Wall clock time and date at job start Tue Mar 31 2020 19:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47103 * 120.00033 * 2 1 4 4 O 1.21611 * 119.99652 * 157.26462 * 3 2 1 5 5 N 1.34773 * 119.99739 * 336.98817 * 3 2 1 6 6 C 1.47085 * 120.87976 * 173.65770 * 5 3 2 7 7 C 1.53688 * 108.28021 * 128.75424 * 6 5 3 8 8 N 1.46899 * 109.25847 * 54.07948 * 7 6 5 9 9 C 1.46904 * 111.00173 * 172.61032 * 8 7 6 10 10 C 1.50708 * 109.46930 * 294.29990 * 9 8 7 11 11 O 1.21295 * 119.99570 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99876 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99625 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00241 * 0.02562 * 13 12 10 15 15 C 1.38952 * 119.99552 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00238 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99672 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47436 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47447 * 120.00029 * 17 15 13 20 20 H 1.48506 * 109.47132 * 239.99518 * 17 15 13 21 21 C 1.46893 * 111.27218 * 296.75917 * 8 7 6 22 22 C 1.47080 * 120.88542 * 353.92931 * 5 3 2 23 23 C 1.32996 * 119.99878 * 180.02562 * 2 1 3 24 24 C 1.51447 * 126.33791 * 179.68459 * 23 2 1 25 25 C 1.54275 * 106.84756 * 180.24104 * 24 23 2 26 26 C 1.54980 * 103.66331 * 23.48437 * 25 24 23 27 27 C 1.51845 * 126.33920 * 359.97438 * 23 2 1 28 28 H 1.08999 * 109.47432 * 96.58413 * 1 2 3 29 29 H 1.09000 * 109.47096 * 216.58497 * 1 2 3 30 30 H 1.09005 * 109.47084 * 336.57910 * 1 2 3 31 31 H 1.09010 * 109.62261 * 248.52218 * 6 5 3 32 32 H 1.08993 * 109.63050 * 9.09682 * 6 5 3 33 33 H 1.08997 * 109.64781 * 294.08112 * 7 6 5 34 34 H 1.09003 * 109.42191 * 173.94553 * 7 6 5 35 35 H 1.08991 * 109.47062 * 54.30240 * 9 8 7 36 36 H 1.08997 * 109.47265 * 174.30617 * 9 8 7 37 37 H 0.97000 * 119.99744 * 0.02562 * 12 10 9 38 38 H 0.97000 * 120.00357 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.49400 * 303.14695 * 21 8 7 40 40 H 1.08998 * 109.50019 * 183.06183 * 21 8 7 41 41 H 1.09004 * 109.62859 * 350.90158 * 22 5 3 42 42 H 1.09003 * 109.62929 * 111.47616 * 22 5 3 43 43 H 1.08995 * 109.98748 * 299.72190 * 24 23 2 44 44 H 1.09000 * 109.98456 * 61.03714 * 24 23 2 45 45 H 1.09005 * 110.79813 * 264.85947 * 25 24 23 46 46 H 1.09000 * 110.43117 * 141.93534 * 25 24 23 47 47 H 1.09001 * 110.83543 * 204.48976 * 26 25 24 48 48 H 1.09000 * 110.83132 * 80.91167 * 26 25 24 49 49 H 1.09002 * 110.44144 * 274.92414 * 27 23 2 50 50 H 1.09001 * 110.44428 * 37.32961 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.3878 1.3148 0.4070 5 7 1.6491 2.3946 -0.4563 6 6 2.3127 3.7019 -0.3383 7 6 2.3025 4.3742 -1.7203 8 7 0.9241 4.4214 -2.2259 9 6 0.8436 5.2105 -3.4624 10 6 1.1726 6.6502 -3.1619 11 8 1.4475 6.9857 -2.0291 12 7 1.1623 7.5647 -4.1519 13 6 1.4610 8.8745 -3.8783 14 1 1.7050 9.1734 -2.8696 15 6 1.4499 9.8173 -4.8989 16 7 1.1535 9.4535 -6.1264 17 14 1.8576 11.6018 -4.5263 18 1 2.1544 11.7499 -3.0789 19 1 3.0429 12.0149 -5.3200 20 1 0.6991 12.4593 -4.8840 21 6 0.3839 3.0704 -2.4276 22 6 0.3181 2.3438 -1.0801 23 6 2.1720 -1.1518 -0.0005 24 6 3.6772 -1.3190 -0.0073 25 6 3.9585 -2.8359 -0.0114 26 6 2.6647 -3.4466 -0.6071 27 6 1.5626 -2.5426 -0.0006 28 1 -0.3634 -0.1178 -1.0209 29 1 -0.3633 -0.8252 0.6125 30 1 -0.3633 0.9430 0.4085 31 1 1.7743 4.3225 0.3782 32 1 3.3411 3.5618 -0.0054 33 1 2.9236 3.8031 -2.4103 34 1 2.6929 5.3882 -1.6330 35 1 1.5549 4.8195 -4.1899 36 1 -0.1653 5.1459 -3.8697 37 1 0.9428 7.2962 -5.0578 38 1 1.1461 10.1116 -6.8390 39 1 1.0317 2.5174 -3.1077 40 1 -0.6173 3.1387 -2.8532 41 1 0.0271 1.3052 -1.2378 42 1 -0.4083 2.8363 -0.4336 43 1 4.0993 -0.8575 -0.8999 44 1 4.1065 -0.8651 0.8859 45 1 4.1233 -3.2017 1.0022 46 1 4.8159 -3.0622 -0.6452 47 1 2.5394 -4.4801 -0.2840 48 1 2.6684 -3.3771 -1.6948 49 1 1.3299 -2.8563 1.0170 50 1 0.6657 -2.5652 -0.6196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112764283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:37 Heat of formation + Delta-G solvation = -57.189205 kcal Electronic energy + Delta-G solvation = -29310.709797 eV Core-core repulsion = 25337.609247 eV Total energy + Delta-G solvation = -3973.100550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58492 -40.37906 -39.16854 -38.33955 -36.19559 -35.64452 -34.46633 -33.26968 -31.99436 -30.22753 -29.86954 -28.60347 -27.56244 -25.99817 -24.74559 -24.58219 -22.47571 -21.62933 -21.08639 -20.58600 -19.87908 -18.98511 -17.79607 -17.63706 -16.99668 -16.68401 -16.62268 -16.41518 -16.35179 -16.06660 -15.65892 -15.38244 -15.36546 -15.13095 -14.73076 -14.38614 -14.25006 -14.08185 -13.92002 -13.65008 -13.47843 -13.26206 -13.03977 -12.86928 -12.82334 -12.62399 -12.41265 -12.31279 -12.24415 -12.15803 -12.09269 -11.96194 -11.91497 -11.60904 -11.49655 -11.45938 -10.69708 -10.33487 -10.01090 -9.90766 -9.58535 -9.22118 -8.46864 -5.95012 0.40826 1.35736 1.41166 1.55111 1.92388 2.05383 2.14994 2.28243 2.73080 3.19970 3.34184 3.35251 3.68371 3.78812 3.90922 3.98594 4.07113 4.11633 4.15070 4.25502 4.28769 4.33773 4.42510 4.47435 4.48442 4.51128 4.56688 4.66146 4.71196 4.76039 4.81807 4.84166 4.89990 4.91256 4.98866 5.04089 5.05569 5.11483 5.20075 5.21856 5.39414 5.41288 5.41681 5.51150 5.66881 5.81512 6.01874 6.14592 6.46097 6.60768 7.12552 7.13361 7.56839 8.12662 8.70730 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002042 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.284155 B =13711.028340 C =13888.028889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.200 4.200 3 C 0.547 3.453 4 O -0.589 6.589 5 N -0.608 5.608 6 C 0.129 3.871 7 C 0.051 3.949 8 N -0.529 5.529 9 C 0.059 3.941 10 C 0.440 3.560 11 O -0.614 6.614 12 N -0.574 5.574 13 C -0.330 4.330 14 H 0.078 0.922 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.274 1.274 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.036 3.964 22 C 0.085 3.915 23 C -0.040 4.040 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.092 4.092 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.037 0.963 40 H 0.116 0.884 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -28.129 6.965 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.203 4.203 3 C 0.339 3.661 4 O -0.471 6.471 5 N -0.339 5.339 6 C 0.005 3.995 7 C -0.078 4.078 8 N -0.254 5.254 9 C -0.072 4.072 10 C 0.228 3.772 11 O -0.500 6.500 12 N -0.212 5.212 13 C -0.459 4.459 14 H 0.096 0.904 15 C -0.214 4.214 16 N -0.562 5.562 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.092 4.092 22 C -0.036 4.036 23 C -0.042 4.042 24 C -0.138 4.138 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.128 4.128 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.134 0.866 41 H 0.165 0.835 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.146 -27.529 8.099 28.993 hybrid contribution 1.170 1.298 -1.028 2.027 sum -2.976 -26.231 7.071 27.330 Atomic orbital electron populations 1.21159 0.88042 1.04147 1.03536 1.20818 0.97836 0.90026 1.11653 1.19081 0.85619 0.84806 0.76586 1.90727 1.19526 1.86606 1.50248 1.48170 1.20149 1.06341 1.59289 1.21532 0.98386 0.83088 0.96454 1.22454 0.89189 1.00768 0.95348 1.61512 1.20731 1.14359 1.28819 1.21743 1.03822 0.90029 0.91616 1.20787 0.82756 0.88521 0.85150 1.90468 1.54560 1.81965 1.22962 1.41939 1.61564 1.07552 1.10138 1.19673 1.45517 0.84741 0.95988 0.90372 1.26020 0.96788 1.04092 0.94479 1.69673 1.48936 1.36871 1.00677 0.84888 0.78236 0.77131 0.78182 1.19902 1.19752 1.19529 1.22748 1.01829 0.87044 0.97531 1.23120 0.82823 1.04761 0.92892 1.22992 0.95962 0.95070 0.90173 1.21277 0.93274 0.97724 1.01497 1.22442 0.98973 0.92907 1.01917 1.22548 0.93181 0.99568 1.00435 1.21634 0.99131 0.88953 1.03102 0.88108 0.89538 0.90781 0.91257 0.90407 0.95760 0.90635 0.92020 0.86237 0.77021 0.91348 0.94436 0.86637 0.83462 0.89960 0.92663 0.91857 0.90640 0.91070 0.88974 0.91079 0.88243 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 7.39 71.24 0.53 -0.66 16 2 C -0.20 -3.85 5.68 -18.70 -0.11 -3.95 16 3 C 0.55 15.33 7.41 86.57 0.64 15.97 16 4 O -0.59 -21.06 14.07 -4.07 -0.06 -21.11 16 5 N -0.61 -16.20 3.00 -821.32 -2.47 -18.67 16 6 C 0.13 4.15 6.64 86.50 0.57 4.73 16 7 C 0.05 1.80 5.27 86.53 0.46 2.25 16 8 N -0.53 -16.88 4.37 -898.90 -3.93 -20.81 16 9 C 0.06 2.00 5.45 85.56 0.47 2.47 16 10 C 0.44 20.86 7.44 87.66 0.65 21.51 16 11 O -0.61 -33.70 13.91 -3.08 -0.04 -33.74 16 12 N -0.57 -29.42 5.29 -306.97 -1.62 -31.04 16 13 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 16 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 17 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 21 C 0.04 0.79 5.62 86.38 0.49 1.27 16 22 C 0.08 1.62 4.82 86.35 0.42 2.03 16 23 C -0.04 -0.70 6.10 -17.01 -0.10 -0.81 16 24 C -0.10 -2.08 4.97 30.52 0.15 -1.93 16 25 C -0.12 -1.67 6.87 31.70 0.22 -1.45 16 26 C -0.12 -1.09 6.94 31.92 0.22 -0.87 16 27 C -0.09 -0.87 5.74 30.87 0.18 -0.69 16 28 H 0.10 0.59 6.81 -2.39 -0.02 0.58 16 29 H 0.09 0.61 7.55 -2.39 -0.02 0.60 16 30 H 0.07 0.85 6.05 -2.38 -0.01 0.83 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.08 2.68 7.04 -2.39 -0.02 2.67 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 3.24 5.76 -2.39 -0.01 3.23 16 35 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.12 3.39 7.97 -2.39 -0.02 3.37 16 37 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 38 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.12 1.87 7.99 -2.39 -0.02 1.85 16 41 H 0.15 1.81 3.24 -2.80 -0.01 1.80 16 42 H 0.08 1.52 7.93 -2.39 -0.02 1.50 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.63 7.35 -2.39 -0.02 1.61 16 45 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.10 0.58 7.79 -2.39 -0.02 0.56 16 Total: -1.00 -75.18 386.35 0.47 -74.71 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.22 Total: 33.13 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.06 Total: 21.63 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -7.73 Total: -119.95 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.18 0.47 -74.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112764283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.522 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds