Wall clock time and date at job start Tue Mar 31 2020 19:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29935 * 125.37729 * 2 1 4 4 C 1.36068 * 108.47934 * 179.97438 * 3 2 1 5 5 C 1.47423 * 126.45150 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99993 * 185.18542 * 5 4 3 7 7 N 1.34775 * 120.00016 * 5.18113 * 5 4 3 8 8 C 1.46504 * 120.00036 * 184.71832 * 7 5 4 9 9 C 1.53001 * 109.46639 * 276.67071 * 8 7 5 10 10 C 1.52992 * 109.47311 * 181.87764 * 9 8 7 11 11 N 1.46497 * 109.47402 * 179.97438 * 10 9 8 12 12 C 1.36942 * 119.99921 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.38818 * 119.99775 * 180.02562 * 12 11 10 15 15 N 1.31612 * 119.99829 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99830 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47261 * 59.99935 * 16 14 12 18 18 H 1.48500 * 109.47143 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46998 * 299.99897 * 16 14 12 20 20 C 1.46504 * 120.00102 * 4.71095 * 7 5 4 21 21 C 1.52996 * 109.47294 * 256.13431 * 20 7 5 22 22 C 1.54890 * 110.49010 * 65.02137 * 21 20 7 23 23 C 1.55232 * 102.59006 * 156.67688 * 22 21 20 24 24 C 1.54265 * 104.23375 * 322.08394 * 23 22 21 25 25 C 1.53876 * 106.59368 * 23.61036 * 24 23 22 26 26 C 1.36093 * 107.09823 * 0.26226 * 4 3 2 27 27 O 1.34043 * 125.38205 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47189 * 90.00007 * 1 2 3 29 29 H 1.08996 * 109.46863 * 209.99987 * 1 2 3 30 30 H 1.09005 * 109.47255 * 330.00446 * 1 2 3 31 31 H 1.08993 * 109.46955 * 36.66975 * 8 7 5 32 32 H 1.08998 * 109.47246 * 156.67440 * 8 7 5 33 33 H 1.09004 * 109.47571 * 301.88068 * 9 8 7 34 34 H 1.09004 * 109.46935 * 61.87367 * 9 8 7 35 35 H 1.09006 * 109.46770 * 300.00162 * 10 9 8 36 36 H 1.09004 * 109.47445 * 59.99915 * 10 9 8 37 37 H 0.96998 * 120.00020 * 0.02562 * 11 10 9 38 38 H 0.96999 * 119.99915 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.46947 * 136.13046 * 20 7 5 40 40 H 1.09003 * 109.46849 * 16.13041 * 20 7 5 41 41 H 1.09008 * 110.43508 * 302.48271 * 21 20 7 42 42 H 1.09007 * 110.75951 * 275.07258 * 22 21 20 43 43 H 1.08997 * 110.75497 * 38.43546 * 22 21 20 44 44 H 1.09001 * 110.46658 * 203.39315 * 23 22 21 45 45 H 1.09000 * 110.58384 * 80.83157 * 23 22 21 46 46 H 1.08998 * 110.03197 * 264.32981 * 24 23 22 47 47 H 1.09000 * 110.07188 * 142.91249 * 24 23 22 48 48 H 1.09004 * 110.03225 * 240.71058 * 25 24 23 49 49 H 1.09006 * 110.03077 * 119.28386 * 25 24 23 50 50 H 1.08004 * 126.51956 * 179.74611 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8579 1.0654 -0.0934 7 7 4.5906 2.8788 0.1069 8 6 5.7562 3.7604 0.0038 9 6 6.4540 3.8439 1.3629 10 6 7.6437 4.8011 1.2674 11 7 8.3115 4.8816 2.5688 12 6 9.4109 5.6828 2.7258 13 1 9.7854 6.2556 1.8904 14 6 10.0440 5.7586 3.9589 15 7 9.5879 5.0601 4.9768 16 14 11.5433 6.8520 4.1733 17 1 11.1772 8.2591 3.8708 18 1 12.0288 6.7574 5.5735 19 1 12.6155 6.4092 3.2461 20 6 3.2584 3.4482 0.3245 21 6 2.7421 4.0521 -0.9830 22 6 2.5318 2.9450 -2.0457 23 6 1.4907 3.5869 -3.0016 24 6 0.5422 4.3622 -2.0640 25 6 1.3379 4.6579 -0.7806 26 6 3.5659 -0.6970 -0.0050 27 8 2.2831 -1.0929 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 6.4493 3.3612 -0.7366 32 1 5.4330 4.7559 -0.3004 33 1 5.7510 4.2116 2.1104 34 1 6.8065 2.8538 1.6518 35 1 8.3467 4.4334 0.5199 36 1 7.2912 5.7913 0.9785 37 1 7.9754 4.3668 3.3190 38 1 10.0305 5.1128 5.8384 39 1 3.3157 4.2257 1.0861 40 1 2.5779 2.6640 0.6561 41 1 3.4345 4.8087 -1.3524 42 1 3.4628 2.7320 -2.5712 43 1 2.1302 2.0412 -1.5876 44 1 0.9444 2.8151 -3.5438 45 1 1.9791 4.2681 -3.6984 46 1 -0.3311 3.7535 -1.8299 47 1 0.2317 5.2953 -2.5341 48 1 0.8506 4.1928 0.0764 49 1 1.4143 5.7345 -0.6283 50 1 4.4362 -1.3366 -0.0100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177295877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:42 Heat of formation + Delta-G solvation = 0.104082 kcal Electronic energy + Delta-G solvation = -29770.836626 eV Core-core repulsion = 25800.220499 eV Total energy + Delta-G solvation = -3970.616126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.79669 -39.99954 -38.18256 -35.97055 -35.38141 -34.60409 -32.67606 -32.09939 -30.30059 -29.30411 -28.70290 -28.13659 -25.88481 -24.98520 -23.69729 -22.60918 -21.82197 -20.87335 -20.58140 -20.00211 -19.49873 -17.72146 -17.29324 -16.95338 -16.88435 -16.13930 -15.71412 -15.39990 -14.79286 -14.56593 -14.46924 -14.38528 -14.01736 -13.75872 -13.67301 -13.62470 -13.42422 -13.23921 -12.99315 -12.91588 -12.42797 -12.14334 -11.89957 -11.69041 -11.46929 -11.25678 -11.11620 -10.96792 -10.83238 -10.82673 -10.76775 -10.64275 -10.49126 -10.31932 -10.13621 -10.03731 -9.76618 -9.63217 -9.28088 -8.79306 -8.52872 -6.84073 -5.68913 -2.97324 0.87149 1.67392 2.26378 2.91751 3.20441 3.49238 3.51801 3.52846 3.54480 4.31508 4.49939 4.54378 4.57792 4.65026 4.66853 4.87151 4.89850 5.04437 5.11527 5.24365 5.30253 5.31532 5.36474 5.41181 5.44865 5.48294 5.54112 5.58612 5.61226 5.64084 5.71712 5.78525 5.80276 5.87131 5.96185 6.02034 6.12983 6.17313 6.19922 6.23700 6.39184 6.47600 6.51671 6.69826 6.96033 6.98261 7.12953 7.43881 7.76111 8.12907 8.50185 9.60700 10.20228 10.54982 11.54255 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.002564 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.287923 B =10917.897236 C =12058.418261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.188 3.812 3 N -0.446 5.446 4 C -0.064 4.064 5 C 0.595 3.405 6 O -0.531 6.531 7 N -0.588 5.588 8 C 0.122 3.878 9 C -0.139 4.139 10 C 0.157 3.843 11 N -0.733 5.733 12 C -0.238 4.238 13 H 0.070 0.930 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.089 3.911 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.113 4.113 26 C 0.012 3.988 27 O -0.197 6.197 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.440 -10.454 -15.073 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.019 4.019 3 N -0.179 5.179 4 C -0.183 4.183 5 C 0.382 3.618 6 O -0.408 6.408 7 N -0.318 5.318 8 C 0.000 4.000 9 C -0.178 4.178 10 C 0.029 3.971 11 N -0.377 5.377 12 C -0.369 4.369 13 H 0.088 0.912 14 C -0.212 4.212 15 N -0.584 5.584 16 Si 0.739 3.261 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.034 4.034 21 C -0.118 4.118 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.061 4.061 27 O -0.083 6.083 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -25.947 -9.979 -15.143 31.657 hybrid contribution 1.134 -0.046 0.398 1.202 sum -24.814 -10.024 -14.745 30.555 Atomic orbital electron populations 1.20328 0.81064 1.05429 1.04894 1.26529 0.96730 0.78651 1.00000 1.70723 1.00925 1.28120 1.18094 1.21839 0.92016 0.93020 1.11439 1.16843 0.86040 0.81808 0.77112 1.90862 1.24405 1.74863 1.50629 1.47733 1.09011 1.05085 1.69980 1.21498 0.86518 0.93317 0.98683 1.22048 0.98108 1.01426 0.96207 1.20532 0.91578 0.95149 0.89814 1.42351 1.33374 1.54621 1.07375 1.19211 1.03729 1.18551 0.95414 0.91225 1.24751 0.99804 1.00647 0.95987 1.69658 1.42530 1.44869 1.01336 0.86247 0.82887 0.80253 0.76690 1.21300 1.21706 1.21267 1.22437 0.83595 1.00759 0.96616 1.22225 0.96401 0.97332 0.95811 1.22961 0.98140 0.99627 0.95898 1.22393 0.97251 0.98890 0.97644 1.22066 0.98125 0.99663 0.95829 1.22061 0.94926 1.00257 0.97885 1.25289 0.84703 0.95721 1.00420 1.84385 1.16765 1.37829 1.69312 0.88749 0.89172 0.87836 0.90267 0.90229 0.92034 0.91286 0.96269 0.96481 0.78316 0.93522 0.91448 0.85211 0.91392 0.93024 0.88554 0.92448 0.92291 0.92141 0.92373 0.91488 0.92085 0.75329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.19 1.44 8.30 -13.08 -0.11 1.33 16 3 N -0.45 -4.36 4.63 -7.66 -0.04 -4.40 16 4 C -0.06 -0.76 6.15 -83.02 -0.51 -1.27 16 5 C 0.60 8.83 7.37 -12.52 -0.09 8.74 16 6 O -0.53 -9.56 16.43 5.27 0.09 -9.47 16 7 N -0.59 -8.07 2.32 -174.96 -0.41 -8.47 16 8 C 0.12 1.82 5.25 -4.04 -0.02 1.80 16 9 C -0.14 -2.54 5.59 -26.73 -0.15 -2.69 16 10 C 0.16 3.42 6.26 -4.05 -0.03 3.39 16 11 N -0.73 -19.99 5.60 -59.91 -0.34 -20.33 16 12 C -0.24 -7.02 9.99 -15.05 -0.15 -7.17 16 13 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 14 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -29.50 13.06 55.49 0.72 -28.78 16 16 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C 0.09 1.00 4.70 -4.04 -0.02 0.98 16 21 C -0.10 -0.97 2.98 -88.97 -0.27 -1.24 16 22 C -0.13 -1.28 5.54 -24.55 -0.14 -1.42 16 23 C -0.12 -1.03 6.84 -24.89 -0.17 -1.20 16 24 C -0.12 -0.88 6.80 -25.61 -0.17 -1.06 16 25 C -0.11 -0.93 6.37 -25.62 -0.16 -1.09 16 26 C 0.01 0.12 11.95 29.96 0.36 0.48 16 27 O -0.20 -1.69 10.73 6.54 0.07 -1.62 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 32 H 0.08 1.04 7.48 -51.93 -0.39 0.65 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.41 7.94 -51.93 -0.41 1.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 11.00 7.67 -40.82 -0.31 10.68 16 38 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.13 1.44 4.35 -56.35 -0.25 1.19 16 41 H 0.07 0.73 7.62 -51.92 -0.40 0.34 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.97 4.36 -51.93 -0.23 0.74 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.23 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -35.31 398.76 -8.51 -43.82 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.25 Total: 5.87 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.35 Total: -0.82 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.05 Total: -61.98 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.16 Total: -11.09 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.31 -8.51 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177295877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.922 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds