Wall clock time and date at job start Tue Mar 31 2020 19:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47393 * 2 1 4 4 O 1.33496 * 126.83146 * 270.16953 * 3 2 1 5 5 N 1.20656 * 113.15753 * 180.30962 * 4 3 2 6 6 C 1.30017 * 112.30285 * 359.71356 * 5 4 3 7 7 C 1.50692 * 127.33611 * 180.02562 * 6 5 4 8 8 C 1.37361 * 126.82775 * 90.00132 * 3 2 1 9 9 C 1.47399 * 128.56710 * 359.97438 * 8 3 2 10 10 O 1.21609 * 119.99650 * 269.70644 * 9 8 3 11 11 N 1.34773 * 119.99970 * 89.70240 * 9 8 3 12 12 C 1.46931 * 120.60493 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.53550 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.08995 * 109.45917 * 301.32981 * 14 13 12 16 16 C 1.53005 * 109.45951 * 181.36946 * 14 13 12 17 17 N 1.46495 * 109.47087 * 65.00121 * 16 14 13 18 18 C 1.36932 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99572 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00034 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47416 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.46919 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46995 * 299.99873 * 22 20 18 26 26 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 27 27 H 1.09001 * 109.49436 * 178.68310 * 26 14 13 28 28 C 1.52997 * 109.49737 * 58.61885 * 26 14 13 29 29 C 1.46928 * 120.62770 * 180.02562 * 11 9 8 30 30 H 1.09006 * 109.47187 * 300.00140 * 1 2 3 31 31 H 1.09006 * 109.47136 * 59.99848 * 1 2 3 32 32 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46811 * 239.99826 * 2 1 3 34 34 H 1.09003 * 109.46981 * 120.00652 * 2 1 3 35 35 H 1.09005 * 109.46966 * 269.96317 * 7 6 5 36 36 H 1.08995 * 109.47218 * 29.96033 * 7 6 5 37 37 H 1.08999 * 109.47020 * 149.96434 * 7 6 5 38 38 H 1.08996 * 109.56502 * 113.76244 * 12 11 9 39 39 H 1.09001 * 109.61713 * 353.33665 * 12 11 9 40 40 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 41 41 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 42 42 H 1.08992 * 109.47047 * 185.00063 * 16 14 13 43 43 H 1.09005 * 109.46671 * 305.00090 * 16 14 13 44 44 H 0.97003 * 119.99810 * 359.97438 * 17 16 14 45 45 H 0.97007 * 119.99441 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.47172 * 60.00149 * 28 26 14 47 47 H 1.09003 * 109.46963 * 180.02562 * 28 26 14 48 48 H 1.08998 * 109.47040 * 299.99727 * 28 26 14 49 49 H 1.08997 * 109.58597 * 6.64243 * 29 11 9 50 50 H 1.09001 * 109.69741 * 246.29061 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2962 2.1763 -1.0685 5 7 2.6935 3.2793 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 3.2090 4.7058 1.2259 8 6 2.3069 2.1970 1.0995 9 6 2.1825 1.8467 2.5259 10 8 1.1402 2.0587 3.1153 11 7 3.2240 1.2916 3.1767 12 6 4.4896 1.0302 2.4776 13 6 4.8669 -0.4414 2.6748 14 6 4.8970 -0.7607 4.1712 15 1 5.6173 -0.1099 4.6669 16 6 5.3069 -2.2210 4.3726 17 7 6.6832 -2.4105 3.9079 18 6 7.2697 -3.6451 3.9898 19 1 6.7175 -4.4794 4.3965 20 6 8.5741 -3.8245 3.5500 21 7 9.2469 -2.8079 3.0538 22 14 9.3738 -5.5090 3.6610 23 1 8.5886 -6.4835 2.8618 24 1 10.7590 -5.4352 3.1308 25 1 9.4100 -5.9472 5.0795 26 6 3.5075 -0.5338 4.7710 27 1 3.5240 -0.7838 5.8319 28 6 2.4899 -1.4223 4.0527 29 6 3.1150 0.9365 4.5983 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.2841 4.6578 1.3996 36 1 2.9776 5.5820 0.6203 37 1 2.6895 4.7770 2.1815 38 1 5.2725 1.6666 2.8900 39 1 4.3698 1.2374 1.4142 40 1 5.8509 -0.6256 2.2435 41 1 4.1294 -1.0752 2.1823 42 1 5.2427 -2.4737 5.4309 43 1 4.6389 -2.8676 3.8034 44 1 7.1791 -1.6613 3.5423 45 1 10.1583 -2.9334 2.7462 46 1 2.7713 -2.4683 4.1740 47 1 1.5003 -1.2600 4.4800 48 1 2.4729 -1.1712 2.9922 49 1 2.0882 1.0824 4.9336 50 1 3.7841 1.5647 5.1862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185651492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:02 Heat of formation + Delta-G solvation = 3.334865 kcal Electronic energy + Delta-G solvation = -30622.716961 eV Core-core repulsion = 26652.240932 eV Total energy + Delta-G solvation = -3970.476029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.96978 -41.49130 -39.28507 -36.55726 -35.92202 -35.62353 -34.74802 -33.21733 -31.97871 -31.36647 -29.83242 -28.50001 -28.11831 -25.97370 -25.17109 -24.57256 -24.16627 -22.85719 -21.59071 -20.74958 -19.66114 -19.19995 -18.79086 -18.54273 -17.62357 -16.99193 -16.78850 -16.53358 -15.82864 -15.70892 -15.42958 -15.31907 -15.26336 -14.83581 -14.69976 -14.38581 -14.33072 -14.18041 -13.95173 -13.87195 -13.69854 -13.54480 -13.47245 -12.95630 -12.78545 -12.67926 -12.59477 -12.53611 -12.46206 -12.22271 -12.03625 -11.89646 -11.87978 -11.56198 -11.48938 -11.24043 -11.16942 -10.93559 -10.85600 -10.43015 -9.73208 -8.93475 -7.92148 -5.19212 0.22942 0.81372 1.23624 1.49322 1.51121 1.57281 1.67444 2.06500 2.58526 3.00231 3.16770 3.41675 3.45261 3.71653 3.74886 3.81551 3.85592 4.02770 4.07611 4.17805 4.20826 4.23095 4.33544 4.37204 4.44983 4.47520 4.55161 4.63019 4.67629 4.71545 4.76643 4.77065 4.83115 4.86683 4.91424 4.97752 4.99826 5.05038 5.10002 5.19578 5.20457 5.24232 5.29749 5.32709 5.49396 5.54515 5.62493 6.21029 6.30783 6.93501 7.13660 7.37787 8.15397 8.38300 9.30946 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003020 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.692807 B = 9269.173082 C = 9601.524098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C 0.031 3.969 4 O 0.091 5.909 5 N -0.375 5.375 6 C 0.051 3.949 7 C -0.078 4.078 8 C -0.265 4.265 9 C 0.608 3.392 10 O -0.562 6.562 11 N -0.585 5.585 12 C 0.117 3.883 13 C -0.118 4.118 14 C -0.078 4.078 15 H 0.068 0.932 16 C 0.159 3.841 17 N -0.742 5.742 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.280 1.280 26 C -0.090 4.090 27 H 0.095 0.905 28 C -0.142 4.142 29 C 0.119 3.881 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 11.166 -3.292 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.033 4.033 4 O 0.031 5.969 5 N -0.084 5.084 6 C -0.111 4.111 7 C -0.135 4.135 8 C -0.272 4.272 9 C 0.395 3.605 10 O -0.441 6.441 11 N -0.317 5.317 12 C -0.005 4.005 13 C -0.156 4.156 14 C -0.097 4.097 15 H 0.086 0.914 16 C 0.033 3.967 17 N -0.385 5.385 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.264 4.264 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.206 1.206 26 C -0.109 4.109 27 H 0.113 0.887 28 C -0.199 4.199 29 C -0.003 4.003 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.208 0.792 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.110 0.890 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.347 11.833 -3.991 21.375 hybrid contribution 0.983 -0.925 0.538 1.453 sum -16.364 10.909 -3.453 19.968 Atomic orbital electron populations 1.21755 0.92091 1.04113 1.02320 1.20460 0.97730 0.84392 1.06263 1.25111 0.96908 0.96705 0.84559 1.84510 1.61538 1.17587 1.33224 1.73608 1.18385 0.99283 1.17086 1.25190 0.99673 0.97379 0.88900 1.20345 1.03048 0.90585 0.99510 1.21867 1.14188 0.96147 0.95017 1.16907 0.82792 0.76716 0.84077 1.90780 1.29308 1.55620 1.68422 1.48023 1.12755 1.59306 1.11572 1.21762 0.84789 0.96592 0.97397 1.21834 1.01884 0.95305 0.96623 1.21186 0.96687 0.95959 0.95851 0.91354 1.20843 0.85081 0.94784 0.95993 1.42558 1.11810 1.08772 1.75380 1.19567 0.95851 0.89040 1.33149 0.91004 1.25463 0.97810 1.00689 1.02430 1.69790 1.11226 1.31360 1.49399 0.85301 0.77154 0.80084 0.77765 1.20503 1.22254 1.20623 1.21413 0.93818 0.94499 1.01215 0.88668 1.21839 0.98290 0.99494 1.00295 1.21790 1.03520 0.95206 0.79775 0.93605 0.91486 0.89002 0.86452 0.88549 0.88164 0.88847 0.89717 0.89890 0.90076 0.91877 0.91302 0.96659 0.95993 0.79246 0.94096 0.92551 0.92208 0.93115 0.89017 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.40 16 2 C -0.05 -0.80 6.38 29.85 0.19 -0.61 16 3 C 0.03 0.66 6.69 25.48 0.17 0.83 16 4 O 0.09 2.12 11.06 76.96 0.85 2.97 16 5 N -0.38 -9.36 12.01 -44.78 -0.54 -9.89 16 6 C 0.05 1.16 7.59 45.15 0.34 1.50 16 7 C -0.08 -1.28 10.49 71.23 0.75 -0.53 16 8 C -0.26 -6.24 4.23 -18.74 -0.08 -6.32 16 9 C 0.61 15.24 7.49 86.66 0.65 15.88 16 10 O -0.56 -17.31 16.52 -4.06 -0.07 -17.38 16 11 N -0.59 -12.86 2.41 -822.86 -1.99 -14.85 16 12 C 0.12 2.56 6.34 86.36 0.55 3.11 16 13 C -0.12 -3.14 4.90 30.67 0.15 -2.99 16 14 C -0.08 -2.15 1.96 -10.76 -0.02 -2.17 16 15 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 16 C 0.16 5.83 5.18 86.38 0.45 6.28 16 17 N -0.74 -35.67 5.32 -343.46 -1.83 -37.50 16 18 C -0.24 -13.23 9.99 84.04 0.84 -12.39 16 19 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 21 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 22 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 C -0.09 -1.96 2.72 -10.73 -0.03 -1.99 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 C -0.14 -3.09 8.38 71.98 0.60 -2.49 16 29 C 0.12 2.43 5.83 86.35 0.50 2.93 16 30 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.60 7.65 -2.39 -0.02 1.58 16 35 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.76 6.25 -2.39 -0.01 1.74 16 40 H 0.06 2.04 7.15 -2.39 -0.02 2.02 16 41 H 0.07 1.80 6.34 -2.39 -0.02 1.79 16 42 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.02 0.82 6.74 -2.38 -0.02 0.80 16 44 H 0.38 19.03 6.85 -92.71 -0.63 18.40 16 45 H 0.25 14.54 8.31 -92.70 -0.77 13.76 16 46 H 0.06 1.31 6.58 -2.39 -0.02 1.30 16 47 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.13 5.51 -2.39 -0.01 1.11 16 49 H 0.09 1.98 7.00 -2.39 -0.02 1.96 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.83 396.87 5.30 -62.53 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.31 Total: 28.04 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 6.24 Total: -3.90 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -4.07 Total: -119.45 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.78 Total: -14.41 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.83 5.30 -62.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185651492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.866 kcal (2) G-P(sol) polarization free energy of solvation -67.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds