Wall clock time and date at job start Tue Mar 31 2020 19:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47342 * 2 1 4 4 C 1.35317 * 126.66833 * 89.99721 * 3 2 1 5 5 C 1.42269 * 103.92447 * 179.97438 * 4 3 2 6 6 C 1.48327 * 126.93871 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00077 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99745 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99960 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47037 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.70431 * 59.71510 * 10 9 8 12 12 C 1.53189 * 109.58601 * 180.02562 * 10 9 8 13 13 C 1.53041 * 109.31384 * 174.42300 * 12 10 9 14 14 C 1.53042 * 109.53918 * 298.62978 * 13 12 10 15 15 C 1.52991 * 109.50045 * 181.31648 * 14 13 12 16 16 C 1.52996 * 109.50039 * 301.38628 * 14 13 12 17 17 C 1.53194 * 109.30774 * 61.36548 * 14 13 12 18 18 N 1.46925 * 109.58756 * 299.35847 * 10 9 8 19 19 C 1.36938 * 120.63149 * 6.58851 * 18 10 9 20 20 H 1.07999 * 119.99714 * 328.82554 * 19 18 10 21 21 C 1.38812 * 120.00114 * 148.83148 * 19 18 10 22 22 N 1.31620 * 119.99937 * 162.50076 * 21 19 18 23 23 Si 1.86801 * 119.99949 * 342.49456 * 21 19 18 24 24 H 1.48500 * 109.47129 * 89.99381 * 23 21 19 25 25 H 1.48503 * 109.47063 * 209.99095 * 23 21 19 26 26 H 1.48494 * 109.47361 * 329.99458 * 23 21 19 27 27 N 1.30988 * 106.12074 * 0.26180 * 5 4 3 28 28 O 1.20902 * 111.44007 * 359.53671 * 27 5 4 29 29 H 1.09000 * 109.46903 * 300.00395 * 1 2 3 30 30 H 1.09006 * 109.46875 * 60.00184 * 1 2 3 31 31 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46903 * 239.99605 * 2 1 3 33 33 H 1.08997 * 109.46668 * 119.99883 * 2 1 3 34 34 H 1.08000 * 128.03615 * 359.96049 * 4 3 2 35 35 H 0.97004 * 120.00506 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.46498 * 60.00371 * 9 8 6 37 37 H 1.09000 * 109.47293 * 300.00473 * 9 8 6 38 38 H 1.09001 * 109.50144 * 294.37419 * 12 10 9 39 39 H 1.08998 * 109.49970 * 54.43965 * 12 10 9 40 40 H 1.08997 * 109.46467 * 58.65544 * 13 12 10 41 41 H 1.09004 * 109.45899 * 178.62900 * 13 12 10 42 42 H 1.09000 * 109.47202 * 60.00557 * 15 14 13 43 43 H 1.08994 * 109.47516 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47294 * 300.00591 * 15 14 13 45 45 H 1.09008 * 109.47524 * 59.99468 * 16 14 13 46 46 H 1.08995 * 109.47695 * 179.97438 * 16 14 13 47 47 H 1.09005 * 109.46770 * 299.99470 * 16 14 13 48 48 H 1.09003 * 109.58859 * 65.15189 * 17 14 13 49 49 H 1.08997 * 109.58482 * 185.43390 * 17 14 13 50 50 H 0.97002 * 119.99557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1827 1.0854 5 6 2.7398 3.4195 0.5354 6 6 3.1663 4.6268 1.2841 7 8 3.1637 4.6206 2.4990 8 7 3.5578 5.7302 0.6166 9 6 3.9786 6.9229 1.3561 10 6 4.3691 8.0241 0.3683 11 1 3.5165 8.2688 -0.2651 12 6 4.8102 9.2724 1.1389 13 6 5.3304 10.3194 0.1513 14 6 6.5429 9.7598 -0.5964 15 6 7.0822 10.8189 -1.5598 16 6 7.6327 9.3814 0.4086 17 6 6.1214 8.5170 -1.3866 18 7 5.4868 7.5631 -0.4666 19 6 5.9295 6.2697 -0.3877 20 1 5.8620 5.7319 0.5465 21 6 6.4652 5.6498 -1.5082 22 7 7.1947 4.5627 -1.3733 23 14 6.1504 6.3585 -3.2077 24 1 7.2188 7.3338 -3.5429 25 1 6.1495 5.2618 -4.2089 26 1 4.8328 7.0432 -3.2223 27 7 2.6843 3.2788 -0.7658 28 8 2.2998 2.1751 -1.0750 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2062 1.9143 2.1271 35 1 3.5603 5.7351 -0.3534 36 1 4.8349 6.6775 1.9843 37 1 3.1569 7.2712 1.9818 38 1 3.9613 9.6802 1.6877 39 1 5.6023 9.0068 1.8390 40 1 4.5453 10.5662 -0.5634 41 1 5.6223 11.2180 0.6949 42 1 7.3794 11.7041 -0.9974 43 1 7.9454 10.4199 -2.0923 44 1 6.3059 11.0874 -2.2763 45 1 7.2484 8.6260 1.0941 46 1 8.4958 8.9826 -0.1242 47 1 7.9301 10.2658 0.9722 48 1 5.4119 8.8013 -2.1638 49 1 6.9991 8.0591 -1.8430 50 1 7.5693 4.1297 -2.1564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089727113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:23 Heat of formation + Delta-G solvation = 38.076795 kcal Electronic energy + Delta-G solvation = -30676.366618 eV Core-core repulsion = 26707.397113 eV Total energy + Delta-G solvation = -3968.969506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.79394 -39.44030 -38.53862 -35.27897 -34.89638 -33.58461 -33.18148 -32.19850 -30.73756 -30.06935 -27.84100 -26.77102 -25.52658 -24.88616 -24.13860 -23.05316 -22.58335 -21.93967 -20.07610 -19.35628 -18.39056 -17.60803 -17.31664 -16.68650 -16.11191 -15.61375 -15.33697 -14.90232 -14.68018 -14.37730 -14.12069 -14.06264 -13.75944 -13.58121 -13.41121 -13.30559 -12.92329 -12.78201 -12.60619 -12.29830 -11.94427 -11.90765 -11.62870 -11.56667 -11.51623 -11.44371 -11.07529 -11.03093 -10.95571 -10.64256 -10.54168 -10.34264 -10.11779 -9.98432 -9.81039 -9.77291 -9.44698 -9.43126 -9.26727 -8.67813 -8.32351 -6.91621 -5.96235 -3.37399 1.48470 1.93395 3.13302 3.30092 3.46763 3.48055 3.50369 3.75792 4.35041 4.50337 4.62272 4.79408 4.89794 4.99151 5.14249 5.19680 5.23911 5.26235 5.31206 5.43756 5.48886 5.56186 5.59396 5.64914 5.74373 5.81779 5.82790 5.92673 5.94664 6.00763 6.02843 6.09222 6.12991 6.19118 6.26653 6.29613 6.33730 6.36280 6.47744 6.53458 6.65184 6.72875 6.83195 6.87639 7.03025 7.10617 7.94443 8.05565 8.33460 8.38897 8.70086 8.90834 9.69077 10.06862 11.18484 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003668 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.675295 B = 7630.856437 C = 8657.339486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C -0.045 4.045 4 C -0.182 4.182 5 C -0.015 4.015 6 C 0.594 3.406 7 O -0.548 6.548 8 N -0.674 5.674 9 C 0.135 3.865 10 C 0.163 3.837 11 H 0.036 0.964 12 C -0.131 4.131 13 C -0.096 4.096 14 C -0.085 4.085 15 C -0.139 4.139 16 C -0.127 4.127 17 C 0.139 3.861 18 N -0.601 5.601 19 C -0.264 4.264 20 H 0.091 0.909 21 C 0.035 3.965 22 N -0.901 5.901 23 Si 0.878 3.122 24 H -0.289 1.289 25 H -0.305 1.305 26 H -0.271 1.271 27 N -0.319 5.319 28 O 0.121 5.879 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.176 0.824 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.022 0.978 49 H 0.073 0.927 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -0.391 2.389 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.108 4.108 4 C -0.204 4.204 5 C -0.175 4.175 6 C 0.377 3.623 7 O -0.426 6.426 8 N -0.325 5.325 9 C 0.011 3.989 10 C 0.056 3.944 11 H 0.054 0.946 12 C -0.170 4.170 13 C -0.134 4.134 14 C -0.087 4.087 15 C -0.197 4.197 16 C -0.184 4.184 17 C 0.013 3.987 18 N -0.325 5.325 19 C -0.392 4.392 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.543 5.543 23 Si 0.709 3.291 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.196 1.196 27 N -0.019 5.019 28 O 0.045 5.955 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.194 0.806 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.091 0.909 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.845 0.348 2.175 10.088 hybrid contribution 0.086 0.037 -0.878 0.883 sum -9.759 0.385 1.297 9.853 Atomic orbital electron populations 1.21804 0.93663 1.02501 1.02885 1.20084 0.96425 0.86468 1.04812 1.24431 1.03261 0.97229 0.85871 1.22351 1.04947 0.91941 1.01156 1.23543 1.05783 0.98166 0.89968 1.16807 0.78013 0.81334 0.86157 1.90722 1.56302 1.82952 1.12631 1.45831 1.62769 1.12113 1.11757 1.21360 0.99155 0.84168 0.94231 1.20746 0.90453 0.91684 0.91480 0.94608 1.21998 1.00571 0.96117 0.98329 1.21417 0.97095 0.97135 0.97735 1.21045 0.95373 0.96078 0.96219 1.21823 1.00606 0.98244 0.98999 1.21720 0.97614 1.00193 0.98871 1.21430 0.96442 0.89177 0.91609 1.44360 1.33988 1.08004 1.46192 1.18900 1.36815 0.87096 0.96398 0.89166 1.25301 0.98395 0.95517 0.97348 1.69802 1.33886 1.21021 1.29623 0.87038 0.78832 0.77144 0.86086 1.21622 1.23292 1.19613 1.74262 1.12930 0.98856 1.15828 1.84796 1.60002 1.17323 1.33407 0.92067 0.92042 0.91403 0.89248 0.88506 0.80635 0.74477 0.90786 0.92063 0.92575 0.91097 0.92795 0.92950 0.93206 0.92956 0.93273 0.91087 0.93385 0.94498 0.95970 0.90928 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.90 37.16 0.37 -0.71 16 2 C -0.04 -0.33 6.50 -27.88 -0.18 -0.51 16 3 C -0.04 -0.60 6.73 -35.35 -0.24 -0.84 16 4 C -0.18 -2.79 10.92 -39.08 -0.43 -3.22 16 5 C -0.01 -0.29 7.19 -82.53 -0.59 -0.88 16 6 C 0.59 12.44 7.85 -12.11 -0.10 12.35 16 7 O -0.55 -12.26 16.95 5.37 0.09 -12.17 16 8 N -0.67 -13.87 3.86 -61.09 -0.24 -14.10 16 9 C 0.13 2.53 4.43 -4.04 -0.02 2.51 16 10 C 0.16 2.99 3.00 -67.60 -0.20 2.78 16 11 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 12 C -0.13 -2.02 5.03 -26.61 -0.13 -2.16 16 13 C -0.10 -1.44 4.71 -26.69 -0.13 -1.56 16 14 C -0.09 -1.44 0.77 -154.39 -0.12 -1.56 16 15 C -0.14 -2.04 8.48 37.15 0.32 -1.73 16 16 C -0.13 -2.19 7.99 37.16 0.30 -1.89 16 17 C 0.14 2.89 2.87 -3.70 -0.01 2.87 16 18 N -0.60 -13.09 2.16 -164.77 -0.36 -13.45 16 19 C -0.26 -6.80 7.45 -15.06 -0.11 -6.91 16 20 H 0.09 2.57 6.06 -52.49 -0.32 2.25 16 21 C 0.03 0.96 5.26 -17.43 -0.09 0.86 16 22 N -0.90 -27.00 13.97 55.49 0.78 -26.22 16 23 Si 0.88 22.04 24.34 -169.99 -4.14 17.91 16 24 H -0.29 -7.07 6.57 56.52 0.37 -6.70 16 25 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.27 -6.65 6.72 56.52 0.38 -6.27 16 27 N -0.32 -6.20 11.84 33.29 0.39 -5.81 16 28 O 0.12 1.99 11.18 17.24 0.19 2.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.42 9.08 7.19 -40.82 -0.29 8.79 16 36 H 0.07 1.54 7.39 -51.93 -0.38 1.15 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.36 5.98 -51.92 -0.31 1.05 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.02 0.47 7.04 -51.93 -0.37 0.11 16 49 H 0.07 1.69 4.73 -51.93 -0.25 1.45 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -31.47 386.98 -7.01 -38.48 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.20 Total: 7.93 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.37 Total: -0.58 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.58 Total: -59.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.28 Total: -9.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.47 -7.01 -38.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089727113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.554 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds