Wall clock time and date at job start Tue Mar 31 2020 19:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47234 * 2 1 4 4 C 1.50698 * 112.85092 * 297.41831 * 3 2 1 5 5 O 1.21281 * 119.99868 * 124.42819 * 4 3 2 6 6 N 1.34780 * 120.00133 * 304.42502 * 4 3 2 7 7 C 1.46504 * 119.99951 * 175.07704 * 6 4 3 8 8 H 1.08998 * 110.88614 * 322.64911 * 7 6 4 9 9 C 1.54626 * 110.96406 * 86.45733 * 7 6 4 10 10 C 1.51284 * 104.31085 * 142.98365 * 9 7 6 11 11 O 1.21280 * 124.94479 * 163.71739 * 10 9 7 12 12 N 1.34418 * 110.11579 * 343.67686 * 10 9 7 13 13 C 1.46497 * 124.35191 * 179.57500 * 12 10 9 14 14 C 1.53940 * 113.74235 * 38.76470 * 13 12 10 15 15 N 1.47820 * 86.03877 * 222.08617 * 14 13 12 16 16 C 1.36933 * 134.45634 * 204.64455 * 15 14 13 17 17 H 1.08004 * 119.99896 * 184.76637 * 16 15 14 18 18 C 1.38807 * 120.00336 * 4.76771 * 16 15 14 19 19 N 1.31624 * 119.99775 * 5.14200 * 18 16 15 20 20 Si 1.86794 * 120.00284 * 185.14293 * 18 16 15 21 21 H 1.48497 * 109.47167 * 94.99525 * 20 18 16 22 22 H 1.48500 * 109.47578 * 214.99791 * 20 18 16 23 23 H 1.48507 * 109.47211 * 334.99644 * 20 18 16 24 24 C 1.47589 * 91.04682 * 24.54972 * 15 14 13 25 25 C 1.46765 * 111.30086 * 359.59319 * 12 10 9 26 26 C 1.53789 * 113.61230 * 68.61479 * 3 2 1 27 27 C 1.53953 * 87.01986 * 89.22810 * 26 3 2 28 28 C 1.53777 * 113.61740 * 166.21912 * 3 2 1 29 29 H 1.09000 * 109.46846 * 295.28926 * 1 2 3 30 30 H 1.08998 * 109.47254 * 55.28689 * 1 2 3 31 31 H 1.08999 * 109.47129 * 175.29033 * 1 2 3 32 32 H 1.09007 * 109.46686 * 240.00540 * 2 1 3 33 33 H 1.08998 * 109.47409 * 120.00675 * 2 1 3 34 34 H 0.96994 * 119.99564 * 355.08096 * 6 4 3 35 35 H 1.08995 * 110.48973 * 24.23662 * 9 7 6 36 36 H 1.09005 * 110.48802 * 261.71926 * 9 7 6 37 37 H 1.08999 * 112.94437 * 170.36304 * 13 12 10 38 38 H 1.09002 * 113.77005 * 336.34974 * 14 13 12 39 39 H 1.09002 * 113.76848 * 107.75001 * 14 13 12 40 40 H 0.97003 * 119.99571 * 179.97438 * 19 18 16 41 41 H 1.08998 * 113.76130 * 221.15515 * 24 15 14 42 42 H 1.08995 * 113.76699 * 89.75394 * 24 15 14 43 43 H 1.09000 * 110.24760 * 136.01113 * 25 12 10 44 44 H 1.08994 * 110.24804 * 257.92971 * 25 12 10 45 45 H 1.08999 * 113.60806 * 203.75054 * 26 3 2 46 46 H 1.08997 * 113.60842 * 334.64629 * 26 3 2 47 47 H 1.08999 * 113.53888 * 270.81121 * 27 26 3 48 48 H 1.08997 * 113.74094 * 139.94054 * 27 26 3 49 49 H 1.09005 * 113.61204 * 25.35223 * 28 3 2 50 50 H 1.09002 * 113.61713 * 156.25171 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6322 2.2074 -1.2327 5 8 1.0256 3.2520 -1.1251 6 7 1.9416 1.7306 -2.4548 7 6 1.4530 2.4161 -3.6538 8 1 0.4437 2.7975 -3.4993 9 6 2.4154 3.5514 -4.0729 10 6 2.3990 3.5163 -5.5853 11 8 2.7942 4.4088 -6.3052 12 7 1.8836 2.3517 -6.0151 13 6 1.7144 1.9930 -7.4254 14 6 2.8740 2.4555 -8.3260 15 7 1.8293 2.8434 -9.2972 16 6 1.7968 3.0077 -10.6563 17 1 0.9026 3.3802 -11.1340 18 6 2.9130 2.6955 -11.4201 19 7 3.9664 2.1471 -10.8525 20 14 2.9203 3.0537 -13.2533 21 1 3.5606 4.3710 -13.4978 22 1 3.6821 1.9940 -13.9618 23 1 1.5239 3.0808 -13.7580 24 6 0.8355 2.9802 -8.2147 25 6 1.5118 1.4857 -4.8900 26 6 1.7609 2.1945 1.3121 27 6 3.1158 1.6613 1.8121 28 6 3.5355 1.5671 0.3356 29 1 -0.3633 0.4390 0.9292 30 1 -0.3634 0.5852 -0.8447 31 1 -0.3633 -1.0242 -0.0844 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.4878 0.9336 -2.5404 35 1 3.4202 3.3578 -3.6977 36 1 2.0522 4.5129 -3.7098 37 1 1.4376 0.9484 -7.5679 38 1 3.4340 3.2992 -7.9227 39 1 3.5146 1.6431 -8.6692 40 1 4.7463 1.9286 -11.3863 41 1 -0.1483 2.5859 -8.4693 42 1 0.7955 3.9783 -7.7787 43 1 0.5359 1.0339 -5.0682 44 1 2.2647 0.7110 -4.7454 45 1 1.7337 3.2781 1.1969 46 1 0.9063 1.8050 1.8652 47 1 3.0463 0.6936 2.3089 48 1 3.6904 2.3902 2.3836 49 1 4.1116 0.6718 0.1017 50 1 3.9944 2.4789 -0.0469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108565909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:17 Heat of formation + Delta-G solvation = -14.155573 kcal Electronic energy + Delta-G solvation = -29600.386798 eV Core-core repulsion = 25629.152327 eV Total energy + Delta-G solvation = -3971.234471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05425 -41.41035 -39.23639 -38.66863 -37.52785 -35.28143 -34.19053 -33.21496 -31.64554 -29.23038 -28.63566 -27.12618 -26.62517 -26.46849 -25.23591 -23.85972 -22.92713 -22.15592 -21.85608 -19.87601 -19.50517 -18.81489 -18.01627 -17.88109 -17.64966 -17.02195 -16.47707 -16.41073 -16.28402 -15.75357 -15.51764 -15.37127 -15.04776 -14.81396 -14.65183 -14.49578 -14.23168 -14.01586 -13.63583 -13.53551 -13.46093 -13.30594 -13.25750 -12.84451 -12.78031 -12.60493 -12.56668 -12.29438 -12.26241 -12.13727 -12.04687 -11.89752 -11.82393 -11.54846 -11.22093 -11.11638 -11.07498 -10.74260 -10.51845 -10.10430 -9.59837 -8.94624 -7.93031 -5.29294 1.42123 1.45843 1.54145 1.54816 1.62491 1.85417 2.18750 2.47211 3.23166 3.30220 3.44772 3.46157 3.47259 3.59381 3.76113 3.78593 3.88719 3.94367 3.99607 4.06858 4.23403 4.43912 4.50682 4.52362 4.55290 4.60534 4.62269 4.74477 4.80786 4.84639 4.87488 4.89536 4.90636 4.93439 5.05546 5.11554 5.17471 5.18053 5.23022 5.25092 5.36064 5.41795 5.46651 5.47221 5.57854 5.82130 5.89385 6.22070 6.56023 6.86908 7.19007 7.27210 7.55749 8.51277 9.22579 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030506 B = 0.002160 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.630584 B =12962.763973 C =13085.848971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.103 4.103 4 C 0.532 3.468 5 O -0.579 6.579 6 N -0.703 5.703 7 C 0.151 3.849 8 H 0.102 0.898 9 C -0.153 4.153 10 C 0.504 3.496 11 O -0.573 6.573 12 N -0.604 5.604 13 C 0.138 3.862 14 C 0.141 3.859 15 N -0.635 5.635 16 C -0.237 4.237 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.950 5.950 20 Si 0.984 3.016 21 H -0.293 1.293 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.111 3.889 25 C 0.101 3.899 26 C -0.124 4.124 27 C -0.132 4.132 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.419 0.581 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.021 0.979 39 H 0.052 0.948 40 H 0.249 0.751 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -11.313 29.812 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.129 4.129 3 C -0.106 4.106 4 C 0.320 3.680 5 O -0.457 6.457 6 N -0.356 5.356 7 C 0.044 3.956 8 H 0.120 0.880 9 C -0.195 4.195 10 C 0.293 3.707 11 O -0.452 6.452 12 N -0.337 5.337 13 C 0.035 3.965 14 C 0.015 3.985 15 N -0.362 5.362 16 C -0.366 4.366 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.599 5.599 20 Si 0.811 3.189 21 H -0.220 1.220 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.015 4.015 25 C -0.022 4.022 26 C -0.161 4.161 27 C -0.169 4.169 28 C -0.159 4.159 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.258 0.742 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.581 -10.186 29.119 31.187 hybrid contribution 0.527 0.786 -1.453 1.734 sum -4.054 -9.401 27.666 29.499 Atomic orbital electron populations 1.21785 0.95931 1.02239 1.01309 1.21366 0.95672 0.91130 1.04766 1.22329 0.99249 0.97492 0.91532 1.20969 0.77246 0.84738 0.85062 1.90705 1.42540 1.25204 1.87275 1.45778 1.54487 1.31441 1.03870 1.21590 0.97868 0.91342 0.84752 0.87971 1.22731 1.03609 1.02498 0.90658 1.21443 0.76113 0.81540 0.91637 1.90749 1.49556 1.41562 1.63357 1.48452 1.61557 1.17440 1.06261 1.23385 0.96775 0.99726 0.76638 1.22705 0.92550 0.96983 0.86313 1.46081 1.08891 1.80265 1.00942 1.19410 0.99388 1.36642 0.81130 0.89926 1.25716 0.96086 1.01405 1.02916 1.70026 1.05848 1.47917 1.36074 0.84989 0.78057 0.76812 0.79029 1.22047 1.21349 1.18730 1.23019 0.94391 0.96554 0.87521 1.22586 1.04269 0.92599 0.82715 1.22899 0.99114 0.99644 0.94491 1.22865 0.95645 1.02486 0.95949 1.22949 0.92647 1.03372 0.96947 0.92936 0.94453 0.90998 0.89349 0.88798 0.74211 0.86498 0.88771 0.84398 0.96150 0.92981 0.94155 0.91415 0.95959 0.86906 0.87622 0.91534 0.90494 0.87918 0.91081 0.88202 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.63 71.98 0.69 -0.68 16 2 C -0.09 -0.53 5.20 30.59 0.16 -0.37 16 3 C -0.10 -1.09 0.79 -52.40 -0.04 -1.13 16 4 C 0.53 8.92 5.85 87.66 0.51 9.44 16 5 O -0.58 -15.29 15.76 -3.03 -0.05 -15.34 16 6 N -0.70 -8.56 5.09 -436.95 -2.22 -10.79 16 7 C 0.15 2.58 3.41 46.17 0.16 2.74 16 8 H 0.10 1.99 7.80 -2.39 -0.02 1.97 16 9 C -0.15 -3.70 6.58 30.59 0.20 -3.50 16 10 C 0.50 17.52 7.42 87.90 0.65 18.18 16 11 O -0.57 -27.26 14.61 -3.03 -0.04 -27.31 16 12 N -0.60 -17.76 3.15 -799.00 -2.52 -20.28 16 13 C 0.14 5.18 4.81 46.75 0.22 5.40 16 14 C 0.14 7.29 7.10 86.44 0.61 7.90 16 15 N -0.64 -35.30 3.70 -716.60 -2.65 -37.95 16 16 C -0.24 -14.16 10.69 84.03 0.90 -13.26 16 17 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 19 N -0.95 -59.69 11.29 21.65 0.24 -59.45 16 20 Si 0.98 47.59 29.56 68.60 2.03 49.61 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.11 4.91 8.44 86.49 0.73 5.64 16 25 C 0.10 1.61 7.08 86.95 0.62 2.23 16 26 C -0.12 -1.56 6.81 31.18 0.21 -1.35 16 27 C -0.13 -1.02 7.74 31.18 0.24 -0.78 16 28 C -0.12 -0.99 7.22 31.12 0.22 -0.77 16 29 H 0.05 0.52 7.08 -2.39 -0.02 0.50 16 30 H 0.04 0.47 7.33 -2.39 -0.02 0.45 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.23 7.67 -2.38 -0.02 0.21 16 33 H 0.09 0.28 7.31 -2.39 -0.02 0.26 16 34 H 0.42 2.42 7.90 -92.71 -0.73 1.69 16 35 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 36 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 38 H 0.02 1.20 5.72 -2.39 -0.01 1.19 16 39 H 0.05 2.94 6.87 -2.39 -0.02 2.92 16 40 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.02 1.08 7.25 -2.39 -0.02 1.06 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 1.13 7.79 -2.39 -0.02 1.11 16 45 H 0.07 1.20 7.53 -2.39 -0.02 1.18 16 46 H 0.08 0.88 7.01 -2.39 -0.02 0.87 16 47 H 0.10 0.43 7.60 -2.39 -0.02 0.41 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.10 0.40 8.10 -2.38 -0.02 0.38 16 50 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 Total: -1.00 -86.43 392.88 1.56 -84.87 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.21 Total: 10.57 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 6.56 Total: 26.06 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -7.15 Total: -128.47 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.09 Total: -42.65 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Total: -86.43 1.56 -84.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108565909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.714 kcal (2) G-P(sol) polarization free energy of solvation -86.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds