Wall clock time and date at job start Tue Mar 31 2020 19:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47144 * 2 1 4 4 O 1.33493 * 126.83026 * 269.68739 * 3 2 1 5 5 N 1.20656 * 113.15894 * 179.77674 * 4 3 2 6 6 C 1.30018 * 112.30056 * 0.50550 * 5 4 3 7 7 C 1.37358 * 126.83166 * 89.99765 * 3 2 1 8 8 C 1.47398 * 128.56348 * 0.02562 * 7 3 2 9 9 O 1.21608 * 120.00179 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00391 * 180.02562 * 8 7 3 11 11 C 1.46501 * 120.00515 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.21027 * 36.93370 * 11 10 8 13 13 C 1.52527 * 110.24817 * 275.00083 * 11 10 8 14 14 C 1.46238 * 114.27366 * 151.61797 * 13 11 10 15 15 N 1.50164 * 107.53105 * 58.40946 * 14 13 11 16 16 C 1.36945 * 120.53775 * 109.56913 * 15 14 13 17 17 H 1.07994 * 120.00048 * 156.67858 * 16 15 14 18 18 C 1.38806 * 119.99975 * 336.67072 * 16 15 14 19 19 N 1.31626 * 120.00244 * 340.42784 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 160.42230 * 18 16 15 21 21 H 1.48503 * 109.46949 * 90.00122 * 20 18 16 22 22 H 1.48497 * 109.47161 * 210.00299 * 20 18 16 23 23 H 1.48499 * 109.47007 * 330.00322 * 20 18 16 24 24 C 1.43437 * 118.92914 * 289.58450 * 15 14 13 25 25 C 1.54900 * 116.07945 * 91.56769 * 24 15 14 26 26 C 1.52993 * 109.35648 * 78.85166 * 25 24 15 27 27 C 1.53002 * 109.35820 * 198.44049 * 25 24 15 28 28 C 1.50129 * 110.24874 * 159.01599 * 11 10 8 29 29 H 1.09005 * 109.47313 * 60.00243 * 1 2 3 30 30 H 1.09002 * 109.47540 * 300.00121 * 1 2 3 31 31 H 1.09002 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47313 * 119.99757 * 2 1 3 33 33 H 1.09002 * 109.47540 * 239.99879 * 2 1 3 34 34 H 1.07993 * 127.33329 * 179.66956 * 6 5 4 35 35 H 0.97009 * 119.99348 * 359.97438 * 10 8 7 36 36 H 1.08996 * 108.52021 * 272.85883 * 13 11 10 37 37 H 1.09001 * 108.52428 * 30.37545 * 13 11 10 38 38 H 1.09004 * 109.84301 * 177.90985 * 14 13 11 39 39 H 1.08996 * 109.84968 * 298.83092 * 14 13 11 40 40 H 0.96998 * 120.00315 * 180.02562 * 19 18 16 41 41 H 1.08996 * 108.16233 * 213.29101 * 24 15 14 42 42 H 1.09005 * 108.15711 * 329.85381 * 24 15 14 43 43 H 1.08996 * 109.47606 * 59.99933 * 26 25 24 44 44 H 1.09007 * 109.47230 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47383 * 299.99816 * 26 25 24 46 46 H 1.09001 * 109.47098 * 59.99828 * 27 25 24 47 47 H 1.09000 * 109.46912 * 180.02562 * 27 25 24 48 48 H 1.09004 * 109.46890 * 299.99840 * 27 25 24 49 49 H 1.08999 * 109.20641 * 337.00380 * 28 11 10 50 50 H 1.09001 * 109.20118 * 96.31178 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.3045 2.1733 -1.0685 5 7 2.6898 3.2806 -0.7833 6 6 2.7548 3.4646 0.5021 7 6 2.3067 2.1972 1.0994 8 6 2.1833 1.8466 2.5258 9 8 1.7925 0.7412 2.8486 10 7 2.5025 2.7514 3.4722 11 6 2.3793 2.4032 4.8899 12 1 2.6638 1.3630 5.0483 13 6 0.9504 2.6385 5.3690 14 6 0.5361 1.7729 6.4725 15 7 1.4875 2.0048 7.6110 16 6 1.0730 2.6553 8.7426 17 1 1.5947 2.5014 9.6756 18 6 -0.0175 3.5124 8.6904 19 7 -0.4136 4.0040 7.5354 20 14 -0.9232 3.9683 10.2593 21 1 -0.3098 5.1853 10.8491 22 1 -2.3504 4.2346 9.9474 23 1 -0.8292 2.8472 11.2286 24 6 2.8374 1.5343 7.4940 25 6 3.8612 2.5406 6.9119 26 6 4.2721 3.5332 8.0012 27 6 5.0987 1.7822 6.4278 28 6 3.2348 3.3119 5.7244 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.0710 4.3575 1.0208 35 1 2.8139 3.6334 3.2147 36 1 0.8592 3.6762 5.6898 37 1 0.2731 2.4783 4.5301 38 1 -0.4783 2.0261 6.7806 39 1 0.5784 0.7295 6.1604 40 1 -1.1754 4.6033 7.4990 41 1 3.1802 1.2356 8.4845 42 1 2.8344 0.6477 6.8599 43 1 4.7244 2.9933 8.8330 44 1 4.9923 4.2426 7.5934 45 1 3.3920 4.0714 8.3531 46 1 4.8090 1.0694 5.6557 47 1 5.8206 2.4887 6.0182 48 1 5.5482 1.2482 7.2651 49 1 4.0309 3.7241 5.1045 50 1 2.6223 4.1273 6.1094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089504348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:28 Heat of formation + Delta-G solvation = 24.515521 kcal Electronic energy + Delta-G solvation = -30902.646866 eV Core-core repulsion = 26933.089299 eV Total energy + Delta-G solvation = -3969.557567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.95594 -41.18100 -39.62737 -36.31427 -36.00837 -35.51394 -34.74942 -33.23560 -32.32768 -31.19511 -29.12413 -28.02178 -27.28699 -26.18605 -25.01678 -24.93494 -23.46420 -22.44792 -21.48253 -21.41597 -19.60389 -18.85531 -18.72735 -18.52158 -17.44981 -17.19721 -16.80808 -16.01701 -15.89183 -15.77633 -15.54191 -15.22399 -15.18299 -14.97695 -14.52346 -14.45831 -14.15644 -13.83406 -13.55747 -13.48362 -13.24638 -13.03127 -12.91267 -12.83651 -12.64034 -12.49748 -12.48352 -12.35952 -12.24780 -11.91346 -11.86894 -11.66939 -11.52659 -11.46423 -11.39710 -11.11523 -11.03359 -10.91847 -10.55037 -10.44320 -9.88096 -8.59860 -7.77495 -5.16393 0.02154 0.75870 1.47851 1.52390 1.59125 1.71581 2.16559 2.25737 2.57625 3.22773 3.29472 3.35966 3.56974 3.60956 3.97015 4.00317 4.08164 4.10228 4.19413 4.26588 4.37440 4.47442 4.50348 4.56096 4.72813 4.77812 4.81358 4.82565 4.92322 4.95825 4.96437 4.98204 5.09003 5.12657 5.14551 5.24105 5.28727 5.29991 5.33704 5.36900 5.49590 5.55472 5.67799 5.70741 5.74186 5.81911 6.11295 6.46765 6.55592 7.10522 7.20701 7.22688 7.95465 8.47449 9.27049 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.003373 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.681761 B = 8298.133390 C = 9052.758571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.059 3.941 4 O 0.087 5.913 5 N -0.374 5.374 6 C 0.036 3.964 7 C -0.281 4.281 8 C 0.595 3.405 9 O -0.564 6.564 10 N -0.701 5.701 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.116 4.116 14 C 0.175 3.825 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.062 0.938 18 C -0.039 4.039 19 N -0.916 5.916 20 Si 0.949 3.051 21 H -0.289 1.289 22 H -0.298 1.298 23 H -0.279 1.279 24 C 0.163 3.837 25 C -0.085 4.085 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.092 4.092 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.409 0.591 36 H 0.077 0.923 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.008 0.992 40 H 0.245 0.755 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.046 0.954 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -3.577 -14.539 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.006 4.006 4 O 0.030 5.970 5 N -0.082 5.082 6 C -0.147 4.147 7 C -0.288 4.288 8 C 0.382 3.618 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.063 3.937 12 H 0.091 0.909 13 C -0.155 4.155 14 C 0.050 3.950 15 N -0.317 5.317 16 C -0.375 4.375 17 H 0.080 0.920 18 C -0.235 4.235 19 N -0.562 5.562 20 Si 0.779 3.221 21 H -0.216 1.216 22 H -0.225 1.225 23 H -0.205 1.205 24 C 0.035 3.965 25 C -0.089 4.089 26 C -0.179 4.179 27 C -0.185 4.185 28 C -0.130 4.130 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.247 0.753 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.764 -3.526 -15.385 18.054 hybrid contribution -0.943 0.879 1.729 2.156 sum 7.822 -2.647 -13.656 15.959 Atomic orbital electron populations 1.21693 0.92582 1.03960 1.01758 1.20497 0.97346 0.84431 1.06347 1.25306 0.93725 0.96735 0.84835 1.84559 1.61595 1.17501 1.33315 1.73637 1.17651 0.98799 1.18116 1.26839 0.99249 0.99486 0.89101 1.22082 1.15445 0.96623 0.94662 1.17010 0.76834 0.84235 0.83731 1.90772 1.47955 1.22950 1.82760 1.45880 1.66730 1.16725 1.05773 1.20110 0.95953 0.99339 0.78327 0.90899 1.21097 0.94543 1.03599 0.96301 1.19902 0.94983 0.93168 0.86911 1.44289 1.05135 1.65937 1.16300 1.19281 1.12143 1.18353 0.87755 0.92027 1.25390 1.02045 0.97723 0.98358 1.70098 1.27873 1.33789 1.24453 0.85568 0.77831 0.77711 0.81006 1.21598 1.22472 1.20494 1.20614 0.84472 0.93897 0.97533 1.21838 0.95693 0.96714 0.94643 1.21648 0.99980 0.98508 0.97741 1.21762 0.96201 0.99824 1.00692 1.21629 0.98092 0.97555 0.95739 0.91350 0.94456 0.89233 0.88071 0.86166 0.75343 0.75456 0.90413 0.96458 0.92348 0.97355 0.94595 0.95303 0.95177 0.93063 0.92464 0.94691 0.93497 0.91588 0.92237 0.90803 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.81 16 2 C -0.05 -0.86 6.05 29.85 0.18 -0.68 16 3 C 0.06 1.29 6.80 25.48 0.17 1.46 16 4 O 0.09 1.92 11.06 76.98 0.85 2.78 16 5 N -0.37 -8.58 12.01 -54.20 -0.65 -9.23 16 6 C 0.04 0.73 11.95 87.29 1.04 1.77 16 7 C -0.28 -6.88 6.47 -18.75 -0.12 -7.00 16 8 C 0.59 17.89 7.67 86.66 0.66 18.55 16 9 O -0.56 -20.59 14.96 -4.06 -0.06 -20.65 16 10 N -0.70 -19.83 5.01 -451.01 -2.26 -22.09 16 11 C 0.17 5.80 2.10 43.91 0.09 5.89 16 12 H 0.07 2.79 5.29 -2.39 -0.01 2.78 16 13 C -0.12 -4.98 4.73 28.36 0.13 -4.84 16 14 C 0.17 8.37 5.24 83.58 0.44 8.80 16 15 N -0.60 -28.31 2.60 -707.84 -1.84 -30.15 16 16 C -0.25 -12.76 8.94 84.03 0.75 -12.01 16 17 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 18 C -0.04 -2.09 4.91 84.86 0.42 -1.67 16 19 N -0.92 -50.10 9.43 21.65 0.20 -49.89 16 20 Si 0.95 43.90 29.60 68.60 2.03 45.93 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.16 6.49 4.00 87.59 0.35 6.84 16 25 C -0.09 -2.79 0.76 -50.91 -0.04 -2.83 16 26 C -0.12 -4.00 8.28 71.98 0.60 -3.41 16 27 C -0.13 -3.29 8.20 71.98 0.59 -2.70 16 28 C -0.09 -3.04 4.15 30.30 0.13 -2.91 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 2.17 6.78 -2.38 -0.02 2.16 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.23 2.89 7.88 -2.91 -0.02 2.87 16 35 H 0.41 8.93 7.81 -92.70 -0.72 8.21 16 36 H 0.08 3.78 5.29 -2.39 -0.01 3.77 16 37 H 0.02 0.75 7.90 -2.39 -0.02 0.73 16 38 H 0.06 3.17 6.05 -2.38 -0.01 3.15 16 39 H 0.01 0.39 8.13 -2.39 -0.02 0.38 16 40 H 0.24 13.29 8.31 -92.71 -0.77 12.52 16 41 H 0.03 1.16 7.83 -2.39 -0.02 1.14 16 42 H 0.03 1.18 6.68 -2.38 -0.02 1.16 16 43 H 0.05 1.57 8.13 -2.39 -0.02 1.56 16 44 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 46 H 0.05 1.24 7.57 -2.39 -0.02 1.22 16 47 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 48 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.07 1.96 7.63 -2.39 -0.02 1.94 16 50 H 0.05 2.02 6.66 -2.39 -0.02 2.01 16 Total: -1.00 -63.25 386.40 4.61 -58.64 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.23 Total: 21.22 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.11 Total: 3.45 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -4.55 Total: -111.36 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.79 Total: -17.87 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.25 4.61 -58.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089504348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.160 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds