Wall clock time and date at job start Tue Mar 31 2020 19:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47059 * 2 1 4 4 C 1.50696 * 112.85269 * 54.14341 * 3 2 1 5 5 O 1.21278 * 119.99930 * 246.36828 * 4 3 2 6 6 N 1.34778 * 119.99653 * 66.35955 * 4 3 2 7 7 C 1.46504 * 119.99643 * 185.09807 * 6 4 3 8 8 H 1.09002 * 115.51727 * 9.58229 * 7 6 4 9 9 C 1.53002 * 117.44192 * 224.23191 * 7 6 4 10 10 H 1.09001 * 119.52991 * 4.09209 * 9 7 6 11 11 C 1.54384 * 118.12990 * 160.68591 * 9 7 6 12 12 N 1.48561 * 104.59670 * 87.22518 * 11 9 7 13 13 C 1.46887 * 111.00157 * 200.96207 * 12 11 9 14 14 C 1.50703 * 109.47252 * 285.41895 * 13 12 11 15 15 O 1.21290 * 119.99975 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00251 * 180.02562 * 14 13 12 17 17 C 1.37088 * 120.00298 * 180.02562 * 16 14 13 18 18 H 1.08009 * 119.99748 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00353 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00193 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47173 * 119.99591 * 21 19 17 24 24 H 1.48502 * 109.46928 * 239.99822 * 21 19 17 25 25 C 1.48565 * 104.21926 * 320.52359 * 12 11 9 26 26 C 1.53001 * 117.44409 * 155.00320 * 7 6 4 27 27 H 1.09000 * 119.52656 * 354.35613 * 26 7 6 28 28 C 1.53782 * 113.61325 * 185.34154 * 3 2 1 29 29 C 1.53779 * 87.08427 * 89.19995 * 28 3 2 30 30 C 1.53782 * 87.08048 * 25.43089 * 29 28 3 31 31 H 1.08993 * 109.47110 * 174.92896 * 1 2 3 32 32 H 1.09002 * 109.47011 * 294.92241 * 1 2 3 33 33 H 1.08996 * 109.47323 * 54.92203 * 1 2 3 34 34 H 1.09000 * 109.46901 * 240.00273 * 2 1 3 35 35 H 1.08996 * 109.47830 * 119.99963 * 2 1 3 36 36 H 0.96995 * 120.00588 * 5.10448 * 6 4 3 37 37 H 1.09000 * 110.40839 * 328.44945 * 11 9 7 38 38 H 1.08996 * 110.41030 * 206.00893 * 11 9 7 39 39 H 1.09001 * 109.47468 * 45.42094 * 13 12 11 40 40 H 1.09004 * 109.47061 * 165.42237 * 13 12 11 41 41 H 0.97008 * 119.99432 * 359.97438 * 16 14 13 42 42 H 0.97000 * 120.00272 * 180.02562 * 20 19 17 43 43 H 1.09004 * 110.40909 * 280.69593 * 25 12 11 44 44 H 1.09003 * 110.50872 * 158.31396 * 25 12 11 45 45 H 1.08998 * 113.61421 * 334.64912 * 28 3 2 46 46 H 1.09004 * 113.61333 * 203.74943 * 28 3 2 47 47 H 1.08996 * 113.61748 * 139.98094 * 29 28 3 48 48 H 1.09003 * 113.61263 * 270.88339 * 29 28 3 49 49 H 1.08995 * 113.61702 * 89.11900 * 30 29 28 50 50 H 1.09003 * 113.61630 * 220.02290 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4681 2.2655 1.1255 5 8 0.7224 3.1904 0.8822 6 7 1.7854 1.9734 2.4024 7 6 1.1439 2.6999 3.5011 8 1 0.3099 3.3414 3.2161 9 6 2.0371 3.1744 4.6491 10 1 3.1149 3.0231 4.5891 11 6 1.5094 4.3000 5.5645 12 7 0.7313 3.5944 6.6150 13 6 -0.2262 4.5024 7.2602 14 6 0.5112 5.4336 8.1878 15 8 1.7159 5.3493 8.2999 16 7 -0.1680 6.3600 8.8927 17 6 0.5028 7.2074 9.7361 18 1 1.5757 7.1323 9.8359 19 6 -0.1975 8.1621 10.4632 20 7 -1.5028 8.2531 10.3421 21 14 0.7166 9.3163 11.6130 22 1 2.1693 9.0111 11.5687 23 1 0.4931 10.7206 11.1851 24 1 0.2142 9.1350 12.9986 25 6 0.0268 2.5112 5.8817 26 6 1.0617 1.9976 4.8579 27 1 1.3898 0.9620 4.9474 28 6 3.5680 1.5557 -0.1312 29 6 3.3570 1.5762 -1.6543 30 6 1.9501 2.1297 -1.3728 31 1 -0.3633 -1.0236 -0.0908 32 1 -0.3633 0.4331 0.9320 33 1 -0.3634 0.5906 -0.8410 34 1 1.8932 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.4384 1.2823 2.5941 37 1 0.8643 4.9756 5.0029 38 1 2.3395 4.8482 6.0100 39 1 -0.7452 5.0843 6.4984 40 1 -0.9512 3.9210 7.8299 41 1 -1.1315 6.4276 8.8027 42 1 -1.9917 8.9199 10.8494 43 1 -0.8504 2.9069 5.3698 44 1 -0.2610 1.7121 6.5649 45 1 4.1031 0.6749 0.2237 46 1 3.9726 2.4866 0.2662 47 1 4.0065 2.2792 -2.1757 48 1 3.3536 0.5851 -2.1080 49 1 1.9123 3.2175 -1.3150 50 1 1.1790 1.7122 -2.0204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114715815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:20 Heat of formation + Delta-G solvation = -41.438899 kcal Electronic energy + Delta-G solvation = -28712.332094 eV Core-core repulsion = 24739.914529 eV Total energy + Delta-G solvation = -3972.417565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90803 -41.07151 -39.83100 -38.67892 -36.38906 -35.79504 -33.85953 -33.29180 -33.07993 -29.46976 -29.23535 -27.52240 -26.55410 -26.43245 -24.21746 -23.46932 -22.05239 -21.99418 -21.38070 -20.92547 -19.88300 -19.54603 -18.14707 -17.84774 -17.64683 -16.67099 -16.59892 -16.50436 -16.28638 -16.06119 -15.60520 -15.34251 -14.99873 -14.98488 -14.83788 -14.39148 -14.11305 -13.89054 -13.60163 -13.55982 -13.42574 -13.31958 -13.12570 -12.95840 -12.69271 -12.54120 -12.46618 -12.43685 -12.40804 -12.20606 -12.12296 -11.92421 -11.88213 -11.50653 -11.28531 -11.18951 -11.09979 -10.62119 -10.34224 -10.02020 -9.83687 -9.40698 -8.47529 -5.96245 1.35576 1.40400 1.48680 1.54953 1.89181 2.04085 2.27639 2.61960 2.80466 3.18850 3.33861 3.37234 3.47000 3.56921 3.64870 3.75403 3.80615 3.86558 3.92612 4.05575 4.22418 4.25562 4.35289 4.38068 4.44623 4.46857 4.49976 4.50931 4.60353 4.76810 4.79784 4.83015 4.86698 4.88783 4.99914 5.04823 5.08413 5.10029 5.11400 5.16584 5.27949 5.37454 5.40006 5.42124 5.51597 5.77571 5.84212 6.05460 6.47850 6.59620 7.12105 7.18582 7.55202 8.11242 8.70250 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.001870 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.528220 B =14966.778026 C =15234.386660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.103 4.103 4 C 0.531 3.469 5 O -0.584 6.584 6 N -0.683 5.683 7 C 0.112 3.888 8 H 0.108 0.892 9 C -0.171 4.171 10 H 0.128 0.872 11 C 0.068 3.932 12 N -0.503 5.503 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.615 6.615 16 N -0.576 5.576 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.057 3.943 26 C -0.143 4.143 27 H 0.149 0.851 28 C -0.123 4.123 29 C -0.129 4.129 30 C -0.124 4.124 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.418 0.582 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.063 0.937 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -21.022 -23.539 31.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.320 3.680 5 O -0.463 6.463 6 N -0.333 5.333 7 C 0.005 3.995 8 H 0.126 0.874 9 C -0.191 4.191 10 H 0.146 0.854 11 C -0.060 4.060 12 N -0.227 5.227 13 C -0.086 4.086 14 C 0.230 3.770 15 O -0.501 6.501 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.215 4.215 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.070 4.070 26 C -0.163 4.163 27 H 0.167 0.833 28 C -0.161 4.161 29 C -0.166 4.166 30 C -0.162 4.162 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.255 0.745 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.133 0.867 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.082 0.918 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.600 -20.520 -23.114 31.412 hybrid contribution -0.671 1.435 0.433 1.643 sum 4.929 -19.085 -22.681 30.049 Atomic orbital electron populations 1.21786 0.96245 1.02416 1.00904 1.21343 0.95389 0.90992 1.04863 1.22361 0.98380 0.97070 0.92830 1.21106 0.79456 0.83501 0.83921 1.90689 1.38764 1.32308 1.84584 1.45180 1.44363 1.39722 1.04023 1.21519 0.97640 0.98056 0.82312 0.87385 1.23846 0.98643 0.96393 1.00239 0.85374 1.22494 0.97871 0.94947 0.90686 1.65231 1.21256 1.09847 1.26409 1.21920 0.94369 0.94845 0.97444 1.20720 0.88132 0.83641 0.84550 1.90478 1.16219 1.73670 1.69738 1.41937 1.10034 1.30486 1.38865 1.19689 0.93483 1.12533 1.20372 0.90359 1.26063 0.96503 0.99345 0.99563 1.69681 1.07130 1.36456 1.42974 0.84856 0.78018 0.77606 0.77755 1.19806 1.19653 1.19465 1.22776 0.94702 0.94695 0.94794 1.23886 0.99401 0.98612 0.94385 0.83306 1.22994 0.91873 1.03495 0.97704 1.22834 0.95372 1.02667 0.95755 1.22874 0.99156 0.99753 0.94386 0.90634 0.94773 0.93386 0.88344 0.89430 0.74454 0.94684 0.91650 0.91523 0.86707 0.77057 0.91318 0.92891 0.87510 0.87926 0.90870 0.90791 0.87615 0.91820 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.49 71.98 0.68 -1.21 16 2 C -0.09 -0.72 5.31 30.59 0.16 -0.56 16 3 C -0.10 -1.33 0.81 -52.40 -0.04 -1.38 16 4 C 0.53 11.03 5.55 87.66 0.49 11.52 16 5 O -0.58 -18.09 15.76 -3.02 -0.05 -18.14 16 6 N -0.68 -11.54 5.56 -442.53 -2.46 -14.00 16 7 C 0.11 2.45 5.96 44.99 0.27 2.72 16 8 H 0.11 2.96 7.43 -2.39 -0.02 2.94 16 9 C -0.17 -4.20 7.05 -9.89 -0.07 -4.27 16 10 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 11 C 0.07 2.28 5.73 86.45 0.49 2.77 16 12 N -0.50 -16.87 4.98 -886.05 -4.41 -21.28 16 13 C 0.05 1.66 5.32 85.56 0.45 2.12 16 14 C 0.44 21.87 7.63 87.66 0.67 22.54 16 15 O -0.62 -35.16 14.80 -3.06 -0.05 -35.21 16 16 N -0.58 -30.47 5.29 -306.98 -1.62 -32.10 16 17 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 18 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 19 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 20 N -0.92 -50.73 13.05 21.66 0.28 -50.44 16 21 Si 0.99 43.86 29.55 68.60 2.03 45.88 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C 0.06 1.36 6.26 86.45 0.54 1.90 16 26 C -0.14 -2.83 7.05 -9.90 -0.07 -2.90 16 27 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 28 C -0.12 -1.12 7.22 31.12 0.22 -0.90 16 29 C -0.13 -1.08 7.73 31.12 0.24 -0.84 16 30 C -0.12 -1.78 6.75 31.12 0.21 -1.57 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.03 0.55 7.46 -2.39 -0.02 0.54 16 33 H 0.05 0.69 7.47 -2.39 -0.02 0.67 16 34 H 0.10 0.44 7.32 -2.39 -0.02 0.42 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.42 4.29 8.83 -92.71 -0.82 3.47 16 37 H 0.03 1.19 7.75 -2.39 -0.02 1.17 16 38 H 0.06 2.65 7.24 -2.39 -0.02 2.64 16 39 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 40 H 0.11 3.60 8.08 -2.39 -0.02 3.58 16 41 H 0.40 19.89 7.90 -92.70 -0.73 19.16 16 42 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.05 1.20 8.00 -2.38 -0.02 1.18 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.10 0.44 8.10 -2.39 -0.02 0.42 16 46 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 48 H 0.11 0.46 7.61 -2.39 -0.02 0.45 16 49 H 0.06 1.26 7.73 -2.39 -0.02 1.24 16 50 H 0.08 1.02 7.55 -2.39 -0.02 1.00 16 Total: -1.00 -76.67 401.99 -1.34 -78.01 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.59 Total: 36.16 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.53 Total: 11.11 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -8.21 Total: -117.82 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.09 Total: -53.35 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.67 -1.34 -78.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114715815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.572 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds