Wall clock time and date at job start Tue Mar 31 2020 18:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30259 * 125.62167 * 2 1 4 4 C 1.34482 * 108.69845 * 180.02562 * 3 2 1 5 5 C 1.34326 * 107.66846 * 359.97438 * 4 3 2 6 6 C 1.50705 * 126.43997 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47089 * 90.02602 * 6 5 4 8 8 O 1.21280 * 120.00085 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99886 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99679 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46845 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.58414 * 59.61120 * 11 10 9 13 13 C 1.53189 * 109.58696 * 179.89231 * 11 10 9 14 14 C 1.53037 * 109.31471 * 174.42497 * 13 11 10 15 15 C 1.53045 * 109.53524 * 298.63698 * 14 13 11 16 16 C 1.53000 * 109.49581 * 181.31640 * 15 14 13 17 17 C 1.53006 * 109.49677 * 301.41128 * 15 14 13 18 18 C 1.53193 * 109.31294 * 61.36269 * 15 14 13 19 19 N 1.46921 * 108.77890 * 305.36526 * 18 15 14 20 20 C 1.36932 * 120.63255 * 233.60987 * 19 18 15 21 21 H 1.08007 * 120.00421 * 148.31642 * 20 19 18 22 22 C 1.38814 * 119.99903 * 328.31609 * 20 19 18 23 23 N 1.31611 * 120.00166 * 345.42898 * 22 20 19 24 24 Si 1.86806 * 120.00028 * 165.42697 * 22 20 19 25 25 H 1.48504 * 109.46864 * 59.99837 * 24 22 20 26 26 H 1.48496 * 109.47087 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47185 * 300.00540 * 24 22 20 28 28 O 1.33967 * 125.61574 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46907 * 269.98192 * 1 2 3 30 30 H 1.08999 * 109.46832 * 29.97687 * 1 2 3 31 31 H 1.08998 * 109.47662 * 149.97809 * 1 2 3 32 32 H 1.07998 * 126.16236 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47174 * 210.02555 * 6 5 4 34 34 H 1.08993 * 109.47138 * 330.02821 * 6 5 4 35 35 H 0.96999 * 119.99881 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46877 * 299.99591 * 10 9 7 37 37 H 1.08993 * 109.47164 * 60.00090 * 10 9 7 38 38 H 1.09003 * 109.49494 * 294.37655 * 13 11 10 39 39 H 1.09002 * 109.49736 * 54.47190 * 13 11 10 40 40 H 1.08997 * 109.46119 * 58.64992 * 14 13 11 41 41 H 1.09001 * 109.46058 * 178.61813 * 14 13 11 42 42 H 1.09001 * 109.47034 * 60.00155 * 16 15 14 43 43 H 1.09001 * 109.46754 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.47471 * 299.99696 * 16 15 14 45 45 H 1.09003 * 109.46840 * 60.00199 * 17 15 14 46 46 H 1.09000 * 109.47062 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.46825 * 300.00356 * 17 15 14 48 48 H 1.09002 * 109.58314 * 65.15750 * 18 15 14 49 49 H 1.09007 * 109.58274 * 185.43297 * 18 15 14 50 50 H 0.97001 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 3.5697 -0.6758 -0.0004 6 6 4.7936 -1.5551 -0.0003 7 6 5.2013 -1.8485 1.4206 8 8 4.5608 -1.3892 2.3424 9 7 6.2771 -2.6221 1.6669 10 6 6.6730 -2.9077 3.0482 11 6 7.9149 -3.8014 3.0483 12 1 8.7291 -3.2956 2.5292 13 6 8.3329 -4.0996 4.4916 14 6 9.4879 -5.1036 4.4869 15 6 9.0272 -6.4106 3.8375 16 6 10.1725 -7.4248 3.8628 17 6 7.8311 -6.9707 4.6099 18 6 8.6171 -6.1385 2.3868 19 7 7.6091 -5.0698 2.3728 20 6 6.4073 -5.2523 1.7422 21 1 5.5204 -4.7642 2.1185 22 6 6.3291 -6.0648 0.6194 23 7 7.4274 -6.4265 -0.0090 24 14 4.6647 -6.6449 0.0005 25 1 3.8290 -5.4681 -0.3492 26 1 4.8527 -7.4943 -1.2030 27 1 3.9893 -7.4337 1.0620 28 8 2.2871 -1.0891 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 4.4157 1.3161 -0.0003 33 1 4.5696 -2.4897 -0.5143 34 1 5.6081 -1.0442 -0.5137 35 1 6.7887 -2.9903 0.9297 36 1 6.8974 -1.9732 3.5625 37 1 5.8583 -3.4184 3.5615 38 1 8.6546 -3.1772 4.9751 39 1 7.4873 -4.5204 5.0357 40 1 10.3242 -4.6924 3.9216 41 1 9.8035 -5.2989 5.5118 42 1 10.4658 -7.6159 4.8951 43 1 9.8438 -8.3556 3.4006 44 1 11.0236 -7.0256 3.3112 45 1 7.0152 -6.2481 4.5901 46 1 7.5030 -7.9013 4.1468 47 1 8.1226 -7.1614 5.6427 48 1 9.4895 -5.8257 1.8130 49 1 8.1980 -7.0448 1.9495 50 1 7.3728 -6.9945 -0.7934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099110483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:26 Heat of formation + Delta-G solvation = -23.664817 kcal Electronic energy + Delta-G solvation = -30406.510787 eV Core-core repulsion = 26434.863964 eV Total energy + Delta-G solvation = -3971.646823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.35196 -40.87040 -39.91302 -36.63990 -35.78964 -34.97939 -34.22567 -33.59219 -31.74059 -31.42471 -28.91510 -28.01682 -27.30018 -26.90818 -24.86123 -23.85225 -23.36140 -22.23083 -21.70900 -21.15825 -19.45904 -18.69055 -18.03959 -17.92089 -17.31854 -17.21783 -16.80420 -16.29732 -15.87533 -15.46836 -15.36043 -15.28023 -14.96283 -14.77984 -14.70511 -14.42199 -14.04561 -13.99045 -13.83753 -13.74266 -13.39474 -13.20874 -13.03526 -12.98837 -12.77233 -12.72643 -12.49754 -12.48964 -12.31055 -12.23588 -12.11587 -11.86054 -11.64144 -11.61938 -11.25749 -11.08008 -10.90645 -10.82863 -10.47123 -9.85299 -9.67597 -8.49007 -7.79428 -5.25419 0.38650 1.40377 1.47257 1.50218 1.59037 1.65060 1.70555 2.46646 2.52443 3.14181 3.35075 3.61093 3.62086 3.95874 4.01366 4.04045 4.05377 4.12658 4.21324 4.34124 4.37052 4.44068 4.54578 4.59496 4.62341 4.66201 4.70116 4.77181 4.87790 4.94175 4.95852 4.99861 5.02571 5.06752 5.11129 5.14914 5.17904 5.26767 5.38106 5.40492 5.49634 5.54841 5.59793 5.66311 5.74360 5.83127 5.90014 6.48272 6.67638 6.69858 7.23595 7.31734 7.93155 8.47259 9.24077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.003400 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.007692 B = 8233.167077 C = 9354.477191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.179 3.821 3 N -0.510 5.510 4 C -0.035 4.035 5 C -0.038 4.038 6 C -0.053 4.053 7 C 0.509 3.491 8 O -0.593 6.593 9 N -0.688 5.688 10 C 0.141 3.859 11 C 0.162 3.838 12 H 0.035 0.965 13 C -0.126 4.126 14 C -0.091 4.091 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.118 4.118 18 C 0.197 3.803 19 N -0.594 5.594 20 C -0.230 4.230 21 H 0.057 0.943 22 C -0.025 4.025 23 N -0.919 5.919 24 Si 0.928 3.072 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.295 1.295 28 O -0.219 6.219 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.204 0.796 33 H 0.114 0.886 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.028 0.972 47 H 0.058 0.942 48 H -0.003 1.003 49 H 0.046 0.954 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 7.684 2.422 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.027 4.027 3 N -0.241 5.241 4 C -0.173 4.173 5 C -0.091 4.091 6 C -0.092 4.092 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.338 5.338 10 C 0.017 3.983 11 C 0.056 3.944 12 H 0.052 0.948 13 C -0.165 4.165 14 C -0.128 4.128 15 C -0.094 4.094 16 C -0.186 4.186 17 C -0.175 4.175 18 C 0.071 3.929 19 N -0.318 5.318 20 C -0.360 4.360 21 H 0.074 0.926 22 C -0.222 4.222 23 N -0.565 5.565 24 Si 0.759 3.241 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.222 1.222 28 O -0.107 6.107 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.221 0.779 33 H 0.132 0.868 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.015 0.985 49 H 0.064 0.936 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.982 8.471 2.914 9.174 hybrid contribution -0.391 -1.693 -0.976 1.993 sum -2.373 6.778 1.937 7.438 Atomic orbital electron populations 1.20529 0.78179 1.06597 1.05914 1.27324 0.98166 0.78057 0.99175 1.70414 1.02569 1.30947 1.20122 1.23347 0.95666 0.92879 1.05381 1.22879 0.83286 0.95392 1.07517 1.20151 0.92682 1.01230 0.95166 1.20631 0.80344 0.78328 0.91162 1.90659 1.54763 1.54562 1.47532 1.45941 1.29227 1.48617 1.10018 1.21238 0.96562 0.97799 0.82725 1.20853 0.93663 0.86493 0.93362 0.94790 1.21962 0.98797 0.99550 0.96195 1.21383 0.97009 0.94139 1.00292 1.21163 0.95344 0.95636 0.97286 1.21707 0.97288 0.97953 1.01686 1.21625 0.97832 0.99374 0.98655 1.20557 0.89660 0.91505 0.91139 1.44145 1.15583 1.09975 1.62090 1.19044 0.86585 1.26353 1.04058 0.92554 1.25368 0.97395 1.02711 0.96692 1.70083 1.26832 1.39514 1.20105 0.85972 0.82673 0.78382 0.77105 1.20466 1.22242 1.22216 1.84377 1.17372 1.38861 1.70094 0.87777 0.86360 0.87799 0.77869 0.86793 0.81841 0.74713 0.91069 0.94063 0.90330 0.92385 0.92597 0.91000 0.91417 0.94035 0.92949 0.93580 0.95295 0.92293 0.98493 0.93589 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.18 5.14 8.34 88.34 0.74 5.88 16 3 N -0.51 -15.90 11.29 -303.83 -3.43 -19.33 16 4 C -0.03 -1.04 11.80 83.39 0.98 -0.05 16 5 C -0.04 -1.21 5.88 24.79 0.15 -1.06 16 6 C -0.05 -1.50 6.25 29.10 0.18 -1.32 16 7 C 0.51 18.17 7.82 87.66 0.69 18.85 16 8 O -0.59 -25.54 16.03 -3.03 -0.05 -25.59 16 9 N -0.69 -24.25 3.88 -463.05 -1.80 -26.05 16 10 C 0.14 4.98 4.43 86.38 0.38 5.36 16 11 C 0.16 5.70 3.00 44.97 0.14 5.83 16 12 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 13 C -0.13 -3.70 5.03 30.67 0.15 -3.55 16 14 C -0.09 -2.57 4.71 30.62 0.14 -2.42 16 15 C -0.09 -3.07 0.77 -52.10 -0.04 -3.11 16 16 C -0.13 -3.68 8.48 71.98 0.61 -3.07 16 17 C -0.12 -3.95 7.99 71.98 0.57 -3.38 16 18 C 0.20 8.40 3.94 86.36 0.34 8.74 16 19 N -0.59 -25.29 2.40 -675.22 -1.62 -26.91 16 20 C -0.23 -10.91 6.98 84.03 0.59 -10.33 16 21 H 0.06 2.81 5.90 -2.91 -0.02 2.79 16 22 C -0.02 -1.24 4.95 84.86 0.42 -0.82 16 23 N -0.92 -48.67 11.32 21.65 0.25 -48.43 16 24 Si 0.93 42.63 29.58 68.60 2.03 44.66 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 28 O -0.22 -7.42 10.78 -3.73 -0.04 -7.46 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.16 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.42 14.91 7.44 -92.71 -0.69 14.22 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.66 7.38 -2.39 -0.02 1.65 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.82 6.34 -2.39 -0.02 1.81 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.72 5.97 -2.39 -0.01 1.70 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.05 2.30 6.27 -2.38 -0.01 2.29 16 50 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -66.60 393.43 2.37 -64.23 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.25 Total: 29.50 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.79 Total: 15.37 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.61 Total: -120.72 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.09 Total: -33.05 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.60 2.37 -64.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099110483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.566 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds