Wall clock time and date at job start Tue Mar 31 2020 19:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47009 * 2 1 4 4 C 1.38027 * 119.51002 * 125.25468 * 3 2 1 5 5 C 1.39928 * 119.12702 * 180.23149 * 4 3 2 6 6 C 1.48169 * 120.89006 * 179.79769 * 5 4 3 7 7 O 1.21513 * 119.99903 * 359.71634 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.71341 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 H 1.08999 * 109.47480 * 35.27807 * 9 8 6 11 11 C 1.52999 * 109.47136 * 275.27771 * 9 8 6 12 12 C 1.52999 * 109.47493 * 155.28120 * 9 8 6 13 13 C 1.53008 * 109.46593 * 295.00052 * 12 9 8 14 14 C 1.53002 * 109.47094 * 179.97438 * 13 12 9 15 15 C 1.52998 * 109.47068 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46758 * 180.02562 * 15 14 13 17 17 C 1.36937 * 119.99596 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99977 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99847 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00091 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47367 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47370 * 119.99929 * 21 19 17 24 24 H 1.48506 * 109.46909 * 239.99777 * 21 19 17 25 25 C 1.39612 * 118.22148 * 359.52160 * 5 4 3 26 26 C 1.38857 * 118.94496 * 0.24847 * 25 5 4 27 27 O 1.35685 * 119.61962 * 180.02562 * 26 25 5 28 28 N 1.31871 * 119.51495 * 304.99896 * 3 2 1 29 29 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47322 * 300.00332 * 1 2 3 31 31 H 1.08999 * 109.46973 * 60.00208 * 1 2 3 32 32 H 1.08989 * 109.47447 * 239.99896 * 2 1 3 33 33 H 1.08999 * 109.46973 * 119.99792 * 2 1 3 34 34 H 1.07998 * 120.43693 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.47500 * 299.99940 * 11 9 8 37 37 H 1.08999 * 109.47488 * 60.00276 * 11 9 8 38 38 H 1.09005 * 109.47368 * 180.02562 * 11 9 8 39 39 H 1.08998 * 109.47257 * 54.99513 * 12 9 8 40 40 H 1.08993 * 109.47436 * 175.00131 * 12 9 8 41 41 H 1.08998 * 109.46879 * 299.99693 * 13 12 9 42 42 H 1.09001 * 109.47112 * 59.99648 * 13 12 9 43 43 H 1.09003 * 109.47046 * 300.00184 * 14 13 12 44 44 H 1.09002 * 109.46848 * 59.99557 * 14 13 12 45 45 H 1.08998 * 109.46809 * 300.00061 * 15 14 13 46 46 H 1.08993 * 109.47261 * 60.00298 * 15 14 13 47 47 H 0.96997 * 120.00337 * 359.97438 * 16 15 14 48 48 H 0.97005 * 119.99713 * 179.97438 * 20 19 17 49 49 H 1.08000 * 120.53023 * 180.27645 * 25 5 4 50 50 H 0.96695 * 114.00214 * 90.00781 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8307 0.9809 5 6 3.3701 3.1531 0.9761 6 6 4.3121 3.6359 2.0129 7 8 4.6936 2.8815 2.8858 8 7 4.7458 4.9117 1.9878 9 6 5.6724 5.3907 3.0165 10 1 6.3565 4.5880 3.2915 11 6 4.8816 5.8318 4.2498 12 6 6.4706 6.5768 2.4716 13 6 7.3564 6.1074 1.3157 14 6 8.1542 7.2936 0.7703 15 6 9.0396 6.8243 -0.3859 16 7 9.8039 7.9600 -0.9077 17 6 10.6706 7.7799 -1.9524 18 1 10.7904 6.8007 -2.3920 19 6 11.3945 8.8560 -2.4472 20 7 11.2474 10.0497 -1.9125 21 14 12.5762 8.6104 -3.8729 22 1 12.5583 7.1856 -4.2910 23 1 12.1612 9.4666 -5.0131 24 1 13.9493 8.9837 -3.4476 25 6 2.9199 4.0038 -0.0352 26 6 2.0379 3.5089 -0.9866 27 8 1.5920 4.3235 -1.9758 28 7 1.6283 2.2527 -0.9401 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2414 1.1408 1.7440 35 1 4.4410 5.5140 1.2912 36 1 4.1974 6.6346 3.9748 37 1 4.3129 4.9869 4.6381 38 1 5.5710 6.1886 5.0150 39 1 5.7835 7.3439 2.1144 40 1 7.0953 6.9891 3.2639 41 1 8.0436 5.3404 1.6729 42 1 6.7317 5.6951 0.5234 43 1 7.4668 8.0604 0.4131 44 1 8.7789 7.7063 1.5625 45 1 9.7269 6.0574 -0.0290 46 1 8.4145 6.4120 -1.1779 47 1 9.6961 8.8396 -0.5131 48 1 11.7535 10.8016 -2.2580 49 1 3.2526 5.0304 -0.0771 50 1 2.1447 4.3179 -2.7691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171816617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:39 Heat of formation + Delta-G solvation = -83.717016 kcal Electronic energy + Delta-G solvation = -27929.970979 eV Core-core repulsion = 23955.720097 eV Total energy + Delta-G solvation = -3974.250882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98781 -40.65240 -38.38896 -38.01196 -36.86130 -35.22074 -34.71612 -33.50108 -32.78662 -31.57025 -30.38161 -28.82974 -26.42793 -25.89409 -24.94115 -23.76451 -23.33000 -22.05894 -21.82381 -21.42878 -19.84902 -19.13268 -18.34297 -18.04308 -17.14940 -16.79956 -16.69488 -16.53840 -16.24545 -16.07665 -15.63017 -15.40352 -15.27425 -15.08461 -14.97563 -14.57055 -14.27790 -14.10249 -14.06540 -13.38221 -13.26091 -13.05703 -13.00205 -12.90810 -12.86778 -12.80229 -12.47342 -12.37779 -12.30502 -12.11990 -11.96685 -11.89768 -11.83235 -11.54578 -11.41626 -11.36110 -11.05151 -10.95757 -10.54476 -10.18322 -9.93007 -9.02153 -7.97726 -5.26811 -0.48226 -0.15366 1.46135 1.47032 1.57291 1.67766 1.93935 2.42349 2.54276 2.65595 3.32152 3.35798 3.43943 3.61159 3.82476 3.85420 4.00402 4.04387 4.11817 4.15183 4.23178 4.34238 4.37696 4.40050 4.44131 4.59285 4.64257 4.66172 4.74854 4.78549 4.86327 4.88353 4.92654 4.98207 5.01577 5.05306 5.09017 5.17271 5.26460 5.29569 5.31245 5.39958 5.45006 5.45465 5.52257 5.53448 6.25484 6.36780 6.52880 6.80289 7.02020 7.31181 8.08054 8.31174 9.25983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011326 B = 0.002073 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.542591 B =13502.765903 C =15078.252966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C 0.148 3.852 4 C -0.132 4.132 5 C -0.077 4.077 6 C 0.560 3.440 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.143 3.857 10 H 0.075 0.925 11 C -0.159 4.159 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.113 4.113 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.155 4.155 26 C 0.307 3.693 27 O -0.488 6.488 28 N -0.505 5.505 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.012 0.988 46 H 0.018 0.982 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.168 0.832 50 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.461 -16.664 8.650 30.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.011 3.989 4 C -0.152 4.152 5 C -0.088 4.088 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.354 5.354 9 C 0.039 3.961 10 H 0.093 0.907 11 C -0.217 4.217 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.151 4.151 15 C 0.021 3.979 16 N -0.392 5.392 17 C -0.381 4.381 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.804 3.196 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.177 4.177 26 C 0.129 3.871 27 O -0.298 6.298 28 N -0.226 5.226 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.173 0.827 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.030 0.970 46 H 0.036 0.964 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.185 0.815 50 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -24.089 -17.377 8.871 30.999 hybrid contribution 1.572 1.075 -0.825 2.076 sum -22.516 -16.302 8.046 28.939 Atomic orbital electron populations 1.21652 0.93761 1.02799 1.01696 1.20675 0.97246 0.88369 1.04958 1.21391 0.92151 0.96713 0.88669 1.22271 0.97404 0.95634 0.99925 1.20285 0.97801 0.95126 0.95588 1.18246 0.80466 0.82445 0.84144 1.90768 1.58697 1.56361 1.38418 1.45994 1.46944 1.11099 1.31350 1.21075 0.90518 0.96811 0.87661 0.90719 1.22135 1.00970 1.01369 0.97227 1.21864 0.98462 0.96677 0.98520 1.21441 0.98050 0.96863 0.98058 1.21602 0.97969 0.98701 0.96780 1.20864 0.92652 0.89830 0.94529 1.42636 1.49387 1.07949 1.39192 1.19690 1.15519 0.94738 1.08124 0.90865 1.25608 1.02898 0.95385 1.03033 1.69823 1.46431 1.00067 1.45622 0.85053 0.78189 0.77681 0.78708 1.19143 1.21750 1.21904 1.22438 0.97503 1.02395 0.95360 1.19137 0.90752 0.86450 0.90810 1.84754 1.55814 1.60940 1.28324 1.66832 1.24997 1.04280 1.26442 0.90282 0.93360 0.93071 0.88814 0.87930 0.82657 0.74979 0.91158 0.93700 0.90173 0.89663 0.89184 0.92468 0.91612 0.91798 0.92379 0.96964 0.96398 0.79399 0.93911 0.81497 0.71591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.77 71.98 0.70 -0.92 16 2 C -0.07 -0.85 6.33 29.85 0.19 -0.66 16 3 C 0.15 2.51 6.17 42.50 0.26 2.77 16 4 C -0.13 -2.31 9.27 22.63 0.21 -2.10 16 5 C -0.08 -1.40 5.91 -19.90 -0.12 -1.52 16 6 C 0.56 11.54 7.76 86.88 0.67 12.21 16 7 O -0.56 -15.40 16.11 -3.76 -0.06 -15.46 16 8 N -0.70 -11.10 4.49 -445.11 -2.00 -13.09 16 9 C 0.14 2.35 2.57 44.99 0.12 2.47 16 10 H 0.07 1.53 7.58 -2.39 -0.02 1.52 16 11 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 12 C -0.12 -1.83 4.75 30.60 0.15 -1.68 16 13 C -0.11 -2.26 5.10 30.60 0.16 -2.10 16 14 C -0.11 -3.29 5.33 30.59 0.16 -3.13 16 15 C 0.15 5.85 6.26 86.38 0.54 6.39 16 16 N -0.75 -38.64 5.60 -343.46 -1.92 -40.56 16 17 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 18 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 20 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 21 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C -0.16 -2.37 9.55 22.75 0.22 -2.15 16 26 C 0.31 5.44 7.74 84.79 0.66 6.10 16 27 O -0.49 -7.35 13.56 -90.03 -1.22 -8.57 16 28 N -0.50 -9.89 9.87 -297.15 -2.93 -12.82 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.75 7.94 -2.39 -0.02 0.73 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.79 7.86 -2.39 -0.02 0.77 16 34 H 0.16 2.52 7.62 -2.91 -0.02 2.50 16 35 H 0.41 4.62 6.74 -92.71 -0.63 4.00 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.37 20.30 7.67 -92.71 -0.71 19.59 16 48 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 49 H 0.17 1.66 6.53 -2.91 -0.02 1.64 16 50 H 0.42 2.50 9.06 -74.06 -0.67 1.83 16 Total: -1.00 -75.84 415.79 -0.97 -76.81 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -1.05 Total: 27.86 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.90 Total: -3.26 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -6.57 Total: -125.66 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.28 Total: -24.03 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.84 -0.97 -76.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171816617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.909 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds