Wall clock time and date at job start Tue Mar 31 2020 19:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47289 * 2 1 4 4 C 1.38345 * 120.27151 * 90.00191 * 3 2 1 5 5 N 1.31885 * 121.18795 * 179.97438 * 4 3 2 6 6 C 1.32239 * 121.79903 * 0.02727 * 5 4 3 7 7 O 1.35423 * 119.79867 * 180.02562 * 6 5 4 8 8 C 1.40280 * 120.39907 * 0.02562 * 6 5 4 9 9 C 1.47529 * 120.59452 * 179.97438 * 8 6 5 10 10 O 1.21585 * 119.99976 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99589 * 180.02562 * 9 8 6 12 12 C 1.46501 * 119.99941 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46828 * 35.00568 * 12 11 9 14 14 C 1.52992 * 109.47432 * 275.00459 * 12 11 9 15 15 C 1.52996 * 109.47377 * 155.00075 * 12 11 9 16 16 C 1.52997 * 109.47131 * 295.00488 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17 21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00579 * 180.02562 * 22 20 19 24 24 Si 1.86811 * 119.99633 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46906 * 90.00102 * 24 22 20 26 26 H 1.48495 * 109.47152 * 210.00270 * 24 22 20 27 27 H 1.48502 * 109.47012 * 330.00516 * 24 22 20 28 28 C 1.38345 * 120.26951 * 270.30068 * 3 2 1 29 29 H 1.08999 * 109.47182 * 59.99864 * 1 2 3 30 30 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46660 * 299.99736 * 1 2 3 32 32 H 1.09000 * 109.46937 * 239.99792 * 2 1 3 33 33 H 1.08999 * 109.47182 * 120.00136 * 2 1 3 34 34 H 1.08004 * 119.40861 * 0.02562 * 4 3 2 35 35 H 0.96698 * 113.99669 * 270.01487 * 7 6 5 36 36 H 0.96999 * 120.00658 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47186 * 59.99610 * 14 12 11 38 38 H 1.08997 * 109.47659 * 179.97438 * 14 12 11 39 39 H 1.09007 * 109.47202 * 299.99880 * 14 12 11 40 40 H 1.08996 * 109.47452 * 175.00488 * 15 12 11 41 41 H 1.09001 * 109.46997 * 55.00062 * 15 12 11 42 42 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 43 43 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 44 44 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 46 46 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 47 47 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 48 48 H 0.97006 * 119.99755 * 359.97438 * 19 18 17 49 49 H 0.97000 * 120.00140 * 180.02562 * 23 22 20 50 50 H 1.07993 * 120.82664 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0782 1.1948 5 7 2.7050 3.3213 1.2159 6 6 2.9432 3.9952 0.1033 7 8 3.3951 5.2699 0.1722 8 6 2.7307 3.3975 -1.1479 9 6 2.9945 4.1454 -2.3919 10 8 3.4003 5.2903 -2.3384 11 7 2.7856 3.5596 -3.5875 12 6 3.0481 4.3020 -4.8228 13 1 3.9065 4.9578 -4.6771 14 6 1.8208 5.1410 -5.1842 15 6 3.3448 3.3179 -5.9561 16 6 4.6422 2.5662 -5.6522 17 6 4.9386 1.5816 -6.7852 18 6 6.2357 0.8294 -6.4810 19 7 6.5192 -0.1137 -7.5655 20 6 7.6372 -0.9027 -7.5122 21 1 8.3103 -0.8293 -6.6707 22 6 7.9061 -1.7959 -8.5401 23 7 8.9804 -2.5546 -8.4885 24 14 6.7423 -1.9224 -9.9959 25 1 7.1637 -0.9661 -11.0509 26 1 6.7763 -3.3044 -10.5382 27 1 5.3618 -1.5971 -9.5558 28 6 2.2590 2.0803 -1.1948 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0836 1.5640 2.1271 35 1 2.6936 5.9352 0.1929 36 1 2.4615 2.6463 -3.6302 37 1 1.6095 5.8422 -4.3768 38 1 2.0162 5.6938 -6.1031 39 1 0.9624 4.4852 -5.3299 40 1 3.4525 3.8644 -6.8930 41 1 2.5241 2.6058 -6.0431 42 1 4.5346 2.0196 -4.7153 43 1 5.4629 3.2783 -5.5652 44 1 4.1179 0.8695 -6.8718 45 1 5.0461 2.1278 -7.7223 46 1 7.0567 1.5412 -6.3941 47 1 6.1277 0.2832 -5.5439 48 1 5.9149 -0.1794 -8.3215 49 1 9.1685 -3.1785 -9.2070 50 1 2.0799 1.5900 -2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175952667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:47 Heat of formation + Delta-G solvation = -53.039530 kcal Electronic energy + Delta-G solvation = -28375.887639 eV Core-core repulsion = 24402.967033 eV Total energy + Delta-G solvation = -3972.920606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32114 -39.63818 -37.77603 -36.96106 -35.43797 -34.71046 -33.61568 -32.86022 -31.33328 -30.46535 -29.52217 -27.80587 -25.37480 -24.49562 -24.25112 -22.84916 -21.77221 -20.99329 -20.88824 -20.74026 -19.20705 -17.83314 -17.64302 -17.43768 -16.45187 -16.33900 -15.31244 -15.21572 -15.07091 -14.71138 -14.51642 -14.45826 -14.22957 -14.14799 -13.66882 -13.59528 -13.34004 -13.14919 -13.07374 -12.75209 -12.65266 -12.47210 -12.20691 -11.94949 -11.86736 -11.70453 -11.52847 -11.49446 -11.20472 -10.91385 -10.86598 -10.46176 -10.41576 -10.35829 -10.35316 -10.11604 -9.75922 -9.58933 -9.38287 -9.17577 -8.89087 -7.22432 -5.76472 -3.11876 0.14688 0.61152 2.51358 2.76316 3.12520 3.36291 3.39137 3.39194 3.44199 4.02001 4.14748 4.24838 4.32471 4.43124 4.58945 4.62974 4.78032 4.78999 4.83183 4.86944 4.97743 5.14585 5.16246 5.26266 5.26905 5.30025 5.34944 5.45787 5.46285 5.51354 5.55454 5.62355 5.68568 5.72685 5.77799 5.82725 5.94987 5.98418 6.04388 6.09984 6.15786 6.27018 6.33965 6.76456 6.80156 7.10628 7.19929 7.42215 7.91111 8.00515 8.42812 9.22207 9.94583 10.14849 11.42120 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.002318 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.159284 B =12075.191483 C =13309.395549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.151 4.151 4 C 0.151 3.849 5 N -0.505 5.505 6 C 0.364 3.636 7 O -0.459 6.459 8 C -0.201 4.201 9 C 0.564 3.436 10 O -0.518 6.518 11 N -0.718 5.718 12 C 0.142 3.858 13 H 0.092 0.908 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.758 5.758 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.027 4.027 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.165 0.835 35 H 0.404 0.596 36 H 0.398 0.602 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.751 12.271 17.456 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.153 4.153 4 C -0.007 4.007 5 N -0.223 5.223 6 C 0.184 3.816 7 O -0.266 6.266 8 C -0.208 4.208 9 C 0.350 3.650 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.038 3.962 13 H 0.110 0.890 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.404 5.404 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.053 4.053 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.182 0.818 35 H 0.263 0.737 36 H 0.233 0.767 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.514 13.254 18.316 31.906 hybrid contribution -1.367 -0.883 -1.888 2.492 sum -23.881 12.371 16.428 31.516 Atomic orbital electron populations 1.21783 0.94302 1.02317 1.02233 1.20509 0.96368 0.90981 1.04064 1.20886 1.02344 0.98486 0.93584 1.22684 0.91309 0.88723 0.97986 1.67355 1.13639 1.09882 1.31381 1.19185 0.88916 0.87171 0.86301 1.84741 1.34968 1.11606 1.95312 1.21146 1.07953 0.96808 0.94862 1.17794 0.77940 0.86340 0.82928 1.90820 1.44460 1.17180 1.86995 1.46007 1.68114 1.17539 1.05437 1.21074 0.98642 0.93605 0.82914 0.89031 1.22174 0.97796 1.00085 1.02035 1.21947 0.98660 0.98119 0.97792 1.21523 0.96698 0.98214 0.98895 1.21777 0.98854 0.97867 0.98215 1.20627 0.93623 0.91274 0.91571 1.42736 1.28330 1.46383 1.22911 1.19089 0.99110 1.13324 1.05875 0.89287 1.24691 0.97539 0.98705 0.98413 1.69706 1.27078 1.27467 1.34097 0.86513 0.80969 0.77108 0.83733 1.21073 1.21724 1.20381 1.21639 0.92537 0.92075 0.99038 0.92515 0.91823 0.92472 0.90136 0.90131 0.81818 0.73652 0.76713 0.92219 0.91383 0.92522 0.90053 0.91386 0.92047 0.91660 0.92205 0.92043 0.95663 0.95842 0.80746 0.93069 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.90 37.16 0.37 -0.21 16 2 C -0.08 -0.36 6.08 -27.88 -0.17 -0.53 16 3 C -0.15 -0.98 5.14 -104.55 -0.54 -1.51 16 4 C 0.15 1.12 10.84 -17.49 -0.19 0.93 16 5 N -0.50 -5.23 10.37 -12.98 -0.13 -5.37 16 6 C 0.36 4.00 7.77 -16.61 -0.13 3.87 16 7 O -0.46 -5.18 11.66 -39.73 -0.46 -5.65 16 8 C -0.20 -1.97 5.90 -104.69 -0.62 -2.59 16 9 C 0.56 6.20 7.74 -12.47 -0.10 6.10 16 10 O -0.52 -7.34 14.86 -16.48 -0.24 -7.59 16 11 N -0.72 -6.16 4.48 -54.85 -0.25 -6.40 16 12 C 0.14 1.26 2.57 -67.94 -0.17 1.08 16 13 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 14 C -0.16 -1.26 9.48 37.15 0.35 -0.91 16 15 C -0.13 -1.09 4.75 -26.73 -0.13 -1.22 16 16 C -0.12 -1.30 5.10 -26.73 -0.14 -1.44 16 17 C -0.13 -1.86 5.33 -26.73 -0.14 -2.00 16 18 C 0.16 3.04 6.26 -4.05 -0.03 3.02 16 19 N -0.76 -18.44 5.41 -59.91 -0.32 -18.76 16 20 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 22 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 23 N -0.94 -29.79 13.97 55.49 0.78 -29.01 16 24 Si 0.89 22.24 27.74 -169.99 -4.71 17.52 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 28 C -0.03 -0.19 9.31 -38.89 -0.36 -0.55 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.35 8.09 -51.93 -0.42 -0.08 16 33 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.40 2.79 9.06 45.56 0.41 3.20 16 36 H 0.40 2.54 6.70 -40.82 -0.27 2.26 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.36 8.44 5.53 -40.82 -0.23 8.22 16 49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 50 H 0.14 0.67 6.51 -52.49 -0.34 0.33 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -37.01 410.96 -8.98 -45.98 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.58 Total: 6.30 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.24 Total: -3.23 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.07 Total: -59.54 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.71 Total: -13.23 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.01 -8.98 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175952667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.056 kcal (2) G-P(sol) polarization free energy of solvation -37.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds