Wall clock time and date at job start Tue Mar 31 2020 19:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47095 * 2 1 4 4 O 1.33492 * 126.82452 * 270.10281 * 3 2 1 5 5 N 1.20661 * 113.15506 * 180.30718 * 4 3 2 6 6 C 1.30018 * 112.30247 * 359.74925 * 5 4 3 7 7 C 1.37363 * 126.83218 * 89.99752 * 3 2 1 8 8 C 1.47397 * 128.56272 * 359.97438 * 7 3 2 9 9 O 1.21606 * 120.00129 * 359.69621 * 8 7 3 10 10 N 1.34780 * 119.99573 * 179.69960 * 8 7 3 11 11 C 1.46494 * 119.99706 * 180.02562 * 10 8 7 12 12 H 1.09007 * 108.45018 * 327.31202 * 11 10 8 13 13 C 1.47097 * 108.51702 * 84.99766 * 11 10 8 14 14 C 1.54861 * 110.18570 * 184.14069 * 13 11 10 15 15 N 1.44667 * 109.55936 * 288.47385 * 14 13 11 16 16 C 1.36939 * 118.81382 * 270.94836 * 15 14 13 17 17 H 1.07998 * 119.99861 * 144.38529 * 16 15 14 18 18 C 1.38807 * 119.99507 * 324.38996 * 16 15 14 19 19 N 1.31621 * 119.99684 * 154.22913 * 18 16 15 20 20 Si 1.86797 * 120.00372 * 334.22421 * 18 16 15 21 21 H 1.48502 * 109.47128 * 95.34143 * 20 18 16 22 22 H 1.48502 * 109.47100 * 215.33900 * 20 18 16 23 23 H 1.48495 * 109.46922 * 335.34043 * 20 18 16 24 24 C 1.47598 * 122.54125 * 90.95671 * 15 14 13 25 25 C 1.53944 * 112.14496 * 317.85922 * 24 15 14 26 26 C 1.53001 * 109.36897 * 199.24260 * 25 24 15 27 27 C 1.53002 * 109.26368 * 79.55854 * 25 24 15 28 28 C 1.50882 * 110.09591 * 319.43325 * 25 24 15 29 29 H 1.09007 * 109.47308 * 300.00808 * 1 2 3 30 30 H 1.08999 * 109.46905 * 60.00285 * 1 2 3 31 31 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47462 * 239.99491 * 2 1 3 33 33 H 1.08999 * 109.46918 * 119.99157 * 2 1 3 34 34 H 1.07990 * 127.33786 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00132 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.32907 * 304.31901 * 13 11 10 37 37 H 1.09003 * 109.32505 * 63.96609 * 13 11 10 38 38 H 1.08995 * 109.45172 * 48.69010 * 14 13 11 39 39 H 1.08992 * 109.45022 * 168.61487 * 14 13 11 40 40 H 0.96996 * 120.00001 * 179.97438 * 19 18 16 41 41 H 1.08997 * 108.94984 * 197.16826 * 24 15 14 42 42 H 1.09006 * 108.87997 * 78.49718 * 24 15 14 43 43 H 1.09007 * 109.46846 * 180.63245 * 26 25 24 44 44 H 1.08991 * 109.47481 * 300.63388 * 26 25 24 45 45 H 1.09000 * 109.47092 * 60.63760 * 26 25 24 46 46 H 1.08993 * 109.47172 * 298.26334 * 27 25 24 47 47 H 1.08997 * 109.47010 * 58.26846 * 27 25 24 48 48 H 1.09005 * 109.46986 * 178.26136 * 27 25 24 49 49 H 1.09000 * 109.48735 * 331.93192 * 28 25 24 50 50 H 1.08991 * 109.51497 * 211.86640 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2972 2.1758 -1.0686 5 7 2.6941 3.2790 -0.7834 6 6 2.7611 3.4624 0.5020 7 6 2.3068 2.1972 1.0994 8 6 2.1824 1.8470 2.5258 9 8 1.7858 0.7437 2.8486 10 7 2.5081 2.7497 3.4722 11 6 2.3849 2.4015 4.8898 12 1 1.5453 1.7158 5.0049 13 6 3.6135 1.7098 5.3093 14 6 3.4829 1.2313 6.7764 15 7 3.5365 2.3720 7.6644 16 6 4.7555 2.7939 8.1240 17 1 4.9430 3.8477 8.2684 18 6 5.7502 1.8672 8.4043 19 7 7.0161 2.2234 8.3488 20 14 5.2923 0.1145 8.8601 21 1 5.3398 -0.7410 7.6472 22 1 6.2529 -0.4019 9.8680 23 1 3.9202 0.0931 9.4275 24 6 2.3271 3.1001 8.0955 25 6 1.3347 3.3133 6.9382 26 6 0.3709 4.4457 7.2983 27 6 0.5414 2.0251 6.7097 28 6 2.0795 3.6727 5.6762 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.0816 4.3537 1.0207 35 1 2.8246 3.6296 3.2146 36 1 3.7815 0.8487 4.6626 37 1 4.4585 2.3934 5.2266 38 1 2.5337 0.7114 6.9055 39 1 4.3028 0.5527 7.0111 40 1 7.7111 1.5760 8.5450 41 1 2.6216 4.0715 8.4928 42 1 1.8346 2.5304 8.8836 43 1 -0.3397 4.5905 6.4845 44 1 -0.1682 4.1878 8.2098 45 1 0.9339 5.3654 7.4570 46 1 1.2239 1.2232 6.4283 47 1 0.0190 1.7527 7.6267 48 1 -0.1839 2.1819 5.9112 49 1 3.0127 4.1733 5.9347 50 1 1.4663 4.3378 5.0683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089504349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:31 Heat of formation + Delta-G solvation = 37.717618 kcal Electronic energy + Delta-G solvation = -30842.105008 eV Core-core repulsion = 26873.119928 eV Total energy + Delta-G solvation = -3968.985081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.97066 -41.56397 -39.89715 -36.56147 -36.09064 -35.52576 -34.77386 -33.61042 -32.47472 -31.19209 -29.11711 -28.23041 -27.50658 -26.36580 -25.47614 -24.96138 -23.66720 -22.63184 -21.48601 -21.37357 -19.56587 -18.95767 -18.78509 -18.50520 -17.86107 -17.45461 -16.97823 -16.32576 -16.00537 -15.94454 -15.60292 -15.30795 -15.20732 -14.93346 -14.76589 -14.45954 -14.24037 -14.16766 -13.97219 -13.82559 -13.54912 -13.21978 -13.00163 -12.89878 -12.81847 -12.59635 -12.47875 -12.39073 -12.13216 -12.03620 -11.88266 -11.84220 -11.69097 -11.48418 -11.40687 -11.21934 -11.02328 -10.85361 -10.58478 -10.54345 -10.01146 -8.73589 -8.19807 -5.49781 0.00792 0.74643 1.29590 1.39731 1.49645 1.70741 2.14453 2.22921 2.42550 3.04037 3.21611 3.27784 3.40340 3.55745 3.70121 3.94818 3.96651 4.07115 4.13490 4.17779 4.26522 4.33579 4.34987 4.42675 4.62097 4.64838 4.70624 4.72970 4.79152 4.81712 4.82973 4.95102 4.97521 4.98356 5.07425 5.10679 5.12536 5.16195 5.20681 5.29302 5.30828 5.39141 5.44884 5.50552 5.62376 5.64256 5.97368 6.18393 6.51540 7.05149 7.09512 7.17208 7.71083 8.06523 9.00064 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.003499 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.181893 B = 7999.783357 C = 8602.668445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.058 3.942 4 O 0.086 5.914 5 N -0.376 5.376 6 C 0.035 3.965 7 C -0.282 4.282 8 C 0.596 3.404 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.150 3.850 12 H 0.099 0.901 13 C -0.136 4.136 14 C 0.139 3.861 15 N -0.606 5.606 16 C -0.253 4.253 17 H 0.047 0.953 18 C -0.014 4.014 19 N -0.943 5.943 20 Si 0.928 3.072 21 H -0.282 1.282 22 H -0.310 1.310 23 H -0.261 1.261 24 C 0.155 3.845 25 C -0.072 4.072 26 C -0.128 4.128 27 C -0.155 4.155 28 C -0.096 4.096 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.229 0.771 35 H 0.408 0.592 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 0.583 -15.690 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.006 4.006 4 O 0.029 5.971 5 N -0.083 5.083 6 C -0.148 4.148 7 C -0.289 4.289 8 C 0.383 3.617 9 O -0.444 6.444 10 N -0.358 5.358 11 C 0.047 3.953 12 H 0.117 0.883 13 C -0.178 4.178 14 C 0.013 3.987 15 N -0.329 5.329 16 C -0.383 4.383 17 H 0.065 0.935 18 C -0.211 4.211 19 N -0.588 5.588 20 Si 0.758 3.242 21 H -0.210 1.210 22 H -0.239 1.239 23 H -0.186 1.186 24 C 0.031 3.969 25 C -0.074 4.074 26 C -0.186 4.186 27 C -0.211 4.211 28 C -0.134 4.134 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.246 0.754 35 H 0.244 0.756 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.761 0.519 -16.493 23.520 hybrid contribution 1.070 -0.587 1.262 1.756 sum -15.691 -0.068 -15.230 21.867 Atomic orbital electron populations 1.21680 0.91967 1.03992 1.02060 1.20512 0.97873 0.84338 1.06125 1.25330 0.93835 0.96610 0.84860 1.84564 1.61356 1.17746 1.33411 1.73648 1.17375 0.99092 1.18215 1.26847 0.99176 0.99640 0.89109 1.22107 1.15459 0.96471 0.94858 1.16973 0.76893 0.84183 0.83660 1.90759 1.48470 1.22435 1.82688 1.46064 1.66490 1.17085 1.06139 1.20200 0.98472 0.98132 0.78508 0.88298 1.21560 0.98557 0.99638 0.98000 1.21248 0.99039 0.89558 0.88894 1.43956 1.02821 1.34302 1.51841 1.18737 0.89128 0.91829 1.38562 0.93482 1.25872 0.94862 1.01066 0.99303 1.70019 0.99997 1.36736 1.52007 0.86114 0.78002 0.82777 0.77286 1.20994 1.23858 1.18566 1.21495 0.85918 0.95310 0.94225 1.20617 0.95220 0.96785 0.94748 1.21787 0.98118 0.96535 1.02122 1.22350 0.99721 0.97090 1.01973 1.21241 1.00722 0.95783 0.95663 0.93682 0.91376 0.89345 0.86657 0.88226 0.75442 0.75585 0.93497 0.93656 0.91357 0.95631 0.93064 0.93169 0.96072 0.91055 0.91996 0.92561 0.92378 0.92157 0.91468 0.92543 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.26 16 2 C -0.05 -0.82 6.05 29.85 0.18 -0.64 16 3 C 0.06 1.20 6.80 25.48 0.17 1.37 16 4 O 0.09 1.83 11.06 76.99 0.85 2.68 16 5 N -0.38 -8.35 12.01 -54.18 -0.65 -9.00 16 6 C 0.04 0.67 11.95 87.29 1.04 1.72 16 7 C -0.28 -6.38 6.47 -18.74 -0.12 -6.50 16 8 C 0.60 16.03 7.66 86.65 0.66 16.69 16 9 O -0.56 -18.20 14.75 -4.05 -0.06 -18.26 16 10 N -0.71 -17.61 4.88 -455.36 -2.22 -19.83 16 11 C 0.15 4.44 1.79 43.01 0.08 4.51 16 12 H 0.10 3.02 3.95 -2.38 -0.01 3.01 16 13 C -0.14 -5.18 5.20 29.39 0.15 -5.03 16 14 C 0.14 5.89 4.47 87.36 0.39 6.28 16 15 N -0.61 -27.05 1.89 -698.20 -1.32 -28.36 16 16 C -0.25 -13.81 9.71 84.03 0.82 -13.00 16 17 H 0.05 2.82 8.05 -2.91 -0.02 2.80 16 18 C -0.01 -0.83 5.22 84.86 0.44 -0.39 16 19 N -0.94 -58.36 13.97 21.65 0.30 -58.06 16 20 Si 0.93 46.54 25.19 68.60 1.73 48.27 16 21 H -0.28 -13.83 6.64 99.48 0.66 -13.17 16 22 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 23 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 24 C 0.15 5.57 5.13 86.49 0.44 6.01 16 25 C -0.07 -1.94 0.75 -52.55 -0.04 -1.98 16 26 C -0.13 -2.64 8.15 71.98 0.59 -2.05 16 27 C -0.15 -3.95 6.75 71.98 0.49 -3.46 16 28 C -0.10 -2.60 4.39 29.76 0.13 -2.47 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 2.01 6.78 -2.39 -0.02 2.00 16 34 H 0.23 2.70 7.88 -2.92 -0.02 2.68 16 35 H 0.41 7.92 7.98 -92.71 -0.74 7.18 16 36 H 0.05 1.82 7.95 -2.39 -0.02 1.80 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.62 5.23 -2.39 -0.01 2.60 16 39 H 0.03 1.24 3.05 -2.39 -0.01 1.23 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 41 H 0.05 1.87 7.71 -2.39 -0.02 1.85 16 42 H 0.02 0.77 7.95 -2.38 -0.02 0.75 16 43 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 46 H 0.06 1.72 3.09 -2.39 -0.01 1.72 16 47 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 48 H 0.07 1.49 7.97 -2.38 -0.02 1.47 16 49 H 0.06 1.86 7.48 -2.39 -0.02 1.84 16 50 H 0.09 1.87 7.64 -2.39 -0.02 1.85 16 Total: -1.00 -69.73 379.18 4.95 -64.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.18 Total: 17.97 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.14 Total: -0.19 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -3.89 Total: -115.25 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.79 Total: -15.58 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.73 Total: 48.27 kcal Total: -69.73 4.95 -64.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089504349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.498 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds