Wall clock time and date at job start Tue Mar 31 2020 20:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50705 * 109.46768 * 2 1 4 4 N 1.30007 * 127.33789 * 274.68326 * 3 2 1 5 5 O 1.20660 * 112.30334 * 179.79642 * 4 3 2 6 6 C 1.33493 * 113.15369 * 0.50003 * 5 4 3 7 7 C 1.50699 * 126.82810 * 179.70888 * 6 5 4 8 8 C 1.37362 * 106.34111 * 359.69988 * 6 5 4 9 9 C 1.47403 * 128.56395 * 179.97438 * 8 6 5 10 10 O 1.21602 * 120.00072 * 95.08170 * 9 8 6 11 11 N 1.34776 * 119.99866 * 275.08183 * 9 8 6 12 12 C 1.46929 * 120.63255 * 354.83042 * 11 9 8 13 13 C 1.53624 * 108.54233 * 126.36419 * 12 11 9 14 14 C 1.53044 * 109.24369 * 54.86082 * 13 12 11 15 15 H 1.08999 * 109.45661 * 58.52448 * 14 13 12 16 16 C 1.52993 * 109.45294 * 178.49451 * 14 13 12 17 17 C 1.53047 * 109.53235 * 298.50729 * 14 13 12 18 18 H 1.08998 * 109.49454 * 301.40985 * 17 14 13 19 19 C 1.53003 * 109.51907 * 181.33153 * 17 14 13 20 20 N 1.46503 * 109.46733 * 175.14602 * 19 17 14 21 21 C 1.36930 * 119.99673 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00609 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00128 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00453 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99616 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47094 * 90.00632 * 25 23 21 27 27 H 1.48505 * 109.47378 * 210.00329 * 25 23 21 28 28 H 1.48498 * 109.47473 * 330.00282 * 25 23 21 29 29 C 1.46926 * 120.63187 * 175.10620 * 11 9 8 30 30 H 1.08993 * 109.47195 * 294.99196 * 1 2 3 31 31 H 1.09003 * 109.46820 * 54.99375 * 1 2 3 32 32 H 1.08993 * 109.46468 * 174.99179 * 1 2 3 33 33 H 1.08993 * 109.47232 * 119.99862 * 2 1 3 34 34 H 1.08998 * 109.47051 * 240.00633 * 2 1 3 35 35 H 1.09005 * 109.46800 * 269.99101 * 7 6 5 36 36 H 1.09002 * 109.47463 * 29.99445 * 7 6 5 37 37 H 1.09006 * 109.47043 * 149.99701 * 7 6 5 38 38 H 1.09003 * 109.58460 * 246.20131 * 12 11 9 39 39 H 1.09003 * 109.58674 * 6.62575 * 12 11 9 40 40 H 1.08991 * 109.64090 * 294.86512 * 13 12 11 41 41 H 1.09005 * 109.42938 * 174.72310 * 13 12 11 42 42 H 1.08995 * 109.47520 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.47010 * 300.06004 * 16 14 13 44 44 H 1.09000 * 109.47079 * 60.05758 * 16 14 13 45 45 H 1.09001 * 109.47185 * 295.14293 * 19 17 14 46 46 H 1.09003 * 109.47273 * 55.14546 * 19 17 14 47 47 H 0.96995 * 120.00011 * 359.97438 * 20 19 17 48 48 H 0.97005 * 120.00077 * 179.97438 * 24 23 21 49 49 H 1.09007 * 109.58279 * 353.37142 * 29 11 9 50 50 H 1.08991 * 109.58832 * 113.65883 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2156 2.1924 -1.0302 5 8 2.6243 3.2839 -0.7179 6 6 2.7958 3.4233 0.5986 7 6 3.2957 4.6485 1.3197 8 6 2.4257 2.2280 1.1652 9 6 2.4239 1.8477 2.5894 10 8 1.4061 1.9547 3.2460 11 7 3.5505 1.3813 3.1637 12 6 4.7561 1.1396 2.3594 13 6 5.9300 1.8964 2.9991 14 6 6.0595 1.4794 4.4660 15 1 6.2155 0.4023 4.5248 16 6 7.2508 2.2022 5.0978 17 6 4.7798 1.8513 5.2185 18 1 4.6101 2.9251 5.1391 19 6 4.9225 1.4645 6.6920 20 7 3.7460 1.9248 7.4338 21 6 3.6504 1.6906 8.7795 22 1 4.4421 1.1663 9.2941 23 6 2.5355 2.1262 9.4824 24 7 2.4438 1.9016 10.7760 25 14 1.1658 3.0325 8.5924 26 1 0.1639 2.0538 8.0986 27 1 0.5109 3.9819 9.5278 28 1 1.7335 3.7822 7.4431 29 6 3.5946 1.0993 4.6049 30 1 -0.3633 0.4341 0.9314 31 1 -0.3633 0.5896 -0.8418 32 1 -0.3632 -1.0237 -0.0897 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5137 -0.8900 35 1 4.3815 4.6026 1.4041 36 1 3.0120 5.5402 0.7607 37 1 2.8553 4.6887 2.3160 38 1 4.9737 0.0717 2.3391 39 1 4.5964 1.5014 1.3437 40 1 5.7494 2.9696 2.9406 41 1 6.8507 1.6524 2.4690 42 1 7.3436 1.9052 6.1424 43 1 8.1623 1.9375 4.5619 44 1 7.0948 3.2794 5.0394 45 1 5.0046 0.3809 6.7768 46 1 5.8175 1.9301 7.1048 47 1 3.0352 2.3960 6.9718 48 1 1.6648 2.2064 11.2672 49 1 2.6682 1.4347 5.0714 50 1 3.7169 0.0280 4.7641 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133324890.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:48 Heat of formation + Delta-G solvation = 1.658958 kcal Electronic energy + Delta-G solvation = -30579.937549 eV Core-core repulsion = 26609.388847 eV Total energy + Delta-G solvation = -3970.548702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.99571 -41.40802 -39.27177 -36.79544 -36.39350 -35.21091 -34.57681 -33.69580 -32.43782 -31.84012 -29.63648 -28.87386 -27.65096 -26.04018 -25.09868 -24.60502 -23.83420 -22.57418 -21.54851 -21.04226 -20.21012 -19.64567 -18.98194 -18.57193 -17.66391 -17.15275 -16.73040 -16.36742 -15.94640 -15.80783 -15.43630 -15.34983 -15.19481 -14.92157 -14.69684 -14.49342 -14.30470 -14.21821 -14.12942 -13.98596 -13.76314 -13.56695 -13.39913 -13.23729 -12.88673 -12.67234 -12.66274 -12.63198 -12.57534 -12.22074 -12.06712 -11.92002 -11.88443 -11.81339 -11.47425 -11.26454 -11.22277 -11.01121 -10.95473 -10.40435 -9.79560 -9.29028 -8.05899 -5.37247 0.21705 0.76690 1.20494 1.32468 1.37091 1.40566 1.62980 2.04987 2.43283 2.92362 3.17001 3.26677 3.42831 3.53459 3.74668 3.77615 3.86865 3.96797 4.01729 4.04559 4.18516 4.22220 4.25584 4.29341 4.36860 4.49863 4.53702 4.56904 4.61517 4.72044 4.76823 4.78558 4.80083 4.84428 4.92446 4.93752 4.97480 5.01717 5.07252 5.13855 5.16304 5.21544 5.24450 5.39760 5.50851 5.58279 5.75023 6.19200 6.20480 6.90412 7.05736 7.12035 7.83447 7.99405 9.15815 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.003706 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.778622 B = 7553.191311 C = 8633.476365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.057 3.943 4 N -0.368 5.368 5 O 0.096 5.904 6 C 0.034 3.966 7 C -0.082 4.082 8 C -0.267 4.267 9 C 0.598 3.402 10 O -0.575 6.575 11 N -0.591 5.591 12 C 0.104 3.896 13 C -0.119 4.119 14 C -0.078 4.078 15 H 0.082 0.918 16 C -0.146 4.146 17 C -0.091 4.091 18 H 0.066 0.934 19 C 0.158 3.842 20 N -0.761 5.761 21 C -0.228 4.228 22 H 0.064 0.936 23 C -0.055 4.055 24 N -0.980 5.980 25 Si 0.942 3.058 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.261 1.261 29 C 0.122 3.878 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.361 0.639 48 H 0.258 0.742 49 H 0.057 0.943 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.759 0.470 -28.918 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.106 4.106 4 N -0.075 5.075 5 O 0.036 5.964 6 C -0.029 4.029 7 C -0.139 4.139 8 C -0.274 4.274 9 C 0.385 3.615 10 O -0.455 6.455 11 N -0.322 5.322 12 C -0.017 4.017 13 C -0.157 4.157 14 C -0.097 4.097 15 H 0.101 0.899 16 C -0.203 4.203 17 C -0.111 4.111 18 H 0.084 0.916 19 C 0.032 3.968 20 N -0.407 5.407 21 C -0.359 4.359 22 H 0.082 0.918 23 C -0.247 4.247 24 N -0.631 5.631 25 Si 0.770 3.230 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.186 1.186 29 C -0.001 4.001 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.194 0.806 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.181 0.317 -29.699 30.807 hybrid contribution -1.483 0.378 1.263 1.984 sum 6.697 0.695 -28.436 29.223 Atomic orbital electron populations 1.21704 0.93543 1.03589 1.01409 1.20102 0.96822 0.86629 1.04937 1.25037 0.99902 0.99471 0.86170 1.73585 1.17416 0.92925 1.23554 1.84525 1.61870 1.26877 1.23100 1.25082 0.96805 0.97614 0.83427 1.20696 1.03778 0.90797 0.98610 1.21713 1.14438 0.96917 0.94354 1.17230 0.82916 0.76505 0.84879 1.90838 1.33870 1.55755 1.64992 1.48129 1.12144 1.62995 1.08896 1.22129 0.83125 1.01874 0.94557 1.22051 0.98450 1.00661 0.94561 1.21072 0.92709 1.01305 0.94588 0.89924 1.21857 0.97534 1.00262 1.00696 1.21636 0.95635 0.99892 0.93931 0.91564 1.20932 0.89004 0.97097 0.89728 1.42856 1.22376 1.69857 1.05595 1.19075 1.03105 1.29068 0.84663 0.91754 1.25317 1.00635 1.02683 0.96067 1.69847 1.31295 1.53986 1.08010 0.85613 0.80303 0.78928 0.78112 1.21352 1.21734 1.18588 1.21584 0.99236 1.00325 0.78917 0.94259 0.92535 0.89313 0.89524 0.87459 0.85930 0.86710 0.90185 0.89322 0.89270 0.91070 0.87386 0.93341 0.90509 0.92885 0.95323 0.94124 0.80598 0.93321 0.92393 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.90 71.99 0.71 -1.94 16 2 C -0.05 -0.83 6.55 29.85 0.20 -0.64 16 3 C 0.06 1.24 6.84 45.16 0.31 1.55 16 4 N -0.37 -8.18 12.01 -44.78 -0.54 -8.71 16 5 O 0.10 1.91 11.06 76.98 0.85 2.77 16 6 C 0.03 0.63 7.43 25.48 0.19 0.82 16 7 C -0.08 -0.96 10.33 71.24 0.74 -0.22 16 8 C -0.27 -6.21 4.24 -18.74 -0.08 -6.28 16 9 C 0.60 17.20 7.48 86.66 0.65 17.84 16 10 O -0.57 -22.55 16.54 -4.04 -0.07 -22.62 16 11 N -0.59 -14.07 2.97 -821.96 -2.44 -16.51 16 12 C 0.10 1.54 6.38 86.51 0.55 2.10 16 13 C -0.12 -1.46 5.38 30.82 0.17 -1.30 16 14 C -0.08 -1.38 2.23 -10.77 -0.02 -1.40 16 15 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 16 C -0.15 -2.50 8.81 71.98 0.63 -1.86 16 17 C -0.09 -2.46 1.92 -10.71 -0.02 -2.48 16 18 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 19 C 0.16 5.68 5.41 86.38 0.47 6.15 16 20 N -0.76 -36.07 5.18 -343.44 -1.78 -37.85 16 21 C -0.23 -13.17 10.47 84.04 0.88 -12.29 16 22 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 23 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 24 N -0.98 -63.87 13.97 21.65 0.30 -63.57 16 25 Si 0.94 48.44 27.74 68.60 1.90 50.34 16 26 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 27 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.26 -12.52 6.52 99.48 0.65 -11.87 16 29 C 0.12 3.56 5.50 86.36 0.48 4.03 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.26 8.11 -2.38 -0.02 1.24 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.19 6.24 -2.39 -0.01 1.18 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 1.02 6.30 -2.39 -0.02 1.00 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 1.46 6.15 -2.39 -0.01 1.44 16 47 H 0.36 17.14 4.75 -92.71 -0.44 16.70 16 48 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 49 H 0.06 2.19 6.23 -2.38 -0.01 2.17 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.54 398.97 4.98 -73.56 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.44 Total: 21.40 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 6.31 Total: 1.21 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -4.45 Total: -126.65 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.78 Total: -19.85 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.90 Total: 50.34 kcal Total: -78.54 4.98 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133324890.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.215 kcal (2) G-P(sol) polarization free energy of solvation -78.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds