Wall clock time and date at job start Tue Mar 31 2020 20:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47230 * 2 1 4 4 N 1.30015 * 127.34211 * 270.04500 * 3 2 1 5 5 O 1.20653 * 112.30531 * 179.97438 * 4 3 2 6 6 C 1.33498 * 113.15447 * 359.71815 * 5 4 3 7 7 C 1.50705 * 126.82737 * 180.30964 * 6 5 4 8 8 C 1.37357 * 106.34285 * 0.44879 * 6 5 4 9 9 C 1.47399 * 128.56652 * 179.85536 * 8 6 5 10 10 O 1.21609 * 119.99650 * 269.68210 * 9 8 6 11 11 N 1.34773 * 119.99970 * 89.67806 * 9 8 6 12 12 C 1.46931 * 120.60493 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.53550 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.08995 * 109.45917 * 301.32981 * 14 13 12 16 16 C 1.53005 * 109.45951 * 181.36946 * 14 13 12 17 17 N 1.46495 * 109.47087 * 65.00121 * 16 14 13 18 18 C 1.36932 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00056 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47006 * 89.99910 * 22 20 18 24 24 H 1.48497 * 109.47108 * 210.00481 * 22 20 18 25 25 H 1.48504 * 109.46741 * 329.99970 * 22 20 18 26 26 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 27 27 H 1.09001 * 109.49436 * 178.68310 * 26 14 13 28 28 C 1.52997 * 109.49737 * 58.61885 * 26 14 13 29 29 C 1.46928 * 120.62770 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47522 * 59.99151 * 1 2 3 31 31 H 1.08990 * 109.47680 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47091 * 299.99841 * 1 2 3 33 33 H 1.09006 * 109.46642 * 240.00443 * 2 1 3 34 34 H 1.08993 * 109.47200 * 120.00799 * 2 1 3 35 35 H 1.09002 * 109.46770 * 270.16853 * 7 6 5 36 36 H 1.08994 * 109.46962 * 30.16472 * 7 6 5 37 37 H 1.08994 * 109.46932 * 150.17172 * 7 6 5 38 38 H 1.08996 * 109.56502 * 113.76244 * 12 11 9 39 39 H 1.09001 * 109.61713 * 353.33665 * 12 11 9 40 40 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 41 41 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 42 42 H 1.08992 * 109.47047 * 185.00063 * 16 14 13 43 43 H 1.09005 * 109.46671 * 305.00090 * 16 14 13 44 44 H 0.97003 * 119.99810 * 359.97438 * 17 16 14 45 45 H 0.96998 * 119.99881 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.47172 * 60.00149 * 28 26 14 47 47 H 1.09003 * 109.46963 * 180.02562 * 28 26 14 48 48 H 1.08998 * 109.47040 * 299.99727 * 28 26 14 49 49 H 1.08997 * 109.58597 * 6.64243 * 29 11 9 50 50 H 1.09001 * 109.69741 * 246.29061 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2945 2.1646 -1.0337 5 8 2.6827 3.2632 -0.7206 6 6 2.7404 3.4428 0.6010 7 6 3.1731 4.6917 1.3249 8 6 2.3300 2.2618 1.1697 9 6 2.2111 1.9228 2.5993 10 8 3.1552 1.4323 3.1884 11 7 1.0562 2.1566 3.2535 12 6 -0.0929 2.7482 2.5546 13 6 -0.5612 3.9820 3.3326 14 6 -0.8423 3.5889 4.7847 15 1 -1.6026 2.8083 4.8089 16 6 -1.3429 4.8117 5.5561 17 7 -2.6351 5.2366 5.0124 18 6 -3.2810 6.3186 5.5484 19 1 -2.8376 6.8589 6.3717 20 6 -4.5058 6.7209 5.0336 21 7 -5.1264 7.7611 5.5484 22 14 -5.2732 5.7859 3.6101 23 1 -6.1337 4.6975 4.1393 24 1 -6.0956 6.7147 2.7938 25 1 -4.2002 5.2023 2.7655 26 6 0.4433 3.0688 5.4321 27 1 0.2478 2.8110 6.4730 28 6 1.5217 4.1522 5.3682 29 6 0.9227 1.8246 4.6785 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 4.2483 4.6559 1.5003 36 1 2.9329 5.5649 0.7184 37 1 2.6513 4.7576 2.2795 38 1 -0.9025 2.0203 2.5021 39 1 0.2030 3.0420 1.5474 40 1 -1.4715 4.3742 2.8791 41 1 0.2164 4.7454 3.3064 42 1 -1.4584 4.5548 6.6090 43 1 -0.6223 5.6236 5.4571 44 1 -3.0332 4.7515 4.2727 45 1 -5.9824 8.0420 5.1889 46 1 1.1787 5.0382 5.9026 47 1 2.4372 3.7812 5.8291 48 1 1.7176 4.4089 4.3272 49 1 1.8887 1.5087 5.0721 50 1 0.1971 1.0206 4.8020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185674743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:38 Heat of formation + Delta-G solvation = 24.998733 kcal Electronic energy + Delta-G solvation = -30789.768630 eV Core-core repulsion = 26820.232017 eV Total energy + Delta-G solvation = -3969.536613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.13792 -40.55282 -38.25479 -35.65864 -35.17257 -34.04864 -33.32871 -31.93122 -31.63397 -30.75838 -28.48488 -27.39357 -27.11340 -25.09920 -24.21429 -23.29212 -23.08599 -21.38060 -20.59499 -19.94010 -18.62471 -18.17622 -17.86875 -17.44156 -16.69442 -16.12959 -15.63242 -15.09867 -14.87800 -14.67112 -14.39591 -14.22376 -14.13967 -13.89927 -13.74209 -13.60200 -13.42442 -13.12716 -13.02585 -12.85160 -12.76155 -12.49924 -12.40335 -11.95264 -11.83180 -11.73784 -11.58330 -11.44024 -11.21534 -11.09694 -10.88454 -10.55918 -10.46258 -10.32663 -10.23911 -10.14823 -10.06644 -9.61959 -9.57063 -8.92871 -8.80692 -7.26166 -5.80476 -3.15844 1.04303 1.64122 2.16748 2.51672 2.90822 3.31121 3.34398 3.41158 3.71853 3.94915 4.28331 4.54626 4.60155 4.62684 4.73912 4.75610 4.82947 4.88000 4.92743 4.94835 5.04075 5.04194 5.07910 5.20686 5.28209 5.37439 5.45928 5.48290 5.50849 5.55130 5.59100 5.61892 5.66353 5.67252 5.70668 5.76214 5.84599 5.86948 6.03047 6.09679 6.21363 6.23340 6.28754 6.44514 6.64463 6.76279 7.11630 7.86215 7.95971 7.96067 8.38662 9.17799 9.90048 10.09740 11.38137 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003458 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.741610 B = 8095.689196 C = 8735.918799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.057 3.943 4 N -0.353 5.353 5 O 0.097 5.903 6 C 0.019 3.981 7 C -0.081 4.081 8 C -0.246 4.246 9 C 0.602 3.398 10 O -0.531 6.531 11 N -0.592 5.592 12 C 0.107 3.893 13 C -0.129 4.129 14 C -0.093 4.093 15 H 0.072 0.928 16 C 0.163 3.837 17 N -0.756 5.756 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.098 4.098 27 H 0.086 0.914 28 C -0.146 4.146 29 C 0.116 3.884 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.027 0.973 43 H 0.030 0.970 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.327 -13.841 -9.271 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.106 4.106 4 N -0.059 5.059 5 O 0.035 5.965 6 C -0.044 4.044 7 C -0.138 4.138 8 C -0.253 4.253 9 C 0.388 3.612 10 O -0.408 6.408 11 N -0.325 5.325 12 C -0.016 4.016 13 C -0.167 4.167 14 C -0.112 4.112 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.401 5.401 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.582 5.582 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.117 4.117 27 H 0.104 0.896 28 C -0.203 4.203 29 C -0.005 4.005 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.192 0.808 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.717 -14.064 -10.118 24.075 hybrid contribution -0.847 -0.587 -0.318 1.078 sum 15.870 -14.651 -10.436 23.988 Atomic orbital electron populations 1.21766 0.93364 1.02756 1.02751 1.19997 0.96784 0.87527 1.04199 1.24730 1.00612 0.98747 0.86469 1.73607 1.16409 0.92544 1.23337 1.84543 1.62753 1.26630 1.22580 1.24634 0.98717 0.97377 0.83703 1.20515 1.03175 0.90724 0.99424 1.21832 1.12997 0.95180 0.95313 1.16885 0.82383 0.78026 0.83903 1.90806 1.37976 1.44049 1.67933 1.48010 1.12307 1.61192 1.10949 1.21870 0.87841 0.95913 0.95976 1.22006 1.02486 0.96496 0.95734 1.21375 0.96140 0.99088 0.94606 0.90984 1.20688 0.87592 0.92882 0.95231 1.42729 1.20922 1.35897 1.40579 1.19057 1.00781 1.03877 1.13635 0.89277 1.24670 0.97388 0.97848 0.99228 1.69697 1.17111 1.27383 1.44044 0.86566 0.79239 0.79521 0.83238 1.21113 1.21742 1.20427 1.21461 0.95518 0.94994 0.99740 0.89559 1.21886 0.97704 0.98898 1.01858 1.21757 1.02820 0.96964 0.78996 0.92115 0.91278 0.92087 0.89511 0.89434 0.88587 0.88805 0.88741 0.91015 0.90332 0.89928 0.90923 0.95536 0.95260 0.80761 0.93050 0.91611 0.93049 0.92841 0.88827 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.42 6.54 -27.88 -0.18 -0.60 16 3 C 0.06 0.64 6.84 -79.76 -0.55 0.10 16 4 N -0.35 -4.32 12.01 34.78 0.42 -3.90 16 5 O 0.10 1.10 11.06 18.64 0.21 1.30 16 6 C 0.02 0.20 7.43 -34.63 -0.26 -0.06 16 7 C -0.08 -0.59 10.33 36.01 0.37 -0.22 16 8 C -0.25 -2.84 4.23 -102.89 -0.44 -3.28 16 9 C 0.60 7.48 7.49 -12.53 -0.09 7.39 16 10 O -0.53 -8.17 16.52 5.27 0.09 -8.08 16 11 N -0.59 -6.44 2.41 -174.06 -0.42 -6.86 16 12 C 0.11 1.12 5.98 -3.71 -0.02 1.10 16 13 C -0.13 -1.61 4.90 -26.61 -0.13 -1.74 16 14 C -0.09 -1.23 1.96 -90.57 -0.18 -1.40 16 15 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 16 C 0.16 2.87 5.18 -4.04 -0.02 2.85 16 17 N -0.76 -16.91 5.12 -59.91 -0.31 -17.22 16 18 C -0.24 -6.70 10.47 -15.06 -0.16 -6.86 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 22 Si 0.88 21.46 27.74 -169.99 -4.71 16.75 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 26 C -0.10 -1.07 2.72 -90.52 -0.25 -1.31 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 28 C -0.15 -1.61 8.38 37.16 0.31 -1.30 16 29 C 0.12 1.21 5.83 -3.73 -0.02 1.19 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 7.35 -51.93 -0.38 0.13 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.72 7.65 -51.93 -0.40 0.32 16 38 H 0.07 0.71 7.72 -51.93 -0.40 0.31 16 39 H 0.08 0.82 6.25 -51.93 -0.32 0.49 16 40 H 0.08 1.19 7.15 -51.93 -0.37 0.82 16 41 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.03 0.53 6.74 -51.93 -0.35 0.18 16 44 H 0.36 7.80 4.71 -40.82 -0.19 7.60 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.59 5.51 -51.93 -0.29 0.30 16 49 H 0.09 1.04 7.00 -51.93 -0.36 0.67 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -33.17 392.18 -7.36 -40.53 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.98 Total: 4.63 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.34 Total: -4.92 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.47 Total: -56.12 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.29 Total: -6.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.17 -7.36 -40.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185674743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.531 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds