Wall clock time and date at job start Tue Mar 31 2020 20:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47265 * 2 1 4 4 N 1.30012 * 127.33484 * 269.96046 * 3 2 1 5 5 O 1.20660 * 112.30264 * 180.02562 * 4 3 2 6 6 C 1.33501 * 113.15311 * 359.71565 * 5 4 3 7 7 C 1.50702 * 126.82958 * 180.30823 * 6 5 4 8 8 C 1.37361 * 106.33971 * 0.45643 * 6 5 4 9 9 C 1.47400 * 128.56308 * 179.85883 * 8 6 5 10 10 O 1.21606 * 119.99684 * 269.67188 * 9 8 6 11 11 N 1.34774 * 120.00030 * 89.66912 * 9 8 6 12 12 C 1.46503 * 120.00292 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47555 * 176.34336 * 12 11 9 14 14 N 1.46507 * 109.47033 * 54.58761 * 13 12 11 15 15 C 1.36928 * 120.00186 * 62.98479 * 14 13 12 16 16 H 1.08002 * 120.00207 * 354.28319 * 15 14 13 17 17 C 1.38812 * 120.00381 * 174.55353 * 15 14 13 18 18 N 1.31621 * 119.99370 * 359.72303 * 17 15 14 19 19 Si 1.86793 * 120.00509 * 179.72911 * 17 15 14 20 20 H 1.48506 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47345 * 119.99502 * 19 17 15 22 22 H 1.48497 * 109.47212 * 239.99844 * 19 17 15 23 23 C 1.52998 * 109.47003 * 174.58334 * 13 12 11 24 24 C 1.53008 * 109.46950 * 180.02562 * 23 13 12 25 25 C 1.52994 * 109.47191 * 299.99899 * 24 23 13 26 26 C 1.53006 * 109.46920 * 60.00027 * 25 24 23 27 27 C 1.52994 * 109.47268 * 299.99919 * 26 25 24 28 28 H 1.08999 * 109.46777 * 299.99635 * 1 2 3 29 29 H 1.08990 * 109.47302 * 59.99509 * 1 2 3 30 30 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46803 * 239.99606 * 2 1 3 32 32 H 1.08999 * 109.47510 * 120.00581 * 2 1 3 33 33 H 1.08999 * 109.46992 * 270.17225 * 7 6 5 34 34 H 1.09002 * 109.47072 * 30.17336 * 7 6 5 35 35 H 1.08998 * 109.47077 * 150.17120 * 7 6 5 36 36 H 0.96998 * 120.00441 * 0.02562 * 11 9 8 37 37 H 1.09006 * 109.46401 * 56.34333 * 12 11 9 38 38 H 1.08998 * 109.47050 * 296.35464 * 12 11 9 39 39 H 0.96999 * 119.99460 * 242.99741 * 14 13 12 40 40 H 0.97002 * 119.99590 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47578 * 300.00032 * 23 13 12 42 42 H 1.09000 * 109.47131 * 60.00587 * 23 13 12 43 43 H 1.08999 * 109.46844 * 179.97438 * 24 23 13 44 44 H 1.09000 * 109.46987 * 60.00177 * 24 23 13 45 45 H 1.08998 * 109.47317 * 300.00583 * 25 24 23 46 46 H 1.09000 * 109.47277 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.46934 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.47086 * 59.99827 * 26 25 24 49 49 H 1.09006 * 109.47198 * 300.00356 * 27 26 25 50 50 H 1.09001 * 109.47675 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2959 2.1639 -1.0337 5 8 2.6846 3.2625 -0.7208 6 6 2.7413 3.4425 0.6008 7 6 3.1743 4.6913 1.3247 8 6 2.3296 2.2619 1.1696 9 6 2.2092 1.9235 2.5992 10 8 3.1523 1.4326 3.1893 11 7 1.0539 2.1584 3.2523 12 6 0.9339 1.8216 4.6730 13 6 -0.4349 2.2691 5.1895 14 7 -1.4869 1.6869 4.3524 15 6 -1.6411 0.3276 4.2934 16 1 -0.9315 -0.3185 4.7890 17 6 -2.7061 -0.2203 3.5917 18 7 -3.5709 0.5670 2.9878 19 14 -2.9122 -2.0748 3.5048 20 1 -1.8152 -2.7308 4.2608 21 1 -4.2193 -2.4560 4.0977 22 1 -2.8657 -2.5121 2.0864 23 6 -0.6137 1.7983 6.6342 24 6 -1.9829 2.2453 7.1505 25 6 -2.0749 3.7715 7.0965 26 6 -1.8961 4.2423 5.6517 27 6 -0.5270 3.7954 5.1354 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2493 4.6548 1.5011 34 1 2.9351 5.5645 0.7177 35 1 2.6515 4.7579 2.2788 36 1 0.3015 2.5497 2.7815 37 1 1.7181 2.3299 5.2342 38 1 1.0361 0.7440 4.8008 39 1 -2.0741 2.2644 3.8400 40 1 -4.3154 0.1841 2.4979 41 1 -0.5485 0.7109 6.6728 42 1 0.1690 2.2315 7.2570 43 1 -2.1104 1.9095 8.1796 44 1 -2.7653 1.8118 6.5277 45 1 -1.2924 4.2050 7.7193 46 1 -3.0505 4.0900 7.4639 47 1 -1.9612 5.3297 5.6132 48 1 -2.6785 3.8088 5.0288 49 1 0.2555 4.2289 5.7583 50 1 -0.3993 4.1312 4.1063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120126237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:22 Heat of formation + Delta-G solvation = 7.896352 kcal Electronic energy + Delta-G solvation = -31182.485187 eV Core-core repulsion = 27212.206959 eV Total energy + Delta-G solvation = -3970.278228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.75891 -39.56635 -38.39436 -35.13250 -34.49226 -33.61848 -33.26048 -31.26809 -31.05395 -30.27986 -28.72154 -28.01120 -25.91292 -24.35585 -23.82787 -23.33016 -22.12590 -20.64988 -20.17591 -19.64228 -18.43595 -17.73177 -17.64069 -17.13168 -16.22357 -15.59532 -15.14721 -14.84263 -14.67293 -14.15204 -14.10935 -13.91683 -13.64988 -13.58030 -13.41363 -13.40649 -13.04015 -12.81264 -12.69000 -12.40244 -12.11365 -11.94365 -11.74942 -11.61017 -11.37177 -11.29379 -11.16770 -10.93218 -10.81109 -10.66985 -10.58575 -10.18264 -10.09341 -10.00434 -9.79652 -9.73270 -9.63602 -9.36120 -9.29152 -8.92891 -8.56397 -7.05610 -5.84593 -3.13618 1.38719 2.05527 2.69537 2.96061 3.36906 3.45476 3.46165 3.64287 4.22445 4.34535 4.52409 4.96063 5.00428 5.14750 5.21262 5.23153 5.23762 5.25112 5.39553 5.48814 5.51581 5.53220 5.55804 5.57905 5.68277 5.77864 5.80200 5.93252 5.99355 6.00917 6.07402 6.11371 6.14426 6.16270 6.25303 6.29296 6.40793 6.43989 6.54658 6.63936 6.72640 6.75848 6.77842 6.91575 6.99478 7.16948 7.67893 7.91090 8.32554 8.32879 8.51662 9.45980 9.98153 10.34886 11.37063 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.005148 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.661810 B = 5437.194640 C = 7307.597365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.066 3.934 4 N -0.360 5.360 5 O 0.092 5.908 6 C 0.006 3.994 7 C -0.075 4.075 8 C -0.239 4.239 9 C 0.593 3.407 10 O -0.543 6.543 11 N -0.685 5.685 12 C 0.114 3.886 13 C 0.191 3.809 14 N -0.709 5.709 15 C -0.230 4.230 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.928 5.928 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.114 4.114 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.113 4.113 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.405 0.595 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.385 0.615 40 H 0.253 0.747 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 9.164 0.238 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.096 4.096 4 N -0.066 5.066 5 O 0.031 5.969 6 C -0.058 4.058 7 C -0.132 4.132 8 C -0.247 4.247 9 C 0.376 3.624 10 O -0.421 6.421 11 N -0.335 5.335 12 C -0.012 4.012 13 C 0.099 3.901 14 N -0.351 5.351 15 C -0.361 4.361 16 H 0.087 0.913 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.151 4.151 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.220 0.780 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.115 8.468 -0.618 12.457 hybrid contribution -0.796 -0.973 0.255 1.283 sum 8.319 7.495 -0.363 11.203 Atomic orbital electron populations 1.21717 0.92359 1.03032 1.03267 1.20039 0.97469 0.87202 1.03786 1.24801 0.99557 0.98846 0.86405 1.73573 1.17042 0.92580 1.23398 1.84502 1.63034 1.26829 1.22547 1.24542 0.99869 0.97467 0.83883 1.20406 1.02934 0.90638 0.99230 1.22039 1.11932 0.94932 0.95754 1.16842 0.83296 0.78595 0.83642 1.90781 1.39012 1.44380 1.67919 1.45765 1.13734 1.62063 1.11889 1.21966 0.98707 1.00899 0.79653 1.19815 0.87972 0.91133 0.91198 1.42457 1.36036 1.04397 1.52225 1.19086 1.06873 0.82911 1.27202 0.91310 1.24625 0.97486 0.96968 1.01017 1.69650 1.16194 1.33090 1.38693 0.86311 0.77462 0.86322 0.77295 1.20646 1.22041 1.21960 1.21784 0.96424 1.01216 0.95952 1.21370 0.99049 0.94605 0.99664 1.21467 1.00168 0.96909 0.96422 1.21471 0.98014 0.98896 0.96901 1.21690 0.97413 0.95668 1.00377 0.90545 0.92821 0.91552 0.90073 0.89376 0.88953 0.89295 0.88907 0.75847 0.92628 0.91538 0.78045 0.93661 0.91724 0.93738 0.93796 0.89788 0.93255 0.93055 0.93312 0.90703 0.92256 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.89 37.16 0.37 -2.00 16 2 C -0.05 -0.71 6.54 -27.89 -0.18 -0.90 16 3 C 0.07 1.07 6.84 -79.77 -0.55 0.53 16 4 N -0.36 -5.76 12.01 34.78 0.42 -5.34 16 5 O 0.09 1.32 11.06 18.63 0.21 1.52 16 6 C 0.01 0.08 7.55 -34.63 -0.26 -0.18 16 7 C -0.07 -0.65 10.33 36.01 0.37 -0.28 16 8 C -0.24 -3.79 6.24 -102.89 -0.64 -4.43 16 9 C 0.59 10.28 7.60 -12.53 -0.10 10.18 16 10 O -0.54 -11.02 17.11 5.27 0.09 -10.93 16 11 N -0.69 -11.27 5.09 -61.39 -0.31 -11.58 16 12 C 0.11 1.92 4.37 -4.04 -0.02 1.90 16 13 C 0.19 3.15 0.41 -131.82 -0.05 3.10 16 14 N -0.71 -14.40 3.39 -47.23 -0.16 -14.56 16 15 C -0.23 -5.46 8.70 -15.06 -0.13 -5.59 16 16 H 0.07 1.68 6.77 -52.49 -0.36 1.32 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 18 N -0.93 -25.11 13.07 55.49 0.73 -24.38 16 19 Si 0.89 21.12 29.55 -169.99 -5.02 16.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.11 -1.85 4.52 -26.73 -0.12 -1.97 16 24 C -0.11 -1.76 5.77 -26.73 -0.15 -1.91 16 25 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 26 C -0.12 -1.64 5.75 -26.73 -0.15 -1.79 16 27 C -0.11 -1.60 4.65 -26.73 -0.12 -1.72 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.41 6.66 7.38 -40.82 -0.30 6.36 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 39 H 0.38 8.50 6.63 -40.82 -0.27 8.23 16 40 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.06 1.17 7.23 -51.93 -0.38 0.79 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.65 7.60 -51.93 -0.39 1.25 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 LS Contribution 400.94 15.07 6.04 6.04 Total: -1.00 -28.31 400.94 -8.31 -36.62 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.30 Total: 13.50 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.00 Total: -6.99 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.67 Total: -55.86 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.30 Total: -9.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.31 -8.31 -36.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120126237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.517 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds