Wall clock time and date at job start Tue Mar 31 2020 19:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29935 * 125.37729 * 2 1 4 4 C 1.36068 * 108.47934 * 179.97438 * 3 2 1 5 5 C 1.47423 * 126.45150 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99993 * 185.18542 * 5 4 3 7 7 N 1.34775 * 120.00016 * 5.18113 * 5 4 3 8 8 C 1.46504 * 120.00036 * 184.71832 * 7 5 4 9 9 C 1.53001 * 109.46639 * 276.67071 * 8 7 5 10 10 C 1.52992 * 109.47311 * 181.87764 * 9 8 7 11 11 N 1.46497 * 109.47402 * 179.97438 * 10 9 8 12 12 C 1.36942 * 119.99921 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.38818 * 119.99775 * 180.02562 * 12 11 10 15 15 N 1.31612 * 119.99829 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99830 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47261 * 59.99935 * 16 14 12 18 18 H 1.48500 * 109.47143 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46998 * 299.99897 * 16 14 12 20 20 C 1.46504 * 120.00102 * 4.71095 * 7 5 4 21 21 C 1.52996 * 109.47294 * 256.13431 * 20 7 5 22 22 C 1.54890 * 110.49010 * 65.02137 * 21 20 7 23 23 C 1.55232 * 102.59006 * 156.67688 * 22 21 20 24 24 C 1.54265 * 104.23375 * 322.08394 * 23 22 21 25 25 C 1.53876 * 106.59368 * 23.61036 * 24 23 22 26 26 C 1.36093 * 107.09823 * 0.26226 * 4 3 2 27 27 O 1.34043 * 125.38205 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47189 * 90.00007 * 1 2 3 29 29 H 1.08996 * 109.46863 * 209.99987 * 1 2 3 30 30 H 1.09005 * 109.47255 * 330.00446 * 1 2 3 31 31 H 1.08993 * 109.46955 * 36.66975 * 8 7 5 32 32 H 1.08998 * 109.47246 * 156.67440 * 8 7 5 33 33 H 1.09004 * 109.47571 * 301.88068 * 9 8 7 34 34 H 1.09004 * 109.46935 * 61.87367 * 9 8 7 35 35 H 1.09006 * 109.46770 * 300.00162 * 10 9 8 36 36 H 1.09004 * 109.47445 * 59.99915 * 10 9 8 37 37 H 0.96998 * 120.00020 * 0.02562 * 11 10 9 38 38 H 0.96999 * 119.99915 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.46947 * 136.13046 * 20 7 5 40 40 H 1.09003 * 109.46849 * 16.13041 * 20 7 5 41 41 H 1.09008 * 110.43508 * 302.48271 * 21 20 7 42 42 H 1.09007 * 110.75951 * 275.07258 * 22 21 20 43 43 H 1.08997 * 110.75497 * 38.43546 * 22 21 20 44 44 H 1.09001 * 110.46658 * 203.39315 * 23 22 21 45 45 H 1.09000 * 110.58384 * 80.83157 * 23 22 21 46 46 H 1.08998 * 110.03197 * 264.32981 * 24 23 22 47 47 H 1.09000 * 110.07188 * 142.91249 * 24 23 22 48 48 H 1.09004 * 110.03225 * 240.71058 * 25 24 23 49 49 H 1.09006 * 110.03077 * 119.28386 * 25 24 23 50 50 H 1.08004 * 126.51956 * 179.74611 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8579 1.0654 -0.0934 7 7 4.5906 2.8788 0.1069 8 6 5.7562 3.7604 0.0038 9 6 6.4540 3.8439 1.3629 10 6 7.6437 4.8011 1.2674 11 7 8.3115 4.8816 2.5688 12 6 9.4109 5.6828 2.7258 13 1 9.7854 6.2556 1.8904 14 6 10.0440 5.7586 3.9589 15 7 9.5879 5.0601 4.9768 16 14 11.5433 6.8520 4.1733 17 1 11.1772 8.2591 3.8708 18 1 12.0288 6.7574 5.5735 19 1 12.6155 6.4092 3.2461 20 6 3.2584 3.4482 0.3245 21 6 2.7421 4.0521 -0.9830 22 6 2.5318 2.9450 -2.0457 23 6 1.4907 3.5869 -3.0016 24 6 0.5422 4.3622 -2.0640 25 6 1.3379 4.6579 -0.7806 26 6 3.5659 -0.6970 -0.0050 27 8 2.2831 -1.0929 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 6.4493 3.3612 -0.7366 32 1 5.4330 4.7559 -0.3004 33 1 5.7510 4.2116 2.1104 34 1 6.8065 2.8538 1.6518 35 1 8.3467 4.4334 0.5199 36 1 7.2912 5.7913 0.9785 37 1 7.9754 4.3668 3.3190 38 1 10.0305 5.1128 5.8384 39 1 3.3157 4.2257 1.0861 40 1 2.5779 2.6640 0.6561 41 1 3.4345 4.8087 -1.3524 42 1 3.4628 2.7320 -2.5712 43 1 2.1302 2.0412 -1.5876 44 1 0.9444 2.8151 -3.5438 45 1 1.9791 4.2681 -3.6984 46 1 -0.3311 3.7535 -1.8299 47 1 0.2317 5.2953 -2.5341 48 1 0.8506 4.1928 0.0764 49 1 1.4143 5.7345 -0.6283 50 1 4.4362 -1.3366 -0.0100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177295877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:41 Heat of formation + Delta-G solvation = -21.894525 kcal Electronic energy + Delta-G solvation = -29771.790557 eV Core-core repulsion = 25800.220499 eV Total energy + Delta-G solvation = -3971.570057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.50979 -41.08437 -39.03357 -37.47885 -36.38097 -35.94955 -34.09001 -33.10362 -31.81052 -30.50016 -29.40035 -28.76564 -27.43121 -25.90078 -25.27788 -23.83831 -22.83737 -22.34256 -21.31154 -20.79196 -20.37561 -19.18148 -18.65696 -17.98492 -17.70825 -17.33456 -16.58722 -16.46533 -16.34869 -16.02282 -15.53535 -15.32881 -15.24855 -15.01480 -14.78694 -14.53482 -14.50646 -14.19472 -13.81503 -13.64566 -13.48256 -13.28689 -13.14274 -12.90009 -12.74924 -12.51764 -12.46394 -12.18473 -12.11827 -11.94486 -11.90812 -11.85296 -11.82966 -11.62973 -11.59866 -11.28437 -11.09759 -10.95735 -10.61260 -10.03982 -9.65061 -9.05448 -7.97698 -5.28353 0.06966 0.93106 1.45000 1.49744 1.55786 1.59932 1.89711 2.17279 2.54556 2.82900 3.35281 3.50405 3.79591 3.81615 3.84712 3.86834 3.90257 4.00058 4.22591 4.34877 4.42279 4.48442 4.49974 4.54021 4.61103 4.63933 4.66891 4.70953 4.73116 4.77860 4.78610 4.80673 4.86324 4.93921 4.97506 5.11360 5.12535 5.18970 5.25069 5.26233 5.31095 5.36808 5.44131 5.45392 5.55398 5.62542 5.77691 6.23810 6.25349 6.50661 7.00894 7.29117 8.03676 8.28065 9.26188 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.002564 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.287923 B =10917.897236 C =12058.418261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.200 3.800 3 N -0.461 5.461 4 C -0.092 4.092 5 C 0.589 3.411 6 O -0.575 6.575 7 N -0.587 5.587 8 C 0.131 3.869 9 C -0.120 4.120 10 C 0.157 3.843 11 N -0.749 5.749 12 C -0.251 4.251 13 H 0.078 0.922 14 C -0.079 4.079 15 N -0.972 5.972 16 Si 0.981 3.019 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.277 1.277 20 C 0.087 3.913 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.110 4.110 26 C 0.022 3.978 27 O -0.195 6.195 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.017 0.983 36 H 0.032 0.968 37 H 0.372 0.628 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.138 0.862 41 H 0.057 0.943 42 H 0.026 0.974 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.767 -10.077 -16.009 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 N -0.192 5.192 4 C -0.210 4.210 5 C 0.378 3.622 6 O -0.455 6.455 7 N -0.316 5.316 8 C 0.008 3.992 9 C -0.159 4.159 10 C 0.031 3.969 11 N -0.392 5.392 12 C -0.383 4.383 13 H 0.096 0.904 14 C -0.271 4.271 15 N -0.623 5.623 16 Si 0.808 3.192 17 H -0.199 1.199 18 H -0.219 1.219 19 H -0.203 1.203 20 C -0.034 4.034 21 C -0.115 4.115 22 C -0.164 4.164 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.052 4.052 27 O -0.081 6.081 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.203 0.797 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -28.317 -9.568 -16.125 33.962 hybrid contribution 1.761 -0.232 0.647 1.890 sum -26.556 -9.800 -15.478 32.262 Atomic orbital electron populations 1.20658 0.77651 1.06906 1.06537 1.27510 0.98158 0.77754 0.97339 1.70614 1.00031 1.29028 1.19533 1.21507 0.92036 0.93334 1.14128 1.17287 0.86509 0.82261 0.76137 1.90823 1.26284 1.75648 1.52756 1.47803 1.09490 1.04889 1.69450 1.21308 0.86935 0.94772 0.96170 1.21830 0.96991 0.98850 0.98235 1.20672 0.92295 0.96594 0.87388 1.42601 1.33482 1.54257 1.08840 1.19658 1.04292 1.18538 0.95796 0.90419 1.25687 1.03169 1.02491 0.95713 1.69833 1.44106 1.46669 1.01687 0.85113 0.78985 0.78659 0.76403 1.19943 1.21901 1.20343 1.22617 0.82397 1.00899 0.97498 1.22181 0.97378 0.97055 0.94883 1.22917 0.97542 0.99893 0.96092 1.22380 0.97001 0.99081 0.97475 1.22053 0.98141 1.00088 0.94935 1.22050 0.93669 1.00281 0.98784 1.25567 0.85626 0.95226 0.98798 1.84432 1.16294 1.38136 1.69255 0.86824 0.87304 0.86699 0.91272 0.87950 0.92044 0.93994 0.96521 0.94988 0.79711 0.93878 0.91551 0.84552 0.92456 0.95529 0.88331 0.91451 0.92852 0.90555 0.91749 0.90668 0.91881 0.73932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 71.23 0.75 0.57 16 2 C 0.20 2.63 8.30 88.39 0.73 3.37 16 3 N -0.46 -8.44 4.63 -293.04 -1.36 -9.80 16 4 C -0.09 -2.19 6.15 40.41 0.25 -1.94 16 5 C 0.59 18.17 7.37 86.66 0.64 18.81 16 6 O -0.57 -21.88 16.43 -4.06 -0.07 -21.94 16 7 N -0.59 -16.50 2.32 -825.69 -1.92 -18.42 16 8 C 0.13 3.99 5.25 86.38 0.45 4.45 16 9 C -0.12 -4.52 5.59 30.59 0.17 -4.35 16 10 C 0.16 6.93 6.26 86.38 0.54 7.47 16 11 N -0.75 -41.71 5.60 -343.45 -1.92 -43.64 16 12 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 13 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 14 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 15 N -0.97 -62.44 13.06 21.65 0.28 -62.16 16 16 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 17 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 C 0.09 1.94 4.70 86.38 0.41 2.35 16 21 C -0.10 -1.81 2.98 -9.72 -0.03 -1.84 16 22 C -0.13 -2.44 5.54 32.01 0.18 -2.26 16 23 C -0.12 -1.82 6.84 31.79 0.22 -1.60 16 24 C -0.11 -1.39 6.80 31.32 0.21 -1.18 16 25 C -0.11 -1.57 6.37 31.32 0.20 -1.37 16 26 C 0.02 0.42 11.95 67.32 0.80 1.22 16 27 O -0.19 -3.02 10.73 0.48 0.01 -3.01 16 28 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.07 2.26 7.70 -2.39 -0.02 2.24 16 32 H 0.10 2.63 7.48 -2.39 -0.02 2.61 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.80 7.94 -2.38 -0.02 1.78 16 35 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.37 22.04 7.67 -92.71 -0.71 21.33 16 38 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.14 2.92 4.35 -11.12 -0.05 2.87 16 41 H 0.06 1.20 7.62 -2.38 -0.02 1.19 16 42 H 0.03 0.62 8.14 -2.38 -0.02 0.61 16 43 H 0.10 1.87 4.36 -2.39 -0.01 1.86 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.97 7.84 -2.38 -0.02 0.95 16 49 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.24 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -77.74 398.76 4.07 -73.67 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.19 Total: 30.10 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.83 Total: 5.32 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -4.92 Total: -134.02 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -77.74 4.07 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177295877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.776 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds