Wall clock time and date at job start Tue Mar 31 2020 18:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30259 * 125.62167 * 2 1 4 4 C 1.34482 * 108.69845 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.66846 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.43997 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47089 * 90.02602 * 6 5 4 8 8 O 1.21280 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99886 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99679 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46845 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.58414 * 59.61120 * 11 10 9 13 13 C 1.53189 * 109.58696 * 179.89231 * 11 10 9 14 14 C 1.53037 * 109.31471 * 174.42497 * 13 11 10 15 15 C 1.53045 * 109.53524 * 298.63698 * 14 13 11 16 16 C 1.53000 * 109.49581 * 181.31640 * 15 14 13 17 17 C 1.53006 * 109.49677 * 301.41128 * 15 14 13 18 18 C 1.53193 * 109.31294 * 61.36269 * 15 14 13 19 19 N 1.46921 * 108.77890 * 305.36526 * 18 15 14 20 20 C 1.36932 * 120.63255 * 233.60987 * 19 18 15 21 21 H 1.08007 * 120.00421 * 148.31642 * 20 19 18 22 22 C 1.38814 * 119.99903 * 328.31609 * 20 19 18 23 23 N 1.31611 * 120.00166 * 345.42898 * 22 20 19 24 24 Si 1.86806 * 120.00028 * 165.42697 * 22 20 19 25 25 H 1.48504 * 109.46864 * 59.99837 * 24 22 20 26 26 H 1.48496 * 109.47087 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47185 * 300.00540 * 24 22 20 28 28 O 1.33967 * 125.61574 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46907 * 269.98192 * 1 2 3 30 30 H 1.08999 * 109.46832 * 29.97687 * 1 2 3 31 31 H 1.08998 * 109.47662 * 149.97809 * 1 2 3 32 32 H 1.07998 * 126.16236 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47174 * 210.02555 * 6 5 4 34 34 H 1.08993 * 109.47138 * 330.02821 * 6 5 4 35 35 H 0.96999 * 119.99881 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46877 * 299.99591 * 10 9 7 37 37 H 1.08993 * 109.47164 * 60.00090 * 10 9 7 38 38 H 1.09003 * 109.49494 * 294.37655 * 13 11 10 39 39 H 1.09002 * 109.49736 * 54.47190 * 13 11 10 40 40 H 1.08997 * 109.46119 * 58.64992 * 14 13 11 41 41 H 1.09001 * 109.46058 * 178.61813 * 14 13 11 42 42 H 1.09001 * 109.47034 * 60.00155 * 16 15 14 43 43 H 1.09001 * 109.46754 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.47471 * 299.99696 * 16 15 14 45 45 H 1.09003 * 109.46840 * 60.00199 * 17 15 14 46 46 H 1.09000 * 109.47062 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.46825 * 300.00356 * 17 15 14 48 48 H 1.09002 * 109.58314 * 65.15750 * 18 15 14 49 49 H 1.09007 * 109.58274 * 185.43297 * 18 15 14 50 50 H 0.97001 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6758 -0.0004 6 6 4.7936 -1.5551 -0.0003 7 6 5.2013 -1.8485 1.4206 8 8 4.5608 -1.3892 2.3424 9 7 6.2771 -2.6221 1.6669 10 6 6.6730 -2.9077 3.0482 11 6 7.9149 -3.8014 3.0483 12 1 8.7291 -3.2956 2.5292 13 6 8.3329 -4.0996 4.4916 14 6 9.4879 -5.1036 4.4869 15 6 9.0272 -6.4106 3.8375 16 6 10.1725 -7.4248 3.8628 17 6 7.8311 -6.9707 4.6099 18 6 8.6171 -6.1385 2.3868 19 7 7.6091 -5.0698 2.3728 20 6 6.4073 -5.2523 1.7422 21 1 5.5204 -4.7642 2.1185 22 6 6.3291 -6.0648 0.6194 23 7 7.4274 -6.4265 -0.0090 24 14 4.6647 -6.6449 0.0005 25 1 3.8290 -5.4681 -0.3492 26 1 4.8527 -7.4943 -1.2030 27 1 3.9893 -7.4337 1.0620 28 8 2.2871 -1.0891 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 4.4157 1.3161 -0.0003 33 1 4.5696 -2.4897 -0.5143 34 1 5.6081 -1.0442 -0.5137 35 1 6.7887 -2.9903 0.9297 36 1 6.8974 -1.9732 3.5625 37 1 5.8583 -3.4184 3.5615 38 1 8.6546 -3.1772 4.9751 39 1 7.4873 -4.5204 5.0357 40 1 10.3242 -4.6924 3.9216 41 1 9.8035 -5.2989 5.5118 42 1 10.4658 -7.6159 4.8951 43 1 9.8438 -8.3556 3.4006 44 1 11.0236 -7.0256 3.3112 45 1 7.0152 -6.2481 4.5901 46 1 7.5030 -7.9013 4.1468 47 1 8.1226 -7.1614 5.6427 48 1 9.4895 -5.8257 1.8130 49 1 8.1980 -7.0448 1.9495 50 1 7.3728 -6.9945 -0.7934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099110483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:27 Heat of formation + Delta-G solvation = -4.528166 kcal Electronic energy + Delta-G solvation = -30405.680959 eV Core-core repulsion = 26434.863964 eV Total energy + Delta-G solvation = -3970.816996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19124 -39.38443 -38.43724 -35.15049 -34.60889 -33.24834 -33.03649 -32.17909 -30.41319 -30.05267 -27.57827 -26.64120 -25.76313 -25.52513 -23.40501 -22.34224 -22.15808 -21.06219 -20.16816 -19.75091 -17.94789 -17.25885 -16.85659 -16.45677 -15.86356 -15.71004 -15.42292 -14.81524 -14.26033 -14.10954 -13.99480 -13.86218 -13.73845 -13.38164 -13.31881 -13.11143 -12.90990 -12.86982 -12.59579 -12.50857 -12.21130 -11.98576 -11.62044 -11.39953 -11.32784 -11.18395 -11.13353 -10.89625 -10.82989 -10.66549 -10.46694 -10.44566 -10.16303 -10.12439 -9.83710 -9.58162 -9.44832 -9.29552 -8.63404 -8.52210 -8.29598 -6.69293 -5.90070 -3.36499 1.55013 2.70237 2.80121 3.08605 3.27968 3.35338 3.39362 3.83600 4.13239 4.37281 4.75701 5.06952 5.11982 5.15810 5.24496 5.26594 5.29482 5.40743 5.41886 5.45631 5.48527 5.57359 5.58973 5.72595 5.83797 5.93106 5.99258 6.07554 6.14029 6.16362 6.20679 6.29779 6.33574 6.42034 6.43574 6.44608 6.45204 6.49509 6.62446 6.87114 6.90174 6.97679 7.08798 7.11442 7.33603 7.60252 7.73664 7.82834 8.15567 8.35225 8.76234 9.10577 9.72142 10.31100 11.16355 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.003400 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.007692 B = 8233.167077 C = 9354.477191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.180 3.820 3 N -0.485 5.485 4 C -0.034 4.034 5 C -0.011 4.011 6 C -0.061 4.061 7 C 0.510 3.490 8 O -0.556 6.556 9 N -0.689 5.689 10 C 0.136 3.864 11 C 0.161 3.839 12 H 0.032 0.968 13 C -0.131 4.131 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.133 4.133 17 C -0.124 4.124 18 C 0.188 3.812 19 N -0.584 5.584 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.012 3.988 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.284 1.284 28 O -0.195 6.195 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.181 0.819 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.031 0.969 48 H 0.018 0.982 49 H 0.083 0.917 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 6.617 1.317 6.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.026 4.026 3 N -0.215 5.215 4 C -0.173 4.173 5 C -0.065 4.065 6 C -0.101 4.101 7 C 0.294 3.706 8 O -0.436 6.436 9 N -0.340 5.340 10 C 0.012 3.988 11 C 0.054 3.946 12 H 0.049 0.951 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.191 4.191 17 C -0.182 4.182 18 C 0.063 3.937 19 N -0.308 5.308 20 C -0.381 4.381 21 H 0.085 0.915 22 C -0.188 4.188 23 N -0.540 5.540 24 Si 0.719 3.281 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.210 1.210 28 O -0.082 6.082 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.198 0.802 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.036 0.964 49 H 0.101 0.899 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.486 7.391 1.800 8.003 hybrid contribution -0.190 -1.407 -0.689 1.578 sum -2.676 5.984 1.111 6.649 Atomic orbital electron populations 1.20204 0.81621 1.04766 1.04573 1.26165 0.96382 0.78810 1.01275 1.70374 1.02089 1.30329 1.18723 1.22899 0.94995 0.92734 1.06631 1.22614 0.83149 0.94788 1.05909 1.20109 0.91790 1.00863 0.97375 1.20097 0.81139 0.79255 0.90073 1.90684 1.53742 1.53124 1.46007 1.45923 1.29165 1.48817 1.10124 1.21294 0.97551 0.97387 0.82592 1.20724 0.93655 0.88042 0.92155 0.95084 1.22010 0.98817 0.98078 0.98113 1.21406 0.97279 0.95625 0.98991 1.21247 0.94581 0.93751 1.00119 1.21759 0.98165 0.99118 1.00095 1.21704 0.98451 1.00825 0.97188 1.20776 0.90930 0.93214 0.88807 1.44007 1.16246 1.08420 1.62092 1.19094 0.86001 1.27929 1.05059 0.91486 1.25044 0.96154 1.01626 0.95966 1.69988 1.25977 1.38362 1.19689 0.86587 0.84408 0.78965 0.78127 1.20844 1.21643 1.21030 1.84378 1.16655 1.37635 1.69514 0.89077 0.88343 0.89514 0.80162 0.86618 0.85750 0.74596 0.92701 0.91633 0.93134 0.91647 0.92923 0.93643 0.93960 0.93061 0.93318 0.91600 0.93664 0.95037 0.96422 0.89890 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.50 10.51 36.00 0.38 -0.12 16 2 C 0.18 2.66 8.34 -12.95 -0.11 2.55 16 3 N -0.48 -7.76 11.29 -11.10 -0.13 -7.89 16 4 C -0.03 -0.52 11.80 -17.77 -0.21 -0.73 16 5 C -0.01 -0.18 5.88 -35.69 -0.21 -0.39 16 6 C -0.06 -0.90 6.25 -29.03 -0.18 -1.08 16 7 C 0.51 9.18 7.82 -10.98 -0.09 9.09 16 8 O -0.56 -11.95 16.03 5.56 0.09 -11.86 16 9 N -0.69 -12.26 3.88 -60.29 -0.23 -12.50 16 10 C 0.14 2.44 4.43 -4.04 -0.02 2.42 16 11 C 0.16 2.92 3.00 -67.60 -0.20 2.72 16 12 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.13 -2.09 5.03 -26.61 -0.13 -2.22 16 14 C -0.10 -1.50 4.71 -26.69 -0.13 -1.62 16 15 C -0.10 -1.65 0.77 -154.38 -0.12 -1.77 16 16 C -0.13 -2.04 8.48 37.16 0.32 -1.73 16 17 C -0.12 -2.17 7.99 37.16 0.30 -1.87 16 18 C 0.19 3.98 3.94 -3.71 -0.01 3.97 16 19 N -0.58 -12.39 2.40 -164.77 -0.40 -12.79 16 20 C -0.25 -5.88 6.98 -15.06 -0.11 -5.98 16 21 H 0.07 1.64 5.90 -52.48 -0.31 1.33 16 22 C 0.01 0.29 4.95 -17.43 -0.09 0.20 16 23 N -0.90 -23.13 11.32 55.49 0.63 -22.50 16 24 Si 0.89 20.34 29.58 -169.99 -5.03 15.32 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 O -0.20 -3.32 10.78 5.36 0.06 -3.27 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.42 7.53 7.44 -40.82 -0.30 7.23 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.32 7.38 -51.93 -0.38 0.93 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.10 6.34 -51.93 -0.33 0.77 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 2.02 6.27 -51.92 -0.33 1.69 16 50 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -29.99 393.43 -7.97 -37.96 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.28 Total: 8.16 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.61 Total: 3.44 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.13 Total: -55.68 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.15 Total: -15.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.99 -7.97 -37.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099110483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.436 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds