Wall clock time and date at job start Tue Mar 31 2020 19:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47393 * 2 1 4 4 O 1.33496 * 126.83146 * 270.16953 * 3 2 1 5 5 N 1.20656 * 113.15753 * 180.30962 * 4 3 2 6 6 C 1.30017 * 112.30285 * 359.71356 * 5 4 3 7 7 C 1.50692 * 127.33611 * 180.02562 * 6 5 4 8 8 C 1.37361 * 126.82775 * 90.00132 * 3 2 1 9 9 C 1.47399 * 128.56710 * 359.97438 * 8 3 2 10 10 O 1.21609 * 119.99650 * 269.70644 * 9 8 3 11 11 N 1.34773 * 119.99970 * 89.70240 * 9 8 3 12 12 C 1.46931 * 120.60493 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.53550 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.08995 * 109.45917 * 301.32981 * 14 13 12 16 16 C 1.53005 * 109.45951 * 181.36946 * 14 13 12 17 17 N 1.46495 * 109.47087 * 65.00121 * 16 14 13 18 18 C 1.36932 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99572 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00034 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47416 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.46919 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46995 * 299.99873 * 22 20 18 26 26 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 27 27 H 1.09001 * 109.49436 * 178.68310 * 26 14 13 28 28 C 1.52997 * 109.49737 * 58.61885 * 26 14 13 29 29 C 1.46928 * 120.62770 * 180.02562 * 11 9 8 30 30 H 1.09006 * 109.47187 * 300.00140 * 1 2 3 31 31 H 1.09006 * 109.47136 * 59.99848 * 1 2 3 32 32 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46811 * 239.99826 * 2 1 3 34 34 H 1.09003 * 109.46981 * 120.00652 * 2 1 3 35 35 H 1.09005 * 109.46966 * 269.96317 * 7 6 5 36 36 H 1.08995 * 109.47218 * 29.96033 * 7 6 5 37 37 H 1.08999 * 109.47020 * 149.96434 * 7 6 5 38 38 H 1.08996 * 109.56502 * 113.76244 * 12 11 9 39 39 H 1.09001 * 109.61713 * 353.33665 * 12 11 9 40 40 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 41 41 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 42 42 H 1.08992 * 109.47047 * 185.00063 * 16 14 13 43 43 H 1.09005 * 109.46671 * 305.00090 * 16 14 13 44 44 H 0.97003 * 119.99810 * 359.97438 * 17 16 14 45 45 H 0.97007 * 119.99441 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.47172 * 60.00149 * 28 26 14 47 47 H 1.09003 * 109.46963 * 180.02562 * 28 26 14 48 48 H 1.08998 * 109.47040 * 299.99727 * 28 26 14 49 49 H 1.08997 * 109.58597 * 6.64243 * 29 11 9 50 50 H 1.09001 * 109.69741 * 246.29061 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2962 2.1763 -1.0685 5 7 2.6935 3.2793 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 3.2090 4.7058 1.2259 8 6 2.3069 2.1970 1.0995 9 6 2.1825 1.8467 2.5259 10 8 1.1402 2.0587 3.1153 11 7 3.2240 1.2916 3.1767 12 6 4.4896 1.0302 2.4776 13 6 4.8669 -0.4414 2.6748 14 6 4.8970 -0.7607 4.1712 15 1 5.6173 -0.1099 4.6669 16 6 5.3069 -2.2210 4.3726 17 7 6.6832 -2.4105 3.9079 18 6 7.2697 -3.6451 3.9898 19 1 6.7175 -4.4794 4.3965 20 6 8.5741 -3.8245 3.5500 21 7 9.2469 -2.8079 3.0538 22 14 9.3738 -5.5090 3.6610 23 1 8.5886 -6.4835 2.8618 24 1 10.7590 -5.4352 3.1308 25 1 9.4100 -5.9472 5.0795 26 6 3.5075 -0.5338 4.7710 27 1 3.5240 -0.7838 5.8319 28 6 2.4899 -1.4223 4.0527 29 6 3.1150 0.9365 4.5983 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.2841 4.6578 1.3996 36 1 2.9776 5.5820 0.6203 37 1 2.6895 4.7770 2.1815 38 1 5.2725 1.6666 2.8900 39 1 4.3698 1.2374 1.4142 40 1 5.8509 -0.6256 2.2435 41 1 4.1294 -1.0752 2.1823 42 1 5.2427 -2.4737 5.4309 43 1 4.6389 -2.8676 3.8034 44 1 7.1791 -1.6613 3.5423 45 1 10.1583 -2.9334 2.7462 46 1 2.7713 -2.4683 4.1740 47 1 1.5003 -1.2600 4.4800 48 1 2.4729 -1.1712 2.9922 49 1 2.0882 1.0824 4.9336 50 1 3.7841 1.5647 5.1862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185651492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:03 Heat of formation + Delta-G solvation = 21.035480 kcal Electronic energy + Delta-G solvation = -30621.949404 eV Core-core repulsion = 26652.240932 eV Total energy + Delta-G solvation = -3969.708473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.06606 -40.44587 -38.13720 -35.14542 -34.97476 -34.74354 -33.37315 -31.84627 -30.56297 -30.34962 -29.04831 -27.18993 -27.00508 -24.82617 -23.95614 -23.41461 -23.05445 -21.50748 -20.60969 -19.81698 -18.47968 -18.08246 -17.65419 -17.09714 -16.58743 -16.02002 -15.63821 -15.06472 -14.81544 -14.52494 -14.36259 -14.05973 -13.81947 -13.72619 -13.66332 -13.54362 -13.38703 -13.14900 -12.94549 -12.77241 -12.58062 -12.48628 -12.27803 -11.89815 -11.75827 -11.64964 -11.47558 -11.12714 -11.08773 -10.96698 -10.80057 -10.43789 -10.35996 -10.27640 -10.18289 -10.04372 -9.96880 -9.66658 -9.51942 -8.88285 -8.70410 -6.93720 -5.79332 -3.07399 1.11205 1.71112 2.24606 2.57750 2.98995 3.42006 3.46788 3.47481 3.84912 3.99746 4.36744 4.56071 4.61507 4.74994 4.79999 4.84392 4.91565 4.95143 4.98743 5.09548 5.18175 5.20009 5.20642 5.35377 5.41667 5.46323 5.50117 5.51975 5.57881 5.62039 5.68091 5.73176 5.76770 5.79880 5.82743 5.89178 6.00025 6.04340 6.14086 6.23852 6.31881 6.40351 6.41407 6.60829 6.77052 6.89246 7.21624 7.67300 7.94472 8.02699 8.40032 9.51196 10.09288 10.43644 11.43509 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003020 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.692807 B = 9269.173082 C = 9601.524098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.022 3.978 4 O 0.097 5.903 5 N -0.355 5.355 6 C 0.052 3.948 7 C -0.077 4.077 8 C -0.243 4.243 9 C 0.601 3.399 10 O -0.533 6.533 11 N -0.592 5.592 12 C 0.107 3.893 13 C -0.126 4.126 14 C -0.089 4.089 15 H 0.072 0.928 16 C 0.159 3.841 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.099 4.099 27 H 0.084 0.916 28 C -0.145 4.145 29 C 0.117 3.883 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.021 0.979 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.053 0.947 49 H 0.092 0.908 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 11.343 -3.555 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.087 4.087 3 C -0.041 4.041 4 O 0.036 5.964 5 N -0.062 5.062 6 C -0.110 4.110 7 C -0.135 4.135 8 C -0.250 4.250 9 C 0.387 3.613 10 O -0.410 6.410 11 N -0.324 5.324 12 C -0.016 4.016 13 C -0.164 4.164 14 C -0.108 4.108 15 H 0.090 0.910 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.118 4.118 27 H 0.102 0.898 28 C -0.202 4.202 29 C -0.005 4.005 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.508 12.031 -4.267 20.868 hybrid contribution 0.795 -0.963 0.599 1.385 sum -15.713 11.069 -3.668 19.567 Atomic orbital electron populations 1.21786 0.92784 1.03136 1.03079 1.20294 0.97261 0.85732 1.05419 1.24671 0.98327 0.96083 0.85058 1.84532 1.61372 1.17567 1.32943 1.73617 1.17225 0.98784 1.16539 1.24724 1.00507 0.96700 0.89046 1.20218 1.02262 0.91370 0.99623 1.21839 1.12619 0.95417 0.95168 1.16888 0.83220 0.77221 0.83946 1.90796 1.28228 1.54229 1.67713 1.48038 1.13079 1.59914 1.11381 1.21869 0.84689 0.98011 0.96985 1.21970 1.03309 0.93778 0.97348 1.21314 0.95272 0.99010 0.95166 0.90951 1.20704 0.87686 0.91849 0.96616 1.42368 1.09944 1.09943 1.75364 1.19176 0.95637 0.87797 1.34461 0.91347 1.24714 0.97007 0.97383 1.01775 1.69642 1.11261 1.29541 1.47843 0.86287 0.78512 0.83861 0.77643 1.21295 1.21695 1.21310 1.21474 0.95667 0.93892 1.00774 0.89795 1.21874 0.97848 1.00092 1.00406 1.21745 1.03160 0.95599 0.80001 0.91669 0.91963 0.90837 0.88455 0.88306 0.89531 0.89945 0.89864 0.90894 0.90469 0.89293 0.91396 0.96482 0.96099 0.78324 0.93493 0.91781 0.93204 0.92831 0.88977 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.05 -0.42 6.38 -27.89 -0.18 -0.60 16 3 C 0.02 0.25 6.69 -34.63 -0.23 0.01 16 4 O 0.10 1.17 11.06 18.64 0.21 1.38 16 5 N -0.36 -4.55 12.01 34.78 0.42 -4.13 16 6 C 0.05 0.62 7.59 -79.77 -0.61 0.02 16 7 C -0.08 -0.69 10.49 36.00 0.38 -0.31 16 8 C -0.24 -2.97 4.23 -102.89 -0.44 -3.41 16 9 C 0.60 7.87 7.49 -12.53 -0.09 7.78 16 10 O -0.53 -8.44 16.52 5.27 0.09 -8.35 16 11 N -0.59 -6.97 2.41 -174.06 -0.42 -7.39 16 12 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 13 C -0.13 -1.72 4.90 -26.61 -0.13 -1.85 16 14 C -0.09 -1.27 1.96 -90.57 -0.18 -1.45 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.16 2.96 5.18 -4.04 -0.02 2.94 16 17 N -0.73 -17.57 5.32 -59.91 -0.32 -17.89 16 18 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.10 -1.17 2.72 -90.52 -0.25 -1.41 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.15 -1.70 8.38 37.16 0.31 -1.39 16 29 C 0.12 1.32 5.83 -3.73 -0.02 1.30 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.89 7.65 -51.93 -0.40 0.49 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.88 6.25 -51.93 -0.32 0.56 16 40 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 41 H 0.07 0.92 6.34 -51.93 -0.33 0.59 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 44 H 0.38 9.59 6.85 -40.82 -0.28 9.31 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.64 5.51 -51.93 -0.29 0.35 16 49 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -31.94 396.87 -7.78 -39.72 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.08 Total: 5.57 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.35 Total: -5.11 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.40 Total: -56.18 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.29 Total: -6.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.94 -7.78 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.759 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds