Wall clock time and date at job start Tue Mar 31 2020 19:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47095 * 2 1 4 4 O 1.33492 * 126.82452 * 270.10281 * 3 2 1 5 5 N 1.20661 * 113.15506 * 180.30718 * 4 3 2 6 6 C 1.30018 * 112.30247 * 359.74925 * 5 4 3 7 7 C 1.37363 * 126.83218 * 89.99752 * 3 2 1 8 8 C 1.47397 * 128.56272 * 359.97438 * 7 3 2 9 9 O 1.21606 * 120.00129 * 359.69621 * 8 7 3 10 10 N 1.34780 * 119.99573 * 179.69960 * 8 7 3 11 11 C 1.46494 * 119.99706 * 180.02562 * 10 8 7 12 12 H 1.09007 * 108.45018 * 327.31202 * 11 10 8 13 13 C 1.47097 * 108.51702 * 84.99766 * 11 10 8 14 14 C 1.54861 * 110.18570 * 184.14069 * 13 11 10 15 15 N 1.44667 * 109.55936 * 288.47385 * 14 13 11 16 16 C 1.36939 * 118.81382 * 270.94836 * 15 14 13 17 17 H 1.07998 * 119.99861 * 144.38529 * 16 15 14 18 18 C 1.38807 * 119.99507 * 324.38996 * 16 15 14 19 19 N 1.31621 * 119.99684 * 154.22913 * 18 16 15 20 20 Si 1.86797 * 120.00372 * 334.22421 * 18 16 15 21 21 H 1.48502 * 109.47128 * 95.34143 * 20 18 16 22 22 H 1.48502 * 109.47100 * 215.33900 * 20 18 16 23 23 H 1.48495 * 109.46922 * 335.34043 * 20 18 16 24 24 C 1.47598 * 122.54125 * 90.95671 * 15 14 13 25 25 C 1.53944 * 112.14496 * 317.85922 * 24 15 14 26 26 C 1.53001 * 109.36897 * 199.24260 * 25 24 15 27 27 C 1.53002 * 109.26368 * 79.55854 * 25 24 15 28 28 C 1.50882 * 110.09591 * 319.43325 * 25 24 15 29 29 H 1.09007 * 109.47308 * 300.00808 * 1 2 3 30 30 H 1.08999 * 109.46905 * 60.00285 * 1 2 3 31 31 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47462 * 239.99491 * 2 1 3 33 33 H 1.08999 * 109.46918 * 119.99157 * 2 1 3 34 34 H 1.07990 * 127.33786 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00132 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.32907 * 304.31901 * 13 11 10 37 37 H 1.09003 * 109.32505 * 63.96609 * 13 11 10 38 38 H 1.08995 * 109.45172 * 48.69010 * 14 13 11 39 39 H 1.08992 * 109.45022 * 168.61487 * 14 13 11 40 40 H 0.96996 * 120.00001 * 179.97438 * 19 18 16 41 41 H 1.08997 * 108.94984 * 197.16826 * 24 15 14 42 42 H 1.09006 * 108.87997 * 78.49718 * 24 15 14 43 43 H 1.09007 * 109.46846 * 180.63245 * 26 25 24 44 44 H 1.08991 * 109.47481 * 300.63388 * 26 25 24 45 45 H 1.09000 * 109.47092 * 60.63760 * 26 25 24 46 46 H 1.08993 * 109.47172 * 298.26334 * 27 25 24 47 47 H 1.08997 * 109.47010 * 58.26846 * 27 25 24 48 48 H 1.09005 * 109.46986 * 178.26136 * 27 25 24 49 49 H 1.09000 * 109.48735 * 331.93192 * 28 25 24 50 50 H 1.08991 * 109.51497 * 211.86640 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2972 2.1758 -1.0686 5 7 2.6941 3.2790 -0.7834 6 6 2.7611 3.4624 0.5020 7 6 2.3068 2.1972 1.0994 8 6 2.1824 1.8470 2.5258 9 8 1.7858 0.7437 2.8486 10 7 2.5081 2.7497 3.4722 11 6 2.3849 2.4015 4.8898 12 1 1.5453 1.7158 5.0049 13 6 3.6135 1.7098 5.3093 14 6 3.4829 1.2313 6.7764 15 7 3.5365 2.3720 7.6644 16 6 4.7555 2.7939 8.1240 17 1 4.9430 3.8477 8.2684 18 6 5.7502 1.8672 8.4043 19 7 7.0161 2.2234 8.3488 20 14 5.2923 0.1145 8.8601 21 1 5.3398 -0.7410 7.6472 22 1 6.2529 -0.4019 9.8680 23 1 3.9202 0.0931 9.4275 24 6 2.3271 3.1001 8.0955 25 6 1.3347 3.3133 6.9382 26 6 0.3709 4.4457 7.2983 27 6 0.5414 2.0251 6.7097 28 6 2.0795 3.6727 5.6762 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.0816 4.3537 1.0207 35 1 2.8246 3.6296 3.2146 36 1 3.7815 0.8487 4.6626 37 1 4.4585 2.3934 5.2266 38 1 2.5337 0.7114 6.9055 39 1 4.3028 0.5527 7.0111 40 1 7.7111 1.5760 8.5450 41 1 2.6216 4.0715 8.4928 42 1 1.8346 2.5304 8.8836 43 1 -0.3397 4.5905 6.4845 44 1 -0.1682 4.1878 8.2098 45 1 0.9339 5.3654 7.4570 46 1 1.2239 1.2232 6.4283 47 1 0.0190 1.7527 7.6267 48 1 -0.1839 2.1819 5.9112 49 1 3.0127 4.1733 5.9347 50 1 1.4663 4.3378 5.0683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089504349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:32 Heat of formation + Delta-G solvation = 56.914164 kcal Electronic energy + Delta-G solvation = -30841.272584 eV Core-core repulsion = 26873.119928 eV Total energy + Delta-G solvation = -3968.152656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.10123 -40.29096 -38.64139 -35.22678 -34.69774 -34.54767 -33.86404 -31.74719 -31.02121 -30.26592 -27.82124 -27.13510 -25.76472 -25.29984 -24.22334 -23.97588 -22.32061 -21.40574 -20.45556 -19.89263 -18.45132 -17.92315 -17.72888 -16.75916 -16.48654 -16.37537 -15.34965 -14.98277 -14.92534 -14.71726 -14.57418 -14.17788 -13.81866 -13.74552 -13.51995 -13.24367 -12.89831 -12.83066 -12.69246 -12.37951 -12.13557 -11.98677 -11.89383 -11.78305 -11.66977 -11.54390 -11.15553 -11.00564 -10.80538 -10.69612 -10.60321 -10.49053 -10.34784 -10.06203 -9.88287 -9.79424 -9.64415 -9.51311 -9.43727 -8.83161 -8.44355 -6.83451 -6.01578 -3.37113 0.91657 1.60634 2.59554 3.20202 3.26941 3.33040 3.48414 3.53670 4.04137 4.10358 4.43303 4.53087 4.75371 4.91175 4.92408 4.94407 5.01055 5.12516 5.15795 5.24487 5.37856 5.41945 5.51221 5.57470 5.59775 5.68116 5.75298 5.80553 5.84996 5.92476 5.93754 6.01004 6.07497 6.09841 6.17851 6.21189 6.37283 6.43670 6.49568 6.55367 6.69497 6.72372 6.78996 6.82767 6.87439 7.10327 7.57704 7.95538 8.06939 8.24411 8.34995 9.03129 9.73331 10.09612 11.14093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.003499 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.181893 B = 7999.783357 C = 8602.668445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.049 3.951 4 O 0.090 5.910 5 N -0.357 5.357 6 C 0.022 3.978 7 C -0.259 4.259 8 C 0.594 3.406 9 O -0.535 6.535 10 N -0.715 5.715 11 C 0.143 3.857 12 H 0.098 0.902 13 C -0.152 4.152 14 C 0.144 3.856 15 N -0.600 5.600 16 C -0.273 4.273 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.896 5.896 20 Si 0.871 3.129 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.270 1.270 24 C 0.159 3.841 25 C -0.078 4.078 26 C -0.134 4.134 27 C -0.159 4.159 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.200 0.800 35 H 0.395 0.605 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 0.482 -14.332 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.016 4.016 4 O 0.030 5.970 5 N -0.062 5.062 6 C -0.160 4.160 7 C -0.266 4.266 8 C 0.380 3.620 9 O -0.414 6.414 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.116 0.884 13 C -0.193 4.193 14 C 0.017 3.983 15 N -0.323 5.323 16 C -0.401 4.401 17 H 0.095 0.905 18 C -0.162 4.162 19 N -0.537 5.537 20 Si 0.701 3.299 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.195 1.195 24 C 0.034 3.966 25 C -0.080 4.080 26 C -0.191 4.191 27 C -0.216 4.216 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.217 0.783 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.893 0.412 -15.108 20.529 hybrid contribution 0.215 -0.608 0.883 1.094 sum -13.678 -0.197 -14.225 19.735 Atomic orbital electron populations 1.21704 0.92894 1.03039 1.02547 1.20397 0.97200 0.85479 1.05653 1.24921 0.95417 0.96088 0.85140 1.84565 1.61232 1.17747 1.33445 1.73652 1.16287 0.98700 1.17572 1.26400 1.00695 0.99366 0.89580 1.22238 1.13465 0.95195 0.95734 1.16768 0.77638 0.84670 0.82904 1.90774 1.47179 1.21308 1.82115 1.46256 1.66574 1.16443 1.07158 1.20451 1.00527 0.97775 0.77178 0.88427 1.21752 0.97729 1.00265 0.99512 1.21210 0.99105 0.90157 0.87833 1.43889 1.02963 1.33866 1.51571 1.18795 0.87528 0.93161 1.40607 0.90479 1.25368 0.94976 0.97658 0.98230 1.69911 0.99027 1.35511 1.49278 0.87056 0.78376 0.86604 0.77862 1.21373 1.23034 1.19473 1.21320 0.86635 0.96362 0.92331 1.20671 0.95693 0.95087 0.96541 1.21832 0.98489 0.97931 1.00894 1.22420 0.99903 0.98396 1.00842 1.21307 1.01387 0.96168 0.95311 0.91734 0.92458 0.90958 0.89272 0.86623 0.78284 0.77173 0.92793 0.90892 0.93513 0.92801 0.92775 0.92379 0.96279 0.93218 0.92797 0.92617 0.90398 0.93068 0.93348 0.89937 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.05 -0.44 6.05 -27.88 -0.17 -0.61 16 3 C 0.05 0.54 6.80 -34.63 -0.24 0.30 16 4 O 0.09 1.03 11.06 18.65 0.21 1.23 16 5 N -0.36 -4.28 12.01 31.81 0.38 -3.90 16 6 C 0.02 0.24 11.95 -14.72 -0.18 0.06 16 7 C -0.26 -3.13 6.47 -102.89 -0.67 -3.80 16 8 C 0.59 8.40 7.66 -12.53 -0.10 8.30 16 9 O -0.54 -8.89 14.75 5.27 0.08 -8.81 16 10 N -0.72 -9.50 4.88 -57.90 -0.28 -9.78 16 11 C 0.14 2.22 1.79 -70.99 -0.13 2.09 16 12 H 0.10 1.59 3.95 -51.92 -0.21 1.39 16 13 C -0.15 -2.87 5.20 -28.58 -0.15 -3.02 16 14 C 0.14 3.06 4.47 -4.04 -0.02 3.04 16 15 N -0.60 -13.38 1.89 -172.04 -0.32 -13.70 16 16 C -0.27 -7.26 9.71 -15.06 -0.15 -7.40 16 17 H 0.08 2.21 8.05 -52.49 -0.42 1.78 16 18 C 0.04 1.08 5.22 -17.43 -0.09 0.98 16 19 N -0.90 -26.75 13.97 55.49 0.78 -25.97 16 20 Si 0.87 21.99 25.19 -169.99 -4.28 17.71 16 21 H -0.29 -7.09 6.64 56.52 0.38 -6.72 16 22 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.16 2.95 5.13 -2.95 -0.02 2.93 16 25 C -0.08 -1.15 0.75 -155.08 -0.12 -1.27 16 26 C -0.13 -1.63 8.15 37.16 0.30 -1.32 16 27 C -0.16 -2.28 6.75 37.16 0.25 -2.03 16 28 C -0.10 -1.51 4.39 -28.01 -0.12 -1.64 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.21 6.78 -51.93 -0.35 0.86 16 34 H 0.20 1.47 7.88 -52.49 -0.41 1.06 16 35 H 0.39 4.26 7.98 -40.82 -0.33 3.93 16 36 H 0.05 1.04 7.95 -51.93 -0.41 0.63 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.05 0.92 5.23 -51.93 -0.27 0.65 16 39 H 0.05 1.29 3.05 -51.93 -0.16 1.14 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 42 H 0.02 0.36 7.95 -51.93 -0.41 -0.05 16 43 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 46 H 0.08 1.25 3.09 -51.93 -0.16 1.09 16 47 H 0.05 0.70 8.09 -51.93 -0.42 0.27 16 48 H 0.05 0.63 7.97 -51.93 -0.41 0.22 16 49 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 50 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -31.23 379.18 -6.63 -37.87 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.69 Total: 3.80 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.21 Total: -4.16 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.55 Total: -53.36 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.28 Total: -7.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.28 Total: 17.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.23 -6.63 -37.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089504349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds