Wall clock time and date at job start Tue Mar 31 2020 19:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47289 * 2 1 4 4 C 1.38345 * 120.27151 * 90.00191 * 3 2 1 5 5 N 1.31885 * 121.18795 * 179.97438 * 4 3 2 6 6 C 1.32239 * 121.79903 * 0.02727 * 5 4 3 7 7 O 1.35423 * 119.79867 * 180.02562 * 6 5 4 8 8 C 1.40280 * 120.39907 * 0.02562 * 6 5 4 9 9 C 1.47529 * 120.59452 * 179.97438 * 8 6 5 10 10 O 1.21585 * 119.99976 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99589 * 180.02562 * 9 8 6 12 12 C 1.46501 * 119.99941 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46828 * 35.00568 * 12 11 9 14 14 C 1.52992 * 109.47432 * 275.00459 * 12 11 9 15 15 C 1.52996 * 109.47377 * 155.00075 * 12 11 9 16 16 C 1.52997 * 109.47131 * 295.00488 * 15 12 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 12 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.47294 * 179.97438 * 18 17 16 20 20 C 1.36935 * 120.00627 * 179.97438 * 19 18 17 21 21 H 1.08012 * 119.99691 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00809 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00579 * 180.02562 * 22 20 19 24 24 Si 1.86811 * 119.99633 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46906 * 90.00102 * 24 22 20 26 26 H 1.48495 * 109.47152 * 210.00270 * 24 22 20 27 27 H 1.48502 * 109.47012 * 330.00516 * 24 22 20 28 28 C 1.38345 * 120.26951 * 270.30068 * 3 2 1 29 29 H 1.08999 * 109.47182 * 59.99864 * 1 2 3 30 30 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46660 * 299.99736 * 1 2 3 32 32 H 1.09000 * 109.46937 * 239.99792 * 2 1 3 33 33 H 1.08999 * 109.47182 * 120.00136 * 2 1 3 34 34 H 1.08004 * 119.40861 * 0.02562 * 4 3 2 35 35 H 0.96698 * 113.99669 * 270.01487 * 7 6 5 36 36 H 0.96999 * 120.00658 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47186 * 59.99610 * 14 12 11 38 38 H 1.08997 * 109.47659 * 179.97438 * 14 12 11 39 39 H 1.09007 * 109.47202 * 299.99880 * 14 12 11 40 40 H 1.08996 * 109.47452 * 175.00488 * 15 12 11 41 41 H 1.09001 * 109.46997 * 55.00062 * 15 12 11 42 42 H 1.09001 * 109.47502 * 60.00153 * 16 15 12 43 43 H 1.09001 * 109.47289 * 299.99950 * 16 15 12 44 44 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 46 46 H 1.09001 * 109.47289 * 299.99953 * 18 17 16 47 47 H 1.09004 * 109.47261 * 59.99697 * 18 17 16 48 48 H 0.97006 * 119.99755 * 359.97438 * 19 18 17 49 49 H 0.97000 * 120.00140 * 180.02562 * 23 22 20 50 50 H 1.07993 * 120.82664 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0782 1.1948 5 7 2.7050 3.3213 1.2159 6 6 2.9432 3.9952 0.1033 7 8 3.3951 5.2699 0.1722 8 6 2.7307 3.3975 -1.1479 9 6 2.9945 4.1454 -2.3919 10 8 3.4003 5.2903 -2.3384 11 7 2.7856 3.5596 -3.5875 12 6 3.0481 4.3020 -4.8228 13 1 3.9065 4.9578 -4.6771 14 6 1.8208 5.1410 -5.1842 15 6 3.3448 3.3179 -5.9561 16 6 4.6422 2.5662 -5.6522 17 6 4.9386 1.5816 -6.7852 18 6 6.2357 0.8294 -6.4810 19 7 6.5192 -0.1137 -7.5655 20 6 7.6372 -0.9027 -7.5122 21 1 8.3103 -0.8293 -6.6707 22 6 7.9061 -1.7959 -8.5401 23 7 8.9804 -2.5546 -8.4885 24 14 6.7423 -1.9224 -9.9959 25 1 7.1637 -0.9661 -11.0509 26 1 6.7763 -3.3044 -10.5382 27 1 5.3618 -1.5971 -9.5558 28 6 2.2590 2.0803 -1.1948 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0836 1.5640 2.1271 35 1 2.6936 5.9352 0.1929 36 1 2.4615 2.6463 -3.6302 37 1 1.6095 5.8422 -4.3768 38 1 2.0162 5.6938 -6.1031 39 1 0.9624 4.4852 -5.3299 40 1 3.4525 3.8644 -6.8930 41 1 2.5241 2.6058 -6.0431 42 1 4.5346 2.0196 -4.7153 43 1 5.4629 3.2783 -5.5652 44 1 4.1179 0.8695 -6.8718 45 1 5.0461 2.1278 -7.7223 46 1 7.0567 1.5412 -6.3941 47 1 6.1277 0.2832 -5.5439 48 1 5.9149 -0.1794 -8.3215 49 1 9.1685 -3.1785 -9.2070 50 1 2.0799 1.5900 -2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175952667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:46 Heat of formation + Delta-G solvation = -80.533397 kcal Electronic energy + Delta-G solvation = -28377.079863 eV Core-core repulsion = 24402.967033 eV Total energy + Delta-G solvation = -3974.112830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.00512 -40.39638 -38.49701 -37.97471 -36.90293 -35.22719 -34.84810 -33.92100 -32.93827 -31.45102 -30.04531 -29.05732 -26.12665 -25.64754 -25.00982 -23.78076 -23.06812 -22.17157 -21.70549 -21.49158 -19.92867 -19.62428 -18.51131 -18.25537 -17.15401 -17.09762 -16.64099 -16.25874 -16.05064 -15.88270 -15.61456 -15.30423 -14.95499 -14.87415 -14.66474 -14.64211 -14.32219 -14.24814 -14.08565 -13.72076 -13.55029 -13.12350 -13.08306 -12.96208 -12.93093 -12.82050 -12.48430 -12.35505 -12.25168 -12.07898 -11.89113 -11.83680 -11.77860 -11.52164 -11.44840 -11.19066 -11.01171 -10.98112 -10.46485 -10.14459 -9.79808 -9.32147 -8.04548 -5.39188 -0.51191 0.00762 1.37359 1.42677 1.50216 1.76975 2.04737 2.47785 2.48113 2.72369 3.26481 3.42615 3.48443 3.63714 3.67951 3.82082 3.90577 4.01425 4.07358 4.14378 4.27193 4.33888 4.38756 4.50120 4.53021 4.57334 4.63623 4.66412 4.75212 4.83013 4.87064 4.90579 4.92512 4.97695 5.01665 5.10774 5.18665 5.24890 5.32005 5.32398 5.37210 5.41182 5.49123 5.49683 5.56224 5.73014 6.19687 6.43108 6.53441 6.78411 7.06435 7.15815 7.82200 8.03138 9.17202 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.002318 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.159284 B =12075.191483 C =13309.395549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.143 4.143 4 C 0.146 3.854 5 N -0.530 5.530 6 C 0.341 3.659 7 O -0.481 6.481 8 C -0.215 4.215 9 C 0.561 3.439 10 O -0.560 6.560 11 N -0.706 5.706 12 C 0.143 3.857 13 H 0.066 0.934 14 C -0.156 4.156 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.115 4.115 18 C 0.149 3.851 19 N -0.760 5.760 20 C -0.243 4.243 21 H 0.050 0.950 22 C -0.068 4.068 23 N -0.986 5.986 24 Si 0.963 3.037 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.245 1.245 28 C -0.023 4.023 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.192 0.808 35 H 0.415 0.585 36 H 0.411 0.589 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.013 0.987 47 H 0.020 0.980 48 H 0.368 0.632 49 H 0.259 0.741 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.056 11.416 16.352 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.145 4.145 4 C -0.011 4.011 5 N -0.248 5.248 6 C 0.162 3.838 7 O -0.290 6.290 8 C -0.221 4.221 9 C 0.348 3.652 10 O -0.439 6.439 11 N -0.359 5.359 12 C 0.039 3.961 13 H 0.084 0.916 14 C -0.214 4.214 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.153 4.153 18 C 0.023 3.977 19 N -0.406 5.406 20 C -0.374 4.374 21 H 0.068 0.932 22 C -0.259 4.259 23 N -0.636 5.636 24 Si 0.789 3.211 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.170 1.170 28 C -0.049 4.049 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.209 0.791 35 H 0.276 0.724 36 H 0.248 0.752 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.031 0.969 47 H 0.038 0.962 48 H 0.202 0.798 49 H 0.068 0.932 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.870 12.415 17.225 33.468 hybrid contribution -0.275 -0.646 -1.409 1.574 sum -26.145 11.768 15.816 32.745 Atomic orbital electron populations 1.21777 0.93733 1.02803 1.02208 1.20573 0.96700 0.89358 1.05005 1.21158 1.01015 0.99371 0.92913 1.23238 0.90217 0.87940 0.99694 1.67355 1.14735 1.11275 1.31471 1.19402 0.90138 0.87164 0.87129 1.84686 1.36341 1.12528 1.95457 1.21098 1.09299 0.97913 0.93828 1.18028 0.77358 0.85947 0.83828 1.90794 1.46537 1.18980 1.87588 1.45920 1.67181 1.18023 1.04740 1.21030 0.98409 0.93633 0.83041 0.91576 1.22110 0.97648 0.99881 1.01796 1.21857 0.97601 0.98111 0.97756 1.21454 0.97914 0.97506 0.97909 1.21659 0.96082 0.98098 0.99454 1.20848 0.96162 0.90519 0.90142 1.42736 1.27002 1.46439 1.24408 1.19057 0.99929 1.13811 1.04574 0.93219 1.25638 0.99706 0.98482 1.02084 1.69907 1.29620 1.28659 1.35436 0.85291 0.79857 0.76851 0.79062 1.20355 1.22057 1.16962 1.21952 0.91360 0.90952 1.00600 0.92669 0.91076 0.92453 0.89531 0.88936 0.79149 0.72376 0.75163 0.93968 0.90368 0.90859 0.89058 0.89143 0.91817 0.92970 0.90766 0.91491 0.96890 0.96234 0.79849 0.93220 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.90 71.98 0.71 -0.02 16 2 C -0.08 -0.46 6.08 29.85 0.18 -0.27 16 3 C -0.14 -1.55 5.14 -19.81 -0.10 -1.65 16 4 C 0.15 1.99 10.84 84.71 0.92 2.90 16 5 N -0.53 -11.02 10.37 -308.00 -3.19 -14.21 16 6 C 0.34 7.75 7.77 85.13 0.66 8.41 16 7 O -0.48 -11.71 11.66 -66.37 -0.77 -12.49 16 8 C -0.21 -4.16 5.90 -19.91 -0.12 -4.28 16 9 C 0.56 12.34 7.74 86.69 0.67 13.01 16 10 O -0.56 -16.56 14.86 16.83 0.25 -16.31 16 11 N -0.71 -11.01 4.48 -445.72 -2.00 -13.01 16 12 C 0.14 2.30 2.57 44.99 0.12 2.41 16 13 H 0.07 1.44 7.58 -2.38 -0.02 1.42 16 14 C -0.16 -2.12 9.48 71.98 0.68 -1.43 16 15 C -0.12 -1.59 4.75 30.59 0.15 -1.45 16 16 C -0.11 -2.21 5.10 30.60 0.16 -2.06 16 17 C -0.12 -2.96 5.33 30.60 0.16 -2.80 16 18 C 0.15 5.66 6.26 86.38 0.54 6.20 16 19 N -0.76 -35.92 5.41 -343.46 -1.86 -37.78 16 20 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 21 H 0.05 3.23 8.06 -2.90 -0.02 3.20 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 23 N -0.99 -64.04 13.97 21.65 0.30 -63.74 16 24 Si 0.96 45.04 27.74 68.60 1.90 46.94 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 28 C -0.02 -0.29 9.31 22.72 0.21 -0.07 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.09 0.45 8.09 -2.39 -0.02 0.43 16 33 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 34 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.41 6.63 9.06 -74.06 -0.67 5.95 16 36 H 0.41 4.06 6.70 -92.71 -0.62 3.44 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.37 16.12 5.53 -92.70 -0.51 15.60 16 49 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16 50 H 0.17 1.06 6.51 -2.91 -0.02 1.04 16 Total: -1.00 -83.04 410.96 0.01 -83.03 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.91 Total: 25.60 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.29 Total: 1.96 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -6.75 Total: -128.74 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.52 Total: -28.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Total: -83.04 0.01 -83.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175952667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal (2) G-P(sol) polarization free energy of solvation -83.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds