 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.216 0.784 35 H 0.227 0.773 36 H 0.120 0.880 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.692 -3.587 -14.101 16.015 hybrid contribution -0.295 0.965 1.346 1.683 sum 6.398 -2.621 -12.755 14.508 Atomic orbital electron populations 1.21713 0.92813 1.03075 1.02722 1.20388 0.97299 0.85427 1.05473 1.24921 0.95455 0.96242 0.85110 1.84554 1.61520 1.17516 1.33486 1.73639 1.16652 0.98490 1.17576 1.26390 1.00843 0.99329 0.89588 1.22285 1.13150 0.95096 0.95863 1.16746 0.77830 0.84798 0.82783 1.90786 1.46576 1.21548 1.82055 1.46096 1.66742 1.15869 1.07072 1.20544 0.98375 0.99903 0.76616 0.89623 1.21331 0.92361 1.05823 0.97623 1.20088 0.96338 0.92974 0.86075 1.44261 1.03634 1.65924 1.16719 1.19155 1.12087 1.18790 0.87144 0.91593 1.24852 1.01199 0.97164 0.96302 1.69956 1.27936 1.33317 1.23333 0.86401 0.79347 0.78132 0.83507 1.21693 1.21751 1.20703 1.20501 0.85276 0.93075 0.97439 1.21933 0.95365 0.97278 0.94717 1.21742 1.01081 0.98350 0.97419 1.21852 0.97474 0.99699 1.00308 1.21783 0.97853 0.98780 0.95521 0.92501 0.91503 0.90951 0.86652 0.89410 0.78362 0.77343 0.87989 0.95260 0.89123 0.97273 0.93855 0.94864 0.95327 0.93894 0.94838 0.90902 0.93383 0.93768 0.93264 0.94070 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.16 0.37 -1.00 16 2 C -0.05 -0.46 6.05 -27.88 -0.17 -0.63 16 3 C 0.05 0.55 6.80 -34.63 -0.24 0.32 16 4 O 0.09 1.07 11.06 18.65 0.21 1.27 16 5 N -0.36 -4.48 12.01 31.80 0.38 -4.09 16 6 C 0.02 0.24 11.95 -14.73 -0.18 0.06 16 7 C -0.26 -3.32 6.47 -102.89 -0.67 -3.99 16 8 C 0.59 9.14 7.67 -12.53 -0.10 9.05 16 9 O -0.53 -9.66 14.96 5.27 0.08 -9.59 16 10 N -0.71 -10.46 5.01 -56.53 -0.28 -10.74 16 11 C 0.15 2.61 2.10 -69.60 -0.15 2.46 16 12 H 0.09 1.66 5.29 -51.93 -0.27 1.39 16 13 C -0.13 -2.75 4.73 -30.19 -0.14 -2.90 16 14 C 0.17 3.90 5.24 -5.21 -0.03 3.87 16 15 N -0.59 -13.59 2.60 -175.08 -0.46 -14.04 16 16 C -0.24 -6.17 8.94 -15.06 -0.13 -6.30 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -23.79 9.43 55.49 0.52 -23.27 16 20 Si 0.90 20.91 29.60 -169.99 -5.03 15.88 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.33 4.00 -4.66 -0.02 3.31 16 25 C -0.09 -1.53 0.76 -152.54 -0.12 -1.64 16 26 C -0.13 -2.22 8.28 37.15 0.31 -1.91 16 27 C -0.14 -1.98 8.20 37.16 0.30 -1.67 16 28 C -0.10 -1.74 4.15 -27.19 -0.11 -1.85 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.28 6.78 -51.93 -0.35 0.92 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.20 1.59 7.88 -52.49 -0.41 1.18 16 35 H 0.39 4.73 7.81 -40.82 -0.32 4.41 16 36 H 0.10 2.40 5.29 -51.93 -0.27 2.12 16 37 H 0.03 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.09 2.34 6.05 -51.93 -0.31 2.03 16 39 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 40 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 42 H 0.03 0.56 6.68 -51.93 -0.35 0.22 16 43 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.07 1.49 7.45 -51.93 -0.39 1.10 16 46 H 0.05 0.71 7.57 -51.93 -0.39 0.31 16 47 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.04 0.61 7.63 -51.93 -0.40 0.21 16 50 H 0.08 1.67 6.66 -51.93 -0.35 1.33 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -28.26 386.40 -7.89 -36.15 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.99 Total: 5.44 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.15 Total: -2.83 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.17 Total: -52.15 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.29 Total: -8.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.26 -7.89 -36.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089504348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.029 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds