Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.50698 * 112.85092 * 297.41831 * 3 2 1 5 5 O 1.21281 * 119.99868 * 124.42819 * 4 3 2 6 6 N 1.34780 * 120.00133 * 304.42502 * 4 3 2 7 7 C 1.46504 * 119.99951 * 175.07704 * 6 4 3 8 8 H 1.08998 * 110.88614 * 322.64911 * 7 6 4 9 9 C 1.54626 * 110.96406 * 86.45733 * 7 6 4 10 10 C 1.51284 * 104.31085 * 142.98365 * 9 7 6 11 11 O 1.21280 * 124.94479 * 163.71739 * 10 9 7 12 12 N 1.34418 * 110.11579 * 343.67686 * 10 9 7 13 13 C 1.46497 * 124.35191 * 179.57500 * 12 10 9 14 14 C 1.53940 * 113.74235 * 38.76470 * 13 12 10 15 15 N 1.47820 * 86.03877 * 222.08617 * 14 13 12 16 16 C 1.36933 * 134.45634 * 204.64455 * 15 14 13 17 17 H 1.08004 * 119.99896 * 184.76637 * 16 15 14 18 18 C 1.38807 * 120.00336 * 4.76771 * 16 15 14 19 19 N 1.31624 * 119.99775 * 5.14200 * 18 16 15 20 20 Si 1.86794 * 120.00284 * 185.14293 * 18 16 15 21 21 H 1.48497 * 109.47167 * 94.99525 * 20 18 16 22 22 H 1.48500 * 109.47578 * 214.99791 * 20 18 16 23 23 H 1.48507 * 109.47211 * 334.99644 * 20 18 16 24 24 C 1.47589 * 91.04682 * 24.54972 * 15 14 13 25 25 C 1.46765 * 111.30086 * 359.59319 * 12 10 9 26 26 C 1.53789 * 113.61230 * 68.61479 * 3 2 1 27 27 C 1.53953 * 87.01986 * 89.22810 * 26 3 2 28 28 C 1.53777 * 113.61740 * 166.21912 * 3 2 1 29 29 H 1.09000 * 109.46846 * 295.28926 * 1 2 3 30 30 H 1.08998 * 109.47254 * 55.28689 * 1 2 3 31 31 H 1.08999 * 109.47129 * 175.29033 * 1 2 3 32 32 H 1.09007 * 109.46686 * 240.00540 * 2 1 3 33 33 H 1.08998 * 109.47409 * 120.00675 * 2 1 3 34 34 H 0.96994 * 119.99564 * 355.08096 * 6 4 3 35 35 H 1.08995 * 110.48973 * 24.23662 * 9 7 6 36 36 H 1.09005 * 110.48802 * 261.71926 * 9 7 6 37 37 H 1.08999 * 112.94437 * 170.36304 * 13 12 10 38 38 H 1.09002 * 113.77005 * 336.34974 * 14 13 12 39 39 H 1.09002 * 113.76848 * 107.75001 * 14 13 12 40 40 H 0.97003 * 119.99571 * 179.97438 * 19 18 16 41 41 H 1.08998 * 113.76130 * 221.15515 * 24 15 14 42 42 H 1.08995 * 113.76699 * 89.75394 * 24 15 14 43 43 H 1.09000 * 110.24760 * 136.01113 * 25 12 10 44 44 H 1.08994 * 110.24804 * 257.92971 * 25 12 10 45 45 H 1.08999 * 113.60806 * 203.75054 * 26 3 2 46 46 H 1.08997 * 113.60842 * 334.64629 * 26 3 2 47 47 H 1.08999 * 113.53888 * 270.81121 * 27 26 3 48 48 H 1.08997 * 113.74094 * 139.94054 * 27 26 3 49 49 H 1.09005 * 113.61204 * 25.35223 * 28 3 2 50 50 H 1.09002 * 113.61713 * 156.25171 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6322 2.2074 -1.2327 5 8 1.0256 3.2520 -1.1251 6 7 1.9416 1.7306 -2.4548 7 6 1.4530 2.4161 -3.6538 8 1 0.4437 2.7975 -3.4993 9 6 2.4154 3.5514 -4.0729 10 6 2.3990 3.5163 -5.5853 11 8 2.7942 4.4088 -6.3052 12 7 1.8836 2.3517 -6.0151 13 6 1.7144 1.9930 -7.4254 14 6 2.8740 2.4555 -8.3260 15 7 1.8293 2.8434 -9.2972 16 6 1.7968 3.0077 -10.6563 17 1 0.9026 3.3802 -11.1340 18 6 2.9130 2.6955 -11.4201 19 7 3.9664 2.1471 -10.8525 20 14 2.9203 3.0537 -13.2533 21 1 3.5606 4.3710 -13.4978 22 1 3.6821 1.9940 -13.9618 23 1 1.5239 3.0808 -13.7580 24 6 0.8355 2.9802 -8.2147 25 6 1.5118 1.4857 -4.8900 26 6 1.7609 2.1945 1.3121 27 6 3.1158 1.6613 1.8121 28 6 3.5355 1.5671 0.3356 29 1 -0.3633 0.4390 0.9292 30 1 -0.3634 0.5852 -0.8447 31 1 -0.3633 -1.0242 -0.0844 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.4878 0.9336 -2.5404 35 1 3.4202 3.3578 -3.6977 36 1 2.0522 4.5129 -3.7098 37 1 1.4376 0.9484 -7.5679 38 1 3.4340 3.2992 -7.9227 39 1 3.5146 1.6431 -8.6692 40 1 4.7463 1.9286 -11.3863 41 1 -0.1483 2.5859 -8.4693 42 1 0.7955 3.9783 -7.7787 43 1 0.5359 1.0339 -5.0682 44 1 2.2647 0.7110 -4.7454 45 1 1.7337 3.2781 1.1969 46 1 0.9063 1.8050 1.8652 47 1 3.0463 0.6936 2.3089 48 1 3.6904 2.3902 2.3836 49 1 4.1116 0.6718 0.1017 50 1 3.9944 2.4789 -0.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108565909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = 11.793278 kcal Electronic energy + Delta-G solvation = -29599.261571 eV Core-core repulsion = 25629.152327 eV Total energy + Delta-G solvation = -3970.109245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21710 -40.30998 -38.25105 -37.16316 -36.31559 -34.17539 -32.83358 -32.12801 -30.36575 -27.70243 -27.39069 -26.39365 -25.99104 -24.71679 -23.51448 -23.28248 -22.14270 -21.12342 -20.43840 -18.97957 -18.29340 -17.43855 -16.98991 -16.71135 -16.25213 -15.88431 -15.52995 -15.43947 -14.80946 -14.60913 -14.43467 -14.20842 -13.88562 -13.75242 -13.52322 -13.44964 -13.20261 -13.06675 -12.77841 -12.42057 -12.16082 -12.04668 -11.84947 -11.81710 -11.69292 -11.57401 -11.43896 -11.38614 -11.13114 -10.83248 -10.78502 -10.68790 -10.63977 -10.19253 -9.97811 -9.85678 -9.65495 -9.49560 -9.12405 -8.67367 -8.17797 -6.79696 -5.71301 -3.04555 2.33284 2.73282 2.93661 3.31319 3.43073 3.48652 3.49528 3.94414 4.02941 4.18651 4.29015 4.36415 4.46442 4.51858 4.58623 4.79875 4.82507 4.89792 4.93011 5.01248 5.24361 5.24758 5.31898 5.35467 5.38210 5.38527 5.43938 5.47993 5.54863 5.55385 5.65071 5.66372 5.71505 5.72528 5.77858 5.86934 5.87703 6.00136 6.18029 6.30679 6.53365 6.59018 6.87260 7.18289 7.32529 7.50134 7.59277 7.63066 7.94353 8.02918 8.55974 9.08583 9.75270 10.64403 11.44593 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.002160 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.630584 B =12962.763973 C =13085.848971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.108 4.108 4 C 0.534 3.466 5 O -0.532 6.532 6 N -0.719 5.719 7 C 0.136 3.864 8 H 0.108 0.892 9 C -0.166 4.166 10 C 0.515 3.485 11 O -0.509 6.509 12 N -0.606 5.606 13 C 0.100 3.900 14 C 0.145 3.855 15 N -0.605 5.605 16 C -0.218 4.218 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.112 3.888 25 C 0.099 3.901 26 C -0.113 4.113 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.402 0.598 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -8.416 28.296 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.111 4.111 4 C 0.320 3.680 5 O -0.408 6.408 6 N -0.371 5.371 7 C 0.030 3.970 8 H 0.126 0.874 9 C -0.208 4.208 10 C 0.301 3.699 11 O -0.383 6.383 12 N -0.341 5.341 13 C -0.002 4.002 14 C 0.019 3.981 15 N -0.331 5.331 16 C -0.346 4.346 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.016 4.016 25 C -0.025 4.025 26 C -0.151 4.151 27 C -0.179 4.179 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.238 0.762 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.886 -7.224 27.541 28.736 hybrid contribution 0.343 -0.184 -1.077 1.145 sum -3.543 -7.409 26.464 27.709 Atomic orbital electron populations 1.21779 0.95025 1.01948 1.02434 1.21312 0.96567 0.92496 1.02973 1.22253 0.98459 0.96825 0.93556 1.20399 0.78281 0.85255 0.84069 1.90715 1.40403 1.23046 1.86634 1.45954 1.54797 1.31328 1.05046 1.21846 0.98969 0.92260 0.83904 0.87389 1.22815 1.01976 1.01476 0.94508 1.20619 0.77315 0.82049 0.89887 1.90783 1.46881 1.39261 1.61392 1.48517 1.62356 1.16930 1.06306 1.24075 1.01701 0.99206 0.75251 1.22894 0.91483 0.98861 0.84828 1.45648 1.06811 1.80032 1.00615 1.18994 0.99068 1.36996 0.79514 0.90251 1.24793 0.96373 1.01217 0.98186 1.69829 1.05384 1.46801 1.34565 0.86073 0.77375 0.77544 0.84615 1.21645 1.21706 1.20553 1.22942 0.93615 0.96490 0.88507 1.22247 1.01713 0.93214 0.85369 1.22894 0.97642 1.01048 0.93504 1.22861 0.97294 1.01705 0.96002 1.22948 0.93394 1.02982 0.96908 0.92318 0.92583 0.92205 0.91162 0.90593 0.76243 0.87941 0.87907 0.87620 0.92885 0.90384 0.93714 0.93947 0.94150 0.89723 0.90909 0.88845 0.90832 0.89886 0.90981 0.90463 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.63 37.16 0.36 -0.52 16 2 C -0.10 -0.45 5.20 -26.73 -0.14 -0.59 16 3 C -0.11 -0.69 0.79 -154.85 -0.12 -0.81 16 4 C 0.53 4.91 5.85 -10.98 -0.06 4.84 16 5 O -0.53 -7.07 15.76 5.56 0.09 -6.98 16 6 N -0.72 -5.43 5.09 -52.04 -0.26 -5.70 16 7 C 0.14 1.32 3.41 -66.11 -0.23 1.10 16 8 H 0.11 1.15 7.80 -51.93 -0.41 0.75 16 9 C -0.17 -2.06 6.58 -26.74 -0.18 -2.24 16 10 C 0.52 8.87 7.42 -10.86 -0.08 8.79 16 11 O -0.51 -11.47 14.61 5.56 0.08 -11.39 16 12 N -0.61 -9.38 3.15 -166.41 -0.53 -9.91 16 13 C 0.10 1.93 4.81 -70.14 -0.34 1.59 16 14 C 0.15 3.65 7.10 -2.84 -0.02 3.63 16 15 N -0.60 -16.48 3.70 -177.85 -0.66 -17.14 16 16 C -0.22 -6.40 10.69 -15.06 -0.16 -6.56 16 17 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -28.09 11.29 55.49 0.63 -27.47 16 20 Si 0.91 22.85 29.56 -169.99 -5.02 17.83 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.11 2.47 8.44 -2.96 -0.02 2.44 16 25 C 0.10 0.99 7.08 -2.93 -0.02 0.97 16 26 C -0.11 -0.77 6.81 -25.82 -0.18 -0.95 16 27 C -0.14 -0.71 7.74 -25.83 -0.20 -0.91 16 28 C -0.12 -0.68 7.22 -25.92 -0.19 -0.86 16 29 H 0.06 0.34 7.08 -51.93 -0.37 -0.03 16 30 H 0.06 0.41 7.33 -51.93 -0.38 0.03 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.26 7.67 -51.92 -0.40 -0.14 16 33 H 0.08 0.29 7.31 -51.93 -0.38 -0.09 16 34 H 0.40 2.04 7.90 -40.82 -0.32 1.72 16 35 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.05 1.46 5.72 -51.93 -0.30 1.16 16 39 H 0.08 2.12 6.87 -51.93 -0.36 1.76 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.95 7.25 -51.93 -0.38 0.57 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 45 H 0.09 0.81 7.53 -51.93 -0.39 0.42 16 46 H 0.07 0.46 7.01 -51.93 -0.36 0.09 16 47 H 0.08 0.33 7.60 -51.93 -0.39 -0.07 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 50 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -36.82 392.88 -9.61 -46.42 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.18 Total: -1.13 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.67 Total: 9.55 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.82 Total: -60.21 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.82 -9.61 -46.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108565909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.218 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds