Wall clock time and date at job start Tue Mar 31 2020 19:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47544 * 2 1 4 4 C 1.50695 * 110.43424 * 300.42925 * 3 2 1 5 5 O 1.21280 * 120.00117 * 125.08648 * 4 3 2 6 6 N 1.34778 * 119.99718 * 305.08405 * 4 3 2 7 7 C 1.46506 * 119.99914 * 184.91815 * 6 4 3 8 8 C 1.52991 * 109.47037 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47120 * 179.97438 * 8 7 6 10 10 C 1.29457 * 117.69109 * 95.00579 * 9 8 7 11 11 C 1.50325 * 123.65407 * 180.88464 * 10 9 8 12 12 N 1.47016 * 109.16076 * 349.02011 * 11 10 9 13 13 C 1.36940 * 121.36932 * 222.67601 * 12 11 10 14 14 H 1.07997 * 119.99871 * 146.74095 * 13 12 11 15 15 C 1.38806 * 120.00001 * 326.73719 * 13 12 11 16 16 N 1.31621 * 119.99912 * 164.51993 * 15 13 12 17 17 Si 1.86799 * 120.00478 * 344.51603 * 15 13 12 18 18 H 1.48503 * 109.46991 * 88.84477 * 17 15 13 19 19 H 1.48493 * 109.47485 * 208.84466 * 17 15 13 20 20 H 1.48505 * 109.46784 * 328.85033 * 17 15 13 21 21 C 1.47333 * 117.25114 * 42.94528 * 12 11 10 22 22 C 1.49961 * 117.69838 * 275.02325 * 9 8 7 23 23 C 1.54631 * 110.48739 * 177.88338 * 3 2 1 24 24 C 1.54684 * 101.66965 * 265.90400 * 23 3 2 25 25 N 1.46761 * 105.53753 * 334.74183 * 24 23 3 26 26 C 1.34418 * 111.30222 * 16.92393 * 25 24 23 27 27 O 1.21279 * 124.94722 * 179.55554 * 26 25 24 28 28 H 1.09005 * 109.46902 * 62.04082 * 1 2 3 29 29 H 1.08994 * 109.47432 * 182.04716 * 1 2 3 30 30 H 1.09009 * 109.47125 * 302.04835 * 1 2 3 31 31 H 1.08994 * 109.47033 * 239.99667 * 2 1 3 32 32 H 1.09004 * 109.46888 * 120.00385 * 2 1 3 33 33 H 0.96996 * 120.00223 * 4.91567 * 6 4 3 34 34 H 1.09005 * 109.46726 * 59.99892 * 7 6 4 35 35 H 1.08997 * 109.47009 * 300.00732 * 7 6 4 36 36 H 1.09005 * 109.47337 * 60.00405 * 8 7 6 37 37 H 1.08997 * 109.47932 * 300.00305 * 8 7 6 38 38 H 1.07996 * 118.17519 * 0.85358 * 10 9 8 39 39 H 1.08992 * 109.52155 * 229.11802 * 11 10 9 40 40 H 1.08998 * 109.57559 * 108.95234 * 11 10 9 41 41 H 0.96995 * 120.00082 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.77700 * 57.81323 * 21 12 11 43 43 H 1.08998 * 109.78037 * 178.61477 * 21 12 11 44 44 H 1.08997 * 109.31709 * 281.26637 * 22 9 8 45 45 H 1.09002 * 109.31547 * 40.88535 * 22 9 8 46 46 H 1.08995 * 110.96831 * 24.10757 * 23 3 2 47 47 H 1.09005 * 110.96465 * 147.86929 * 23 3 2 48 48 H 1.09000 * 110.29695 * 215.67696 * 24 23 3 49 49 H 1.09007 * 110.14116 * 93.72078 * 24 23 3 50 50 H 0.97005 * 124.35355 * 196.93805 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5412 2.1769 -1.2176 5 8 0.9310 3.2173 -1.0906 6 7 1.7731 1.6776 -2.4478 7 6 1.3839 2.4434 -3.6346 8 6 1.7568 1.6579 -4.8933 9 6 1.3559 2.4453 -6.1141 10 6 2.2555 3.1911 -6.6712 11 6 1.9969 4.0458 -7.8805 12 7 0.6891 3.6916 -8.4510 13 6 0.5118 3.5649 -9.8029 14 1 -0.1899 2.8409 -10.1900 15 6 1.2340 4.3669 -10.6758 16 7 1.3031 4.0542 -11.9525 17 14 2.1078 5.8901 -10.0388 18 1 3.4774 5.5258 -9.5950 19 1 2.1913 6.9023 -11.1220 20 1 1.3494 6.4527 -8.8926 21 6 -0.4243 3.4847 -7.5085 22 6 -0.0572 2.3102 -6.5976 23 6 3.5852 1.4701 0.0535 24 6 3.8433 1.6025 1.5729 25 7 2.6392 2.2365 2.1224 26 6 1.6093 2.1564 1.2624 27 8 0.4965 2.5923 1.4686 28 1 -0.3633 0.4818 -0.9078 29 1 -0.3634 -1.0269 0.0367 30 1 -0.3634 0.5454 0.8711 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.1978 0.8112 -2.5475 34 1 1.9052 3.4007 -3.6363 35 1 0.3077 2.6158 -3.6188 36 1 1.2359 0.7004 -4.8918 37 1 2.8330 1.4858 -4.9088 38 1 3.2470 3.2000 -6.2431 39 1 2.7767 3.8730 -8.6221 40 1 1.9956 5.0967 -7.5913 41 1 1.8080 4.6144 -12.5624 42 1 -0.5727 4.3834 -6.9099 43 1 -1.3358 3.2532 -8.0596 44 1 -0.1608 1.3776 -7.1524 45 1 -0.7316 2.2971 -5.7414 46 1 4.0056 0.5432 -0.3364 47 1 3.9787 2.3322 -0.4852 48 1 4.7162 2.2293 1.7549 49 1 3.9867 0.6171 2.0165 50 1 2.5926 2.6593 2.9943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160399591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:04 Heat of formation + Delta-G solvation = -38.402479 kcal Electronic energy + Delta-G solvation = -29382.521891 eV Core-core repulsion = 25410.235995 eV Total energy + Delta-G solvation = -3972.285896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65032 -39.18709 -38.13609 -36.83310 -35.56517 -34.70624 -33.49471 -31.57965 -30.70742 -30.33916 -29.11958 -27.82489 -25.42020 -23.46079 -23.43810 -23.07556 -22.59915 -21.75121 -21.04299 -19.63116 -17.97821 -17.80476 -17.07536 -16.63561 -16.16177 -15.83853 -15.63844 -15.37271 -15.02355 -14.75910 -14.58272 -14.27280 -14.01877 -13.89451 -13.68262 -13.57910 -13.50164 -13.30477 -12.84878 -12.72539 -12.50268 -12.39506 -12.26916 -12.11949 -11.82963 -11.67487 -11.58554 -11.39987 -11.29052 -11.19141 -10.72222 -10.34689 -10.24436 -10.08011 -9.99161 -9.73509 -9.56343 -9.51979 -9.23235 -8.61869 -8.27595 -6.86667 -5.94461 -3.37524 2.15735 2.38615 2.59915 2.80431 3.12548 3.32978 3.48252 3.52025 3.64177 3.81862 4.11262 4.31558 4.43848 4.53752 4.66364 4.76522 4.90026 4.94712 4.95549 4.97707 5.06350 5.14430 5.16445 5.21716 5.35736 5.38304 5.49406 5.50572 5.61254 5.63411 5.82993 5.90835 5.97288 6.01669 6.04441 6.20614 6.24891 6.27972 6.35254 6.44522 6.54109 6.57002 6.65814 6.82030 7.09993 7.24036 7.46694 7.88201 8.01406 8.01860 8.36291 8.94121 9.71666 10.15228 11.21856 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024636 B = 0.002199 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.293296 B =12729.717055 C =13055.978104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.118 4.118 4 C 0.532 3.468 5 O -0.514 6.514 6 N -0.726 5.726 7 C 0.124 3.876 8 C -0.093 4.093 9 C -0.123 4.123 10 C -0.150 4.150 11 C 0.149 3.851 12 N -0.607 5.607 13 C -0.256 4.256 14 H 0.084 0.916 15 C 0.026 3.974 16 N -0.912 5.912 17 Si 0.887 3.113 18 H -0.286 1.286 19 H -0.302 1.302 20 H -0.271 1.271 21 C 0.144 3.856 22 C -0.096 4.096 23 C -0.125 4.125 24 C 0.103 3.897 25 N -0.736 5.736 26 C 0.542 3.458 27 O -0.496 6.496 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 -11.372 28.810 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.137 4.137 3 C -0.125 4.125 4 C 0.315 3.685 5 O -0.388 6.388 6 N -0.379 5.379 7 C 0.002 3.998 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.169 4.169 11 C 0.024 3.976 12 N -0.332 5.332 13 C -0.385 4.385 14 H 0.101 0.899 15 C -0.173 4.173 16 N -0.555 5.555 17 Si 0.717 3.283 18 H -0.214 1.214 19 H -0.230 1.230 20 H -0.196 1.196 21 C 0.018 3.982 22 C -0.134 4.134 23 C -0.163 4.163 24 C -0.021 4.021 25 N -0.393 5.393 26 C 0.325 3.675 27 O -0.368 6.368 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.120 0.880 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.977 -10.352 28.689 31.287 hybrid contribution 1.052 0.591 0.549 1.326 sum 8.029 -9.761 29.238 31.852 Atomic orbital electron populations 1.21897 0.94213 1.02245 1.03728 1.21456 0.97629 0.91062 1.03532 1.21745 0.97882 0.98572 0.94346 1.19665 0.79673 0.85458 0.83672 1.90814 1.38584 1.23427 1.85973 1.45977 1.63299 1.23115 1.05498 1.21440 1.01198 0.94825 0.82385 1.20923 1.01282 0.98609 0.92267 1.20313 0.96693 0.99329 0.96007 1.22635 0.97852 0.98165 0.98272 1.20269 0.89592 0.95041 0.92720 1.44398 1.03006 1.82775 1.03002 1.18848 1.24862 1.15767 0.79005 0.89882 1.25437 0.99109 0.97872 0.94907 1.69790 1.43452 1.39066 1.03143 0.86880 0.79340 0.84519 0.77542 1.21351 1.23030 1.19591 1.21037 0.91617 0.94262 0.91277 1.20793 0.92665 1.01122 0.98853 1.22801 0.91971 1.04971 0.96514 1.22079 0.88168 0.98640 0.93243 1.46095 1.12210 1.60421 1.20585 1.19924 0.84438 0.78430 0.84665 1.90780 1.20901 1.46999 1.78097 0.92195 0.91909 0.91290 0.90153 0.90388 0.76733 0.91333 0.91005 0.91000 0.91264 0.88511 0.90422 0.94757 0.92730 0.95490 0.91504 0.91239 0.92275 0.87980 0.89271 0.89786 0.90597 0.74757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.41 37.15 0.35 -1.05 16 2 C -0.10 -0.59 4.80 -26.74 -0.13 -0.71 16 3 C -0.12 -0.96 0.51 -155.67 -0.08 -1.04 16 4 C 0.53 6.21 5.24 -10.99 -0.06 6.15 16 5 O -0.51 -8.80 15.48 -12.57 -0.19 -9.00 16 6 N -0.73 -6.70 5.47 -60.30 -0.33 -7.03 16 7 C 0.12 1.44 5.66 -4.04 -0.02 1.42 16 8 C -0.09 -1.04 5.32 -27.89 -0.15 -1.19 16 9 C -0.12 -1.92 5.11 -100.99 -0.52 -2.44 16 10 C -0.15 -2.63 9.47 -35.78 -0.34 -2.97 16 11 C 0.15 3.27 4.42 -5.09 -0.02 3.25 16 12 N -0.61 -14.69 2.69 -173.68 -0.47 -15.16 16 13 C -0.26 -7.24 10.08 -15.06 -0.15 -7.40 16 14 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 15 C 0.03 0.76 5.30 -17.43 -0.09 0.66 16 16 N -0.91 -28.09 13.97 55.49 0.78 -27.31 16 17 Si 0.89 22.62 24.25 -169.99 -4.12 18.49 16 18 H -0.29 -6.97 6.73 56.52 0.38 -6.59 16 19 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 20 H -0.27 -6.84 6.57 56.52 0.37 -6.47 16 21 C 0.14 2.90 6.58 -3.53 -0.02 2.87 16 22 C -0.10 -1.58 5.94 -28.19 -0.17 -1.75 16 23 C -0.12 -0.54 6.24 -24.99 -0.16 -0.70 16 24 C 0.10 0.35 7.79 -3.01 -0.02 0.32 16 25 N -0.74 -4.96 6.24 -59.09 -0.37 -5.33 16 26 C 0.54 5.93 6.33 -10.86 -0.07 5.87 16 27 O -0.50 -7.79 15.66 -12.57 -0.20 -7.99 16 28 H 0.06 0.62 7.33 -51.93 -0.38 0.23 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.75 6.36 -51.92 -0.33 0.42 16 31 H 0.08 0.29 7.30 -51.93 -0.38 -0.09 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.40 2.36 7.55 -40.82 -0.31 2.05 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 37 H 0.07 0.69 7.78 -51.93 -0.40 0.28 16 38 H 0.10 1.44 7.73 -52.49 -0.41 1.04 16 39 H 0.08 1.83 5.91 -51.93 -0.31 1.53 16 40 H 0.04 0.78 6.13 -51.93 -0.32 0.46 16 41 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 46 H 0.10 0.15 7.90 -51.93 -0.41 -0.26 16 47 H 0.09 0.47 7.91 -51.93 -0.41 0.06 16 48 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 50 H 0.41 2.20 8.96 -40.82 -0.37 1.83 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -37.85 388.85 -8.96 -46.80 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.26 Total: -0.65 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.65 Total: 1.31 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.39 Total: -54.83 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.39 Total: -16.98 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.12 Total: 18.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.85 -8.96 -46.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160399591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.401 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds