Wall clock time and date at job start Tue Mar 31 2020 19:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47342 * 2 1 4 4 C 1.35317 * 126.66833 * 89.99721 * 3 2 1 5 5 C 1.42269 * 103.92447 * 179.97438 * 4 3 2 6 6 C 1.48327 * 126.93871 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00077 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99745 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99960 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47037 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.70431 * 59.71510 * 10 9 8 12 12 C 1.53189 * 109.58601 * 180.02562 * 10 9 8 13 13 C 1.53041 * 109.31384 * 174.42300 * 12 10 9 14 14 C 1.53042 * 109.53918 * 298.62978 * 13 12 10 15 15 C 1.52991 * 109.50045 * 181.31648 * 14 13 12 16 16 C 1.52996 * 109.50039 * 301.38628 * 14 13 12 17 17 C 1.53194 * 109.30774 * 61.36548 * 14 13 12 18 18 N 1.46925 * 109.58756 * 299.35847 * 10 9 8 19 19 C 1.36938 * 120.63149 * 6.58851 * 18 10 9 20 20 H 1.07999 * 119.99714 * 328.82554 * 19 18 10 21 21 C 1.38812 * 120.00114 * 148.83148 * 19 18 10 22 22 N 1.31620 * 119.99937 * 162.50076 * 21 19 18 23 23 Si 1.86801 * 119.99949 * 342.49456 * 21 19 18 24 24 H 1.48500 * 109.47129 * 89.99381 * 23 21 19 25 25 H 1.48503 * 109.47063 * 209.99095 * 23 21 19 26 26 H 1.48494 * 109.47361 * 329.99458 * 23 21 19 27 27 N 1.30988 * 106.12074 * 0.26180 * 5 4 3 28 28 O 1.20902 * 111.44007 * 359.53671 * 27 5 4 29 29 H 1.09000 * 109.46903 * 300.00395 * 1 2 3 30 30 H 1.09006 * 109.46875 * 60.00184 * 1 2 3 31 31 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46903 * 239.99605 * 2 1 3 33 33 H 1.08997 * 109.46668 * 119.99883 * 2 1 3 34 34 H 1.08000 * 128.03615 * 359.96049 * 4 3 2 35 35 H 0.97004 * 120.00506 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.46498 * 60.00371 * 9 8 6 37 37 H 1.09000 * 109.47293 * 300.00473 * 9 8 6 38 38 H 1.09001 * 109.50144 * 294.37419 * 12 10 9 39 39 H 1.08998 * 109.49970 * 54.43965 * 12 10 9 40 40 H 1.08997 * 109.46467 * 58.65544 * 13 12 10 41 41 H 1.09004 * 109.45899 * 178.62900 * 13 12 10 42 42 H 1.09000 * 109.47202 * 60.00557 * 15 14 13 43 43 H 1.08994 * 109.47516 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.47294 * 300.00591 * 15 14 13 45 45 H 1.09008 * 109.47524 * 59.99468 * 16 14 13 46 46 H 1.08995 * 109.47695 * 179.97438 * 16 14 13 47 47 H 1.09005 * 109.46770 * 299.99470 * 16 14 13 48 48 H 1.09003 * 109.58859 * 65.15189 * 17 14 13 49 49 H 1.08997 * 109.58482 * 185.43390 * 17 14 13 50 50 H 0.97002 * 119.99557 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1827 1.0854 5 6 2.7398 3.4195 0.5354 6 6 3.1663 4.6268 1.2841 7 8 3.1637 4.6206 2.4990 8 7 3.5578 5.7302 0.6166 9 6 3.9786 6.9229 1.3561 10 6 4.3691 8.0241 0.3683 11 1 3.5165 8.2688 -0.2651 12 6 4.8102 9.2724 1.1389 13 6 5.3304 10.3194 0.1513 14 6 6.5429 9.7598 -0.5964 15 6 7.0822 10.8189 -1.5598 16 6 7.6327 9.3814 0.4086 17 6 6.1214 8.5170 -1.3866 18 7 5.4868 7.5631 -0.4666 19 6 5.9295 6.2697 -0.3877 20 1 5.8620 5.7319 0.5465 21 6 6.4652 5.6498 -1.5082 22 7 7.1947 4.5627 -1.3733 23 14 6.1504 6.3585 -3.2077 24 1 7.2188 7.3338 -3.5429 25 1 6.1495 5.2618 -4.2089 26 1 4.8328 7.0432 -3.2223 27 7 2.6843 3.2788 -0.7658 28 8 2.2998 2.1751 -1.0750 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2062 1.9143 2.1271 35 1 3.5603 5.7351 -0.3534 36 1 4.8349 6.6775 1.9843 37 1 3.1569 7.2712 1.9818 38 1 3.9613 9.6802 1.6877 39 1 5.6023 9.0068 1.8390 40 1 4.5453 10.5662 -0.5634 41 1 5.6223 11.2180 0.6949 42 1 7.3794 11.7041 -0.9974 43 1 7.9454 10.4199 -2.0923 44 1 6.3059 11.0874 -2.2763 45 1 7.2484 8.6260 1.0941 46 1 8.4958 8.9826 -0.1242 47 1 7.9301 10.2658 0.9722 48 1 5.4119 8.8013 -2.1638 49 1 6.9991 8.0591 -1.8430 50 1 7.5693 4.1297 -2.1564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089727113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:22 Heat of formation + Delta-G solvation = 18.106210 kcal Electronic energy + Delta-G solvation = -30677.232608 eV Core-core repulsion = 26707.397113 eV Total energy + Delta-G solvation = -3969.835495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.14743 -41.02988 -40.09358 -36.82193 -35.83261 -35.11141 -34.87359 -33.73815 -32.54540 -31.11744 -29.26655 -28.11180 -27.33359 -26.33593 -25.03842 -24.65926 -24.00911 -23.20408 -21.70914 -20.83553 -19.93416 -18.95267 -18.68737 -18.28494 -17.71345 -17.28695 -16.91023 -16.71307 -15.73848 -15.64058 -15.52876 -15.37024 -15.32365 -15.00913 -14.83420 -14.55297 -14.35151 -14.20177 -14.09660 -13.48756 -13.42148 -13.16631 -12.95695 -12.85240 -12.83030 -12.80993 -12.44694 -12.38374 -12.25596 -12.16607 -11.89521 -11.83618 -11.63763 -11.51426 -11.42165 -11.38021 -11.09446 -11.02868 -10.61493 -10.44832 -10.03581 -8.78771 -8.12349 -5.46757 0.11420 0.68283 1.26190 1.37602 1.43891 1.89523 2.07567 2.22803 2.41537 2.95410 3.08654 3.28773 3.53129 3.82808 3.88415 3.93373 4.02914 4.13375 4.19205 4.20754 4.31381 4.36641 4.38294 4.46541 4.50921 4.62780 4.67790 4.74564 4.80300 4.85249 4.91358 4.94421 5.00153 5.00661 5.06247 5.07074 5.08130 5.15464 5.16370 5.25348 5.36294 5.40755 5.41872 5.48430 5.52724 5.72327 5.92940 6.21539 6.39836 6.94001 6.97300 7.12165 7.65419 8.06418 9.06865 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003668 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.675295 B = 7630.856437 C = 8657.339486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.021 4.021 4 C -0.193 4.193 5 C -0.047 4.047 6 C 0.588 3.412 7 O -0.569 6.569 8 N -0.679 5.679 9 C 0.136 3.864 10 C 0.161 3.839 11 H 0.048 0.952 12 C -0.125 4.125 13 C -0.091 4.091 14 C -0.084 4.084 15 C -0.135 4.135 16 C -0.121 4.121 17 C 0.134 3.866 18 N -0.611 5.611 19 C -0.222 4.222 20 H 0.056 0.944 21 C -0.022 4.022 22 N -0.954 5.954 23 Si 0.932 3.068 24 H -0.281 1.281 25 H -0.322 1.322 26 H -0.260 1.260 27 N -0.353 5.353 28 O 0.123 5.877 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.195 0.805 35 H 0.410 0.590 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.025 0.975 49 H 0.042 0.958 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 1.234 2.638 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 C -0.085 4.085 4 C -0.216 4.216 5 C -0.205 4.205 6 C 0.373 3.627 7 O -0.449 6.449 8 N -0.327 5.327 9 C 0.013 3.987 10 C 0.056 3.944 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.129 4.129 14 C -0.085 4.085 15 C -0.193 4.193 16 C -0.179 4.179 17 C 0.009 3.991 18 N -0.336 5.336 19 C -0.351 4.351 20 H 0.074 0.926 21 C -0.217 4.217 22 N -0.601 5.601 23 Si 0.763 3.237 24 H -0.208 1.208 25 H -0.252 1.252 26 H -0.185 1.185 27 N -0.052 5.052 28 O 0.045 5.955 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.213 0.787 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.060 0.940 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.705 2.054 2.435 12.131 hybrid contribution 0.600 -0.526 -0.857 1.171 sum -11.105 1.528 1.577 11.320 Atomic orbital electron populations 1.21808 0.92301 1.04068 1.02387 1.20444 0.97362 0.83101 1.06776 1.25343 1.00511 0.98447 0.84152 1.22637 1.05467 0.90791 1.02673 1.23607 1.07454 0.98924 0.90478 1.17119 0.77567 0.81896 0.86143 1.90682 1.57396 1.83464 1.13367 1.45915 1.62651 1.12784 1.11360 1.21450 0.99022 0.83946 0.94324 1.20981 0.89550 0.92682 0.91200 0.93405 1.21954 1.01559 0.94706 0.98152 1.21418 0.96132 0.97614 0.97697 1.21010 0.96336 0.94890 0.96277 1.21789 1.00449 0.98191 0.98840 1.21659 0.96973 1.00653 0.98580 1.21457 0.95177 0.90453 0.91982 1.44466 1.35449 1.06877 1.46855 1.18645 1.33711 0.88338 0.94441 0.92604 1.25776 0.99458 0.96182 1.00276 1.69936 1.36850 1.23444 1.29831 0.86155 0.79232 0.76008 0.82334 1.20817 1.25180 1.18457 1.74245 1.14379 1.00432 1.16161 1.84743 1.59373 1.16870 1.34495 0.92362 0.92818 0.88791 0.87652 0.86133 0.78749 0.75336 0.93452 0.89505 0.89270 0.92101 0.91733 0.89952 0.90546 0.94023 0.92237 0.93643 0.95427 0.91451 0.95667 0.93997 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.90 71.98 0.71 -1.00 16 2 C -0.04 -0.55 6.50 29.85 0.19 -0.36 16 3 C -0.02 -0.55 6.73 25.01 0.17 -0.38 16 4 C -0.19 -5.92 10.92 22.60 0.25 -5.67 16 5 C -0.05 -1.86 7.19 42.96 0.31 -1.55 16 6 C 0.59 25.66 7.85 86.93 0.68 26.34 16 7 O -0.57 -26.27 16.95 -3.69 -0.06 -26.33 16 8 N -0.68 -28.86 3.86 -465.50 -1.80 -30.65 16 9 C 0.14 5.15 4.43 86.38 0.38 5.53 16 10 C 0.16 5.72 3.00 44.97 0.14 5.85 16 11 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 12 C -0.12 -3.48 5.03 30.67 0.15 -3.33 16 13 C -0.09 -2.34 4.71 30.62 0.14 -2.19 16 14 C -0.08 -2.62 0.77 -52.11 -0.04 -2.66 16 15 C -0.13 -3.51 8.48 71.98 0.61 -2.90 16 16 C -0.12 -4.04 7.99 71.98 0.57 -3.46 16 17 C 0.13 5.45 2.87 86.36 0.25 5.70 16 18 N -0.61 -26.71 2.16 -675.21 -1.46 -28.16 16 19 C -0.22 -11.86 7.45 84.03 0.63 -11.23 16 20 H 0.06 3.38 6.06 -2.91 -0.02 3.36 16 21 C -0.02 -1.26 5.26 84.86 0.45 -0.82 16 22 N -0.95 -60.28 13.97 21.65 0.30 -59.98 16 23 Si 0.93 47.13 24.34 68.60 1.67 48.80 16 24 H -0.28 -13.67 6.57 99.48 0.65 -13.02 16 25 H -0.32 -17.07 7.11 99.48 0.71 -16.36 16 26 H -0.26 -12.47 6.72 99.48 0.67 -11.80 16 27 N -0.35 -14.19 11.84 -49.52 -0.59 -14.77 16 28 O 0.12 4.07 11.18 71.87 0.80 4.87 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.41 18.54 7.19 -92.71 -0.67 17.87 16 36 H 0.05 2.04 7.39 -2.39 -0.02 2.03 16 37 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.86 6.34 -2.39 -0.02 1.84 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.73 5.98 -2.38 -0.01 1.71 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 48 H 0.03 1.02 7.04 -2.39 -0.02 1.00 16 49 H 0.04 1.96 4.73 -2.39 -0.01 1.95 16 50 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -73.55 386.98 4.65 -68.90 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.18 Total: 29.47 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.59 Total: 7.86 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -3.54 Total: -133.57 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.74 Total: -21.46 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.67 Total: 48.80 kcal Total: -73.55 4.65 -68.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089727113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.007 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds