Wall clock time and date at job start Tue Mar 31 2020 20:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50705 * 109.46768 * 2 1 4 4 N 1.30007 * 127.33789 * 274.68326 * 3 2 1 5 5 O 1.20660 * 112.30334 * 179.79642 * 4 3 2 6 6 C 1.33493 * 113.15369 * 0.50003 * 5 4 3 7 7 C 1.50699 * 126.82810 * 179.70888 * 6 5 4 8 8 C 1.37362 * 106.34111 * 359.69988 * 6 5 4 9 9 C 1.47403 * 128.56395 * 179.97438 * 8 6 5 10 10 O 1.21602 * 120.00072 * 95.08170 * 9 8 6 11 11 N 1.34776 * 119.99866 * 275.08183 * 9 8 6 12 12 C 1.46929 * 120.63255 * 354.83042 * 11 9 8 13 13 C 1.53624 * 108.54233 * 126.36419 * 12 11 9 14 14 C 1.53044 * 109.24369 * 54.86082 * 13 12 11 15 15 H 1.08999 * 109.45661 * 58.52448 * 14 13 12 16 16 C 1.52993 * 109.45294 * 178.49451 * 14 13 12 17 17 C 1.53047 * 109.53235 * 298.50729 * 14 13 12 18 18 H 1.08998 * 109.49454 * 301.40985 * 17 14 13 19 19 C 1.53003 * 109.51907 * 181.33153 * 17 14 13 20 20 N 1.46503 * 109.46733 * 175.14602 * 19 17 14 21 21 C 1.36930 * 119.99673 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00609 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00128 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00453 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99616 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47094 * 90.00632 * 25 23 21 27 27 H 1.48505 * 109.47378 * 210.00329 * 25 23 21 28 28 H 1.48498 * 109.47473 * 330.00282 * 25 23 21 29 29 C 1.46926 * 120.63187 * 175.10620 * 11 9 8 30 30 H 1.08993 * 109.47195 * 294.99196 * 1 2 3 31 31 H 1.09003 * 109.46820 * 54.99375 * 1 2 3 32 32 H 1.08993 * 109.46468 * 174.99179 * 1 2 3 33 33 H 1.08993 * 109.47232 * 119.99862 * 2 1 3 34 34 H 1.08998 * 109.47051 * 240.00633 * 2 1 3 35 35 H 1.09005 * 109.46800 * 269.99101 * 7 6 5 36 36 H 1.09002 * 109.47463 * 29.99445 * 7 6 5 37 37 H 1.09006 * 109.47043 * 149.99701 * 7 6 5 38 38 H 1.09003 * 109.58460 * 246.20131 * 12 11 9 39 39 H 1.09003 * 109.58674 * 6.62575 * 12 11 9 40 40 H 1.08991 * 109.64090 * 294.86512 * 13 12 11 41 41 H 1.09005 * 109.42938 * 174.72310 * 13 12 11 42 42 H 1.08995 * 109.47520 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.47010 * 300.06004 * 16 14 13 44 44 H 1.09000 * 109.47079 * 60.05758 * 16 14 13 45 45 H 1.09001 * 109.47185 * 295.14293 * 19 17 14 46 46 H 1.09003 * 109.47273 * 55.14546 * 19 17 14 47 47 H 0.96995 * 120.00011 * 359.97438 * 20 19 17 48 48 H 0.97005 * 120.00077 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.58279 * 353.37142 * 29 11 9 50 50 H 1.08991 * 109.58832 * 113.65883 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2156 2.1924 -1.0302 5 8 2.6243 3.2839 -0.7179 6 6 2.7958 3.4233 0.5986 7 6 3.2957 4.6485 1.3197 8 6 2.4257 2.2280 1.1652 9 6 2.4239 1.8477 2.5894 10 8 1.4061 1.9547 3.2460 11 7 3.5505 1.3813 3.1637 12 6 4.7561 1.1396 2.3594 13 6 5.9300 1.8964 2.9991 14 6 6.0595 1.4794 4.4660 15 1 6.2155 0.4023 4.5248 16 6 7.2508 2.2022 5.0978 17 6 4.7798 1.8513 5.2185 18 1 4.6101 2.9251 5.1391 19 6 4.9225 1.4645 6.6920 20 7 3.7460 1.9248 7.4338 21 6 3.6504 1.6906 8.7795 22 1 4.4421 1.1663 9.2941 23 6 2.5355 2.1262 9.4824 24 7 2.4438 1.9016 10.7760 25 14 1.1658 3.0325 8.5924 26 1 0.1639 2.0538 8.0986 27 1 0.5109 3.9819 9.5278 28 1 1.7335 3.7822 7.4431 29 6 3.5946 1.0993 4.6049 30 1 -0.3633 0.4341 0.9314 31 1 -0.3633 0.5896 -0.8418 32 1 -0.3632 -1.0237 -0.0897 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5137 -0.8900 35 1 4.3815 4.6026 1.4041 36 1 3.0120 5.5402 0.7607 37 1 2.8553 4.6887 2.3160 38 1 4.9737 0.0717 2.3391 39 1 4.5964 1.5014 1.3437 40 1 5.7494 2.9696 2.9406 41 1 6.8507 1.6524 2.4690 42 1 7.3436 1.9052 6.1424 43 1 8.1623 1.9375 4.5619 44 1 7.0948 3.2794 5.0394 45 1 5.0046 0.3809 6.7768 46 1 5.8175 1.9301 7.1048 47 1 3.0352 2.3960 6.9718 48 1 1.6648 2.2064 11.2672 49 1 2.6682 1.4347 5.0714 50 1 3.7169 0.0280 4.7641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133324890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:49 Heat of formation + Delta-G solvation = 23.484591 kcal Electronic energy + Delta-G solvation = -30578.991118 eV Core-core repulsion = 26609.388847 eV Total energy + Delta-G solvation = -3969.602271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.13543 -40.34023 -38.13206 -35.59633 -35.19353 -34.00679 -33.70278 -31.98244 -31.59634 -30.29724 -28.79122 -28.02250 -26.23024 -25.06486 -24.20838 -23.10532 -22.83900 -21.18678 -20.52754 -20.09645 -19.27059 -18.13295 -17.80781 -17.39983 -16.63654 -16.15909 -15.37432 -14.96061 -14.90573 -14.58668 -14.44386 -14.15455 -14.08840 -13.84106 -13.65983 -13.54566 -13.27975 -13.12859 -13.08718 -12.81994 -12.77189 -12.57298 -12.07080 -11.90019 -11.88232 -11.79502 -11.75934 -11.31589 -11.13833 -11.05663 -10.92993 -10.71967 -10.44420 -10.31585 -10.22433 -10.10256 -9.97104 -9.57142 -9.53391 -8.88948 -8.71990 -7.21219 -5.75136 -3.10755 1.04099 1.64551 2.27713 2.54073 2.95718 3.42915 3.47485 3.51687 3.74522 3.96551 4.32648 4.53212 4.60822 4.62694 4.69823 4.71515 4.80771 4.93086 4.96105 5.00148 5.01578 5.05117 5.12277 5.23354 5.24543 5.43876 5.48812 5.50919 5.54152 5.56151 5.57183 5.62128 5.65492 5.71099 5.73758 5.78872 5.80489 5.93168 5.95454 6.04482 6.19665 6.27628 6.31074 6.41765 6.67527 6.72834 7.22295 7.95603 7.98458 8.00300 8.43760 9.22768 9.95589 10.14494 11.43118 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003706 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.778622 B = 7553.191311 C = 8633.476365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.058 3.942 4 N -0.355 5.355 5 O 0.095 5.905 6 C 0.015 3.985 7 C -0.080 4.080 8 C -0.241 4.241 9 C 0.595 3.405 10 O -0.519 6.519 11 N -0.599 5.599 12 C 0.108 3.892 13 C -0.128 4.128 14 C -0.084 4.084 15 H 0.074 0.926 16 C -0.149 4.149 17 C -0.106 4.106 18 H 0.074 0.926 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.118 3.882 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.036 0.964 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.098 0.902 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 0.017 -25.580 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.060 5.060 5 O 0.034 5.966 6 C -0.048 4.048 7 C -0.137 4.137 8 C -0.248 4.248 9 C 0.381 3.619 10 O -0.394 6.394 11 N -0.332 5.332 12 C -0.015 4.015 13 C -0.166 4.166 14 C -0.103 4.103 15 H 0.092 0.908 16 C -0.206 4.206 17 C -0.125 4.125 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.003 4.003 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.116 0.884 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.207 -0.136 -26.293 27.016 hybrid contribution -1.003 0.575 0.234 1.180 sum 5.203 0.439 -26.059 26.577 Atomic orbital electron populations 1.21736 0.93352 1.02575 1.02940 1.19994 0.97047 0.87373 1.03956 1.24750 1.00402 0.98770 0.86538 1.73592 1.16586 0.92554 1.23314 1.84532 1.62015 1.27175 1.22918 1.24611 0.98834 0.97585 0.83801 1.20495 1.02345 0.91275 0.99631 1.21908 1.11894 0.95541 0.95497 1.16956 0.83395 0.77339 0.84239 1.90871 1.31774 1.53238 1.63504 1.48106 1.11302 1.64165 1.09663 1.21832 0.84573 1.00510 0.94549 1.22068 0.97554 1.00599 0.96359 1.21085 0.94991 1.00653 0.93553 0.90770 1.21884 0.96685 1.00440 1.01565 1.21784 0.93670 1.00661 0.96398 0.90739 1.20709 0.91024 0.97274 0.87463 1.42768 1.20622 1.69861 1.07018 1.19031 1.04464 1.31258 0.82727 0.89201 1.24644 0.98045 1.00791 0.95394 1.69702 1.30365 1.51786 1.06348 0.86611 0.83285 0.80137 0.78871 1.20861 1.21725 1.20346 1.21809 1.00840 1.00157 0.77480 0.91699 0.92365 0.91343 0.89518 0.89540 0.88632 0.89015 0.88640 0.90955 0.90444 0.91440 0.90664 0.91416 0.93063 0.92758 0.95412 0.94586 0.80591 0.93065 0.88406 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.90 37.16 0.37 -1.04 16 2 C -0.05 -0.44 6.55 -27.88 -0.18 -0.62 16 3 C 0.06 0.67 6.84 -79.77 -0.55 0.13 16 4 N -0.35 -4.26 12.01 34.78 0.42 -3.84 16 5 O 0.10 1.05 11.06 18.65 0.21 1.26 16 6 C 0.02 0.15 7.43 -34.63 -0.26 -0.10 16 7 C -0.08 -0.58 10.33 36.00 0.37 -0.21 16 8 C -0.24 -2.95 4.24 -102.89 -0.44 -3.39 16 9 C 0.60 8.66 7.48 -12.53 -0.09 8.56 16 10 O -0.52 -9.84 16.54 5.28 0.09 -9.75 16 11 N -0.60 -7.55 2.97 -173.77 -0.52 -8.06 16 12 C 0.11 0.99 6.38 -3.48 -0.02 0.96 16 13 C -0.13 -1.06 5.38 -26.38 -0.14 -1.20 16 14 C -0.08 -0.87 2.23 -90.58 -0.20 -1.08 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.15 -1.50 8.81 37.15 0.33 -1.17 16 17 C -0.11 -1.49 1.92 -90.49 -0.17 -1.66 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 19 C 0.16 2.96 5.41 -4.04 -0.02 2.93 16 20 N -0.76 -17.82 5.18 -59.90 -0.31 -18.13 16 21 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 22 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 25 Si 0.88 22.92 27.74 -169.99 -4.71 18.20 16 26 H -0.28 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 29 C 0.12 1.76 5.50 -3.71 -0.02 1.74 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.66 6.24 -51.93 -0.32 0.34 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 47 H 0.36 8.54 4.75 -40.82 -0.19 8.35 16 48 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 49 H 0.10 1.80 6.23 -51.92 -0.32 1.48 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -34.65 398.97 -7.59 -42.24 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.26 Total: 4.03 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.28 Total: -3.13 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.37 Total: -58.86 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.29 Total: -8.50 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.65 -7.59 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133324890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.720 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds