Wall clock time and date at job start Tue Mar 31 2020 19:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47232 * 2 1 4 4 O 1.33492 * 126.82926 * 269.97263 * 3 2 1 5 5 N 1.20663 * 113.15863 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29873 * 359.71144 * 5 4 3 7 7 C 1.50693 * 127.33347 * 180.30112 * 6 5 4 8 8 C 1.37363 * 126.83136 * 90.00004 * 3 2 1 9 9 C 1.47401 * 128.56039 * 359.95378 * 8 3 2 10 10 O 1.21608 * 119.99884 * 90.00719 * 9 8 3 11 11 N 1.34772 * 120.00022 * 269.99619 * 9 8 3 12 12 C 1.46923 * 120.63343 * 0.03383 * 11 9 8 13 13 C 1.53195 * 108.77575 * 233.58368 * 12 11 9 14 14 C 1.53046 * 109.30793 * 305.36150 * 13 12 11 15 15 H 1.08998 * 109.45610 * 181.38442 * 14 13 12 16 16 C 1.52996 * 109.45954 * 301.34110 * 14 13 12 17 17 C 1.53043 * 109.53700 * 61.36640 * 14 13 12 18 18 H 1.09000 * 109.49738 * 58.58741 * 17 14 13 19 19 C 1.53005 * 109.49399 * 178.64869 * 17 14 13 20 20 N 1.46503 * 109.46818 * 184.99658 * 19 17 14 21 21 C 1.36934 * 119.99769 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99988 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00270 * 180.02562 * 21 20 19 24 24 N 1.31613 * 120.00285 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99825 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46968 * 89.99768 * 25 23 21 27 27 H 1.48493 * 109.47125 * 210.00003 * 25 23 21 28 28 H 1.48498 * 109.46966 * 330.00167 * 25 23 21 29 29 C 1.46931 * 120.62926 * 180.02562 * 11 9 8 30 30 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46789 * 300.00713 * 1 2 3 32 32 H 1.09006 * 109.46684 * 59.99788 * 1 2 3 33 33 H 1.08998 * 109.47265 * 240.00111 * 2 1 3 34 34 H 1.08994 * 109.46864 * 119.99846 * 2 1 3 35 35 H 1.08997 * 109.47546 * 270.14679 * 7 6 5 36 36 H 1.09000 * 109.47690 * 30.15208 * 7 6 5 37 37 H 1.09004 * 109.47080 * 150.15298 * 7 6 5 38 38 H 1.08996 * 109.59375 * 113.79430 * 12 11 9 39 39 H 1.09006 * 109.58686 * 353.36430 * 12 11 9 40 40 H 1.08990 * 109.49959 * 185.41234 * 13 12 11 41 41 H 1.08999 * 109.49609 * 65.30943 * 13 12 11 42 42 H 1.08998 * 109.46827 * 60.00714 * 16 14 13 43 43 H 1.09002 * 109.47167 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47424 * 300.00184 * 16 14 13 45 45 H 1.08994 * 109.47250 * 305.00121 * 19 17 14 46 46 H 1.09007 * 109.46564 * 65.00040 * 19 17 14 47 47 H 0.96991 * 120.00046 * 0.02562 * 20 19 17 48 48 H 0.97006 * 119.99981 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58511 * 6.62918 * 29 11 9 50 50 H 1.09004 * 109.58611 * 246.20718 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2996 2.1750 -1.0685 5 7 2.6908 3.2803 -0.7833 6 6 2.7499 3.4663 0.5021 7 6 3.1830 4.7151 1.2258 8 6 2.3069 2.1971 1.0995 9 6 2.1821 1.8469 2.5258 10 8 3.1233 1.3509 3.1147 11 7 1.0249 2.0767 3.1774 12 6 -0.1212 2.6749 2.4794 13 6 -0.5905 3.9035 3.2649 14 6 -0.8775 3.4991 4.7128 15 1 -1.2351 4.3663 5.2679 16 6 -1.9464 2.4046 4.7339 17 6 0.4049 2.9722 5.3609 18 1 1.1745 3.7432 5.3240 19 6 0.1247 2.5998 6.8182 20 7 1.3763 2.2087 7.4715 21 6 1.3728 1.8321 8.7881 22 1 0.4473 1.8231 9.3447 23 6 2.5587 1.4621 9.4073 24 7 2.5552 1.0997 10.6726 25 14 4.1596 1.4784 8.4448 26 1 4.7995 2.8125 8.5712 27 1 5.0721 0.4385 8.9843 28 1 3.8796 1.1973 7.0138 29 6 0.8855 1.7336 4.5992 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.2580 4.6784 1.4025 36 1 2.9442 5.5883 0.6188 37 1 2.6602 4.7819 2.1800 38 1 -0.9318 1.9487 2.4185 39 1 0.1787 2.9758 1.4755 40 1 -1.4985 4.3004 2.8112 41 1 0.1886 4.6656 3.2477 42 1 -1.5893 1.5374 4.1784 43 1 -2.1513 2.1167 5.7651 44 1 -2.8602 2.7801 4.2735 45 1 -0.3032 3.4577 7.3367 46 1 -0.5783 1.7673 6.8517 47 1 2.2075 2.2172 6.9717 48 1 3.3841 0.8414 11.1054 49 1 1.8497 1.4132 4.9940 50 1 0.1572 0.9303 4.7116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133301707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:19 Heat of formation + Delta-G solvation = 4.430422 kcal Electronic energy + Delta-G solvation = -30899.615190 eV Core-core repulsion = 26929.186668 eV Total energy + Delta-G solvation = -3970.428522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.00960 -41.55866 -39.39435 -36.83554 -35.94047 -35.63590 -34.81882 -33.68861 -31.97248 -31.36856 -29.88222 -28.79734 -27.82031 -26.25575 -25.16428 -24.58391 -24.38654 -22.59185 -21.68597 -20.80500 -19.92745 -19.22915 -18.92334 -18.48926 -17.70317 -17.18945 -16.78718 -16.43418 -16.17240 -15.97382 -15.57344 -15.36781 -15.15319 -14.89510 -14.63949 -14.47715 -14.42640 -14.35525 -14.07770 -13.92759 -13.86285 -13.49528 -13.41314 -13.10004 -12.98214 -12.69794 -12.57413 -12.51003 -12.44751 -12.25133 -12.06817 -11.87999 -11.86831 -11.75252 -11.50300 -11.31996 -11.25102 -11.00661 -10.94593 -10.46496 -9.73284 -9.30270 -8.06332 -5.37737 0.20347 0.76181 1.17813 1.32542 1.36234 1.42126 1.62568 2.02010 2.43030 2.95698 3.14401 3.26175 3.42518 3.53104 3.72741 3.74660 3.85799 3.97953 4.00697 4.08947 4.18768 4.21232 4.25328 4.32541 4.42254 4.44538 4.47591 4.53136 4.62433 4.65842 4.74277 4.75425 4.76865 4.89197 4.96348 4.96817 4.98864 5.03243 5.07952 5.15080 5.23006 5.28044 5.30854 5.36761 5.42742 5.59836 5.74460 6.18757 6.19822 6.90003 7.05197 7.10844 7.82897 7.98901 9.15325 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003696 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.084440 B = 7574.303833 C = 8328.968938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.036 3.964 4 O 0.098 5.902 5 N -0.370 5.370 6 C 0.052 3.948 7 C -0.079 4.079 8 C -0.264 4.264 9 C 0.597 3.403 10 O -0.576 6.576 11 N -0.587 5.587 12 C 0.104 3.896 13 C -0.122 4.122 14 C -0.078 4.078 15 H 0.083 0.917 16 C -0.152 4.152 17 C -0.095 4.095 18 H 0.061 0.939 19 C 0.162 3.838 20 N -0.762 5.762 21 C -0.228 4.228 22 H 0.065 0.935 23 C -0.054 4.054 24 N -0.980 5.980 25 Si 0.941 3.059 26 H -0.279 1.279 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.123 3.877 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.037 0.963 47 H 0.361 0.639 48 H 0.258 0.742 49 H 0.055 0.945 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 4.109 -29.066 31.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.027 4.027 4 O 0.038 5.962 5 N -0.077 5.077 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.271 4.271 9 C 0.384 3.616 10 O -0.456 6.456 11 N -0.318 5.318 12 C -0.017 4.017 13 C -0.160 4.160 14 C -0.097 4.097 15 H 0.102 0.898 16 C -0.209 4.209 17 C -0.115 4.115 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.407 5.407 21 C -0.359 4.359 22 H 0.083 0.917 23 C -0.246 4.246 24 N -0.631 5.631 25 Si 0.769 3.231 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.191 1.191 29 C 0.001 3.999 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.748 4.560 -29.635 31.528 hybrid contribution 1.616 -0.437 1.159 2.036 sum -8.133 4.123 -28.476 29.900 Atomic orbital electron populations 1.21832 0.91154 1.04440 1.03087 1.20473 0.98444 0.84003 1.05971 1.25118 0.96568 0.96833 0.84211 1.84514 1.61411 1.17351 1.32939 1.73612 1.18270 0.99250 1.16587 1.25046 1.00032 0.96960 0.88954 1.20323 1.02582 0.91074 0.99695 1.21715 1.14596 0.96504 0.94289 1.17224 0.82175 0.77465 0.84694 1.90847 1.39968 1.45958 1.68826 1.48093 1.12660 1.60430 1.10625 1.22085 0.87556 0.96246 0.95821 1.21945 1.02912 0.96661 0.94476 1.21049 0.93235 0.99381 0.96015 0.89826 1.21982 0.98459 0.98289 1.02164 1.21619 0.99210 0.96807 0.93818 0.92035 1.20871 0.87485 0.97537 0.90527 1.42873 1.06415 1.82221 1.09241 1.19073 0.94680 1.35197 0.86980 0.91700 1.25305 1.00501 1.02209 0.96609 1.69843 1.27364 1.53880 1.11994 0.85627 0.81062 0.77519 0.78870 1.20505 1.21995 1.19118 1.21588 1.01731 0.97632 0.78991 0.89217 0.92564 0.90731 0.86286 0.89423 0.89636 0.87939 0.89835 0.88537 0.89576 0.87313 0.91885 0.92293 0.93196 0.90278 0.95065 0.94483 0.80612 0.93313 0.92596 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.90 71.98 0.71 -0.54 16 2 C -0.05 -0.64 6.38 29.85 0.19 -0.45 16 3 C 0.04 0.69 6.80 25.48 0.17 0.86 16 4 O 0.10 1.97 11.06 76.98 0.85 2.82 16 5 N -0.37 -8.36 12.01 -44.78 -0.54 -8.90 16 6 C 0.05 1.16 7.54 45.15 0.34 1.50 16 7 C -0.08 -1.42 10.49 71.23 0.75 -0.68 16 8 C -0.26 -6.21 4.19 -18.74 -0.08 -6.29 16 9 C 0.60 17.35 7.49 86.66 0.65 17.99 16 10 O -0.58 -22.86 16.52 -4.06 -0.07 -22.93 16 11 N -0.59 -14.06 2.97 -822.88 -2.45 -16.50 16 12 C 0.10 1.57 5.21 86.36 0.45 2.02 16 13 C -0.12 -1.67 5.63 30.67 0.17 -1.50 16 14 C -0.08 -1.43 2.71 -10.76 -0.03 -1.46 16 15 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 16 C -0.15 -2.46 8.11 71.98 0.58 -1.87 16 17 C -0.09 -2.64 2.15 -10.73 -0.02 -2.66 16 18 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 19 C 0.16 5.88 5.19 86.38 0.45 6.33 16 20 N -0.76 -36.47 5.18 -343.44 -1.78 -38.25 16 21 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 22 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 23 C -0.05 -3.30 5.50 84.86 0.47 -2.83 16 24 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 25 Si 0.94 48.71 27.74 68.60 1.90 50.62 16 26 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.29 -15.24 7.11 99.48 0.71 -14.54 16 28 H -0.27 -13.34 6.52 99.48 0.65 -12.69 16 29 C 0.12 3.60 5.05 86.35 0.44 4.04 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.55 6.77 -2.39 -0.02 0.54 16 32 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.37 8.11 -2.39 -0.02 1.35 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.10 1.10 6.04 -2.39 -0.01 1.08 16 39 H 0.09 1.22 6.30 -2.38 -0.02 1.20 16 40 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.93 4.98 -2.39 -0.01 0.92 16 43 H 0.05 0.99 6.58 -2.39 -0.02 0.97 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.04 1.33 6.73 -2.38 -0.02 1.32 16 47 H 0.36 17.40 4.76 -92.72 -0.44 16.95 16 48 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 49 H 0.06 2.16 6.21 -2.39 -0.01 2.14 16 50 H 0.09 2.31 6.69 -2.38 -0.02 2.30 16 Total: -1.00 -78.52 390.24 4.80 -73.72 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.45 Total: 20.96 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.12 Total: 2.10 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -4.46 Total: -127.30 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.78 Total: -20.10 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.90 Total: 50.62 kcal Total: -78.52 4.80 -73.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133301707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.155 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds