Wall clock time and date at job start Tue Mar 31 2020 20:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47230 * 2 1 4 4 N 1.30015 * 127.34211 * 270.04500 * 3 2 1 5 5 O 1.20653 * 112.30531 * 179.97438 * 4 3 2 6 6 C 1.33498 * 113.15447 * 359.71815 * 5 4 3 7 7 C 1.50705 * 126.82737 * 180.30964 * 6 5 4 8 8 C 1.37357 * 106.34285 * 0.44879 * 6 5 4 9 9 C 1.47399 * 128.56652 * 179.85536 * 8 6 5 10 10 O 1.21609 * 119.99650 * 269.68210 * 9 8 6 11 11 N 1.34773 * 119.99970 * 89.67806 * 9 8 6 12 12 C 1.46931 * 120.60493 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.53550 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.08995 * 109.45917 * 301.32981 * 14 13 12 16 16 C 1.53005 * 109.45951 * 181.36946 * 14 13 12 17 17 N 1.46495 * 109.47087 * 65.00121 * 16 14 13 18 18 C 1.36932 * 120.00120 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00056 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47006 * 89.99910 * 22 20 18 24 24 H 1.48497 * 109.47108 * 210.00481 * 22 20 18 25 25 H 1.48504 * 109.46741 * 329.99970 * 22 20 18 26 26 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 27 27 H 1.09001 * 109.49436 * 178.68310 * 26 14 13 28 28 C 1.52997 * 109.49737 * 58.61885 * 26 14 13 29 29 C 1.46928 * 120.62770 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47522 * 59.99151 * 1 2 3 31 31 H 1.08990 * 109.47680 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47091 * 299.99841 * 1 2 3 33 33 H 1.09006 * 109.46642 * 240.00443 * 2 1 3 34 34 H 1.08993 * 109.47200 * 120.00799 * 2 1 3 35 35 H 1.09002 * 109.46770 * 270.16853 * 7 6 5 36 36 H 1.08994 * 109.46962 * 30.16472 * 7 6 5 37 37 H 1.08994 * 109.46932 * 150.17172 * 7 6 5 38 38 H 1.08996 * 109.56502 * 113.76244 * 12 11 9 39 39 H 1.09001 * 109.61713 * 353.33665 * 12 11 9 40 40 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 41 41 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 42 42 H 1.08992 * 109.47047 * 185.00063 * 16 14 13 43 43 H 1.09005 * 109.46671 * 305.00090 * 16 14 13 44 44 H 0.97003 * 119.99810 * 359.97438 * 17 16 14 45 45 H 0.96998 * 119.99881 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.47172 * 60.00149 * 28 26 14 47 47 H 1.09003 * 109.46963 * 180.02562 * 28 26 14 48 48 H 1.08998 * 109.47040 * 299.99727 * 28 26 14 49 49 H 1.08997 * 109.58597 * 6.64243 * 29 11 9 50 50 H 1.09001 * 109.69741 * 246.29061 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2945 2.1646 -1.0337 5 8 2.6827 3.2632 -0.7206 6 6 2.7404 3.4428 0.6010 7 6 3.1731 4.6917 1.3249 8 6 2.3300 2.2618 1.1697 9 6 2.2111 1.9228 2.5993 10 8 3.1552 1.4323 3.1884 11 7 1.0562 2.1566 3.2535 12 6 -0.0929 2.7482 2.5546 13 6 -0.5612 3.9820 3.3326 14 6 -0.8423 3.5889 4.7847 15 1 -1.6026 2.8083 4.8089 16 6 -1.3429 4.8117 5.5561 17 7 -2.6351 5.2366 5.0124 18 6 -3.2810 6.3186 5.5484 19 1 -2.8376 6.8589 6.3717 20 6 -4.5058 6.7209 5.0336 21 7 -5.1264 7.7611 5.5484 22 14 -5.2732 5.7859 3.6101 23 1 -6.1337 4.6975 4.1393 24 1 -6.0956 6.7147 2.7938 25 1 -4.2002 5.2023 2.7655 26 6 0.4433 3.0688 5.4321 27 1 0.2478 2.8110 6.4730 28 6 1.5217 4.1522 5.3682 29 6 0.9227 1.8246 4.6785 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 4.2483 4.6559 1.5003 36 1 2.9329 5.5649 0.7184 37 1 2.6513 4.7576 2.2795 38 1 -0.9025 2.0203 2.5021 39 1 0.2030 3.0420 1.5474 40 1 -1.4715 4.3742 2.8791 41 1 0.2164 4.7454 3.3064 42 1 -1.4584 4.5548 6.6090 43 1 -0.6223 5.6236 5.4571 44 1 -3.0332 4.7515 4.2727 45 1 -5.9824 8.0420 5.1889 46 1 1.1787 5.0382 5.9026 47 1 2.4372 3.7812 5.8291 48 1 1.7176 4.4089 4.3272 49 1 1.8887 1.5087 5.0721 50 1 0.1971 1.0206 4.8020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185674743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:37 Heat of formation + Delta-G solvation = 5.376566 kcal Electronic energy + Delta-G solvation = -30790.619512 eV Core-core repulsion = 26820.232017 eV Total energy + Delta-G solvation = -3970.387494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.97278 -41.50825 -39.32596 -36.70027 -36.41314 -35.02374 -34.47218 -33.36375 -32.37260 -32.26577 -29.27625 -28.68771 -28.01990 -25.98905 -25.32947 -24.48713 -24.15992 -22.79011 -21.50584 -20.79432 -19.97407 -19.29564 -18.86930 -18.64799 -17.62307 -17.01898 -16.75568 -16.45281 -15.98490 -15.75480 -15.44592 -15.33910 -15.22432 -14.86043 -14.79093 -14.65898 -14.29581 -14.19405 -14.04961 -13.78891 -13.73662 -13.54566 -13.50542 -13.24958 -12.88178 -12.68706 -12.61243 -12.55401 -12.44825 -12.16093 -12.08466 -11.86882 -11.83841 -11.56979 -11.49816 -11.30280 -11.19450 -10.98393 -10.90792 -10.39256 -9.73729 -9.24797 -8.00432 -5.33235 0.24085 0.81071 1.23569 1.38101 1.42923 1.50243 1.69141 2.08016 2.50457 2.94570 3.18513 3.31464 3.44393 3.56848 3.71439 3.79822 3.86720 3.99461 4.07607 4.10590 4.22326 4.23331 4.27794 4.32362 4.38066 4.40878 4.51321 4.59977 4.68330 4.70962 4.76007 4.80731 4.82901 4.83624 4.90740 4.98001 4.98116 5.01490 5.08466 5.15974 5.19081 5.24270 5.28581 5.29773 5.47988 5.60298 5.79085 6.20417 6.23752 6.93588 7.11522 7.14256 7.88061 8.07377 9.21468 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003458 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.741610 B = 8095.689196 C = 8735.918799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.056 3.944 4 N -0.374 5.374 5 O 0.090 5.910 6 C 0.029 3.971 7 C -0.083 4.083 8 C -0.268 4.268 9 C 0.609 3.391 10 O -0.564 6.564 11 N -0.585 5.585 12 C 0.115 3.885 13 C -0.126 4.126 14 C -0.082 4.082 15 H 0.079 0.921 16 C 0.161 3.839 17 N -0.755 5.755 18 C -0.232 4.232 19 H 0.053 0.947 20 C -0.065 4.065 21 N -0.987 5.987 22 Si 0.953 3.047 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.244 1.244 26 C -0.090 4.090 27 H 0.096 0.904 28 C -0.144 4.144 29 C 0.119 3.881 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.025 0.975 44 H 0.366 0.634 45 H 0.257 0.743 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.090 0.910 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.807 -15.839 -10.593 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.106 4.106 4 N -0.082 5.082 5 O 0.030 5.970 6 C -0.035 4.035 7 C -0.140 4.140 8 C -0.275 4.275 9 C 0.395 3.605 10 O -0.444 6.444 11 N -0.316 5.316 12 C -0.008 4.008 13 C -0.164 4.164 14 C -0.101 4.101 15 H 0.097 0.903 16 C 0.035 3.965 17 N -0.401 5.401 18 C -0.364 4.364 19 H 0.071 0.929 20 C -0.256 4.256 21 N -0.638 5.638 22 Si 0.780 3.220 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.169 1.169 26 C -0.109 4.109 27 H 0.114 0.886 28 C -0.202 4.202 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.235 -16.084 -11.443 26.204 hybrid contribution -0.909 0.101 0.202 0.937 sum 16.325 -15.983 -11.241 25.462 Atomic orbital electron populations 1.21738 0.92378 1.03759 1.02260 1.20112 0.97562 0.86327 1.04613 1.25122 0.99865 0.99502 0.86157 1.73598 1.17559 0.93033 1.23962 1.84522 1.62887 1.26507 1.23062 1.25130 0.97117 0.97905 0.83327 1.20691 1.03899 0.90145 0.99219 1.21847 1.14691 0.95981 0.95017 1.16912 0.82108 0.77385 0.84051 1.90790 1.39097 1.45750 1.68718 1.48008 1.11986 1.60483 1.11142 1.21823 0.87947 0.95342 0.95646 1.21936 1.01840 0.97401 0.95208 1.21262 0.97239 0.97005 0.94616 0.90299 1.20840 0.85467 0.94706 0.95460 1.42708 1.22221 1.34560 1.40647 1.19034 1.00679 1.04435 1.12207 0.92877 1.25517 0.98229 0.99153 1.02729 1.69892 1.17701 1.29839 1.46326 0.85434 0.78808 0.77939 0.79771 1.20520 1.22632 1.16851 1.21405 0.94175 0.95137 1.00226 0.88596 1.21858 0.98043 0.98518 1.01733 1.21789 1.03114 0.96922 0.78429 0.92646 0.89563 0.92430 0.88686 0.89395 0.87243 0.86898 0.88945 0.89496 0.89976 0.91384 0.91006 0.96106 0.95668 0.79984 0.93433 0.92724 0.92351 0.92885 0.89208 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.22 16 2 C -0.05 -0.78 6.54 29.85 0.20 -0.58 16 3 C 0.06 1.19 6.84 45.16 0.31 1.50 16 4 N -0.37 -8.71 12.01 -44.77 -0.54 -9.25 16 5 O 0.09 1.93 11.06 76.95 0.85 2.78 16 6 C 0.03 0.55 7.43 25.48 0.19 0.73 16 7 C -0.08 -1.04 10.33 71.24 0.74 -0.30 16 8 C -0.27 -5.78 4.23 -18.74 -0.08 -5.86 16 9 C 0.61 14.04 7.49 86.66 0.65 14.68 16 10 O -0.56 -16.63 16.52 -4.06 -0.07 -16.70 16 11 N -0.59 -11.28 2.41 -822.86 -1.99 -13.27 16 12 C 0.11 2.09 5.98 86.36 0.52 2.60 16 13 C -0.13 -2.81 4.90 30.67 0.15 -2.66 16 14 C -0.08 -1.97 1.96 -10.76 -0.02 -1.99 16 15 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.16 5.48 5.18 86.38 0.45 5.93 16 17 N -0.76 -32.90 5.12 -343.46 -1.76 -34.66 16 18 C -0.23 -12.89 10.47 84.04 0.88 -12.01 16 19 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 20 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 21 N -0.99 -62.57 13.97 21.65 0.30 -62.27 16 22 Si 0.95 43.71 27.74 68.60 1.90 45.61 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.24 -9.72 6.52 99.48 0.65 -9.07 16 26 C -0.09 -1.75 2.72 -10.73 -0.03 -1.78 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 C -0.14 -2.93 8.38 71.98 0.60 -2.32 16 29 C 0.12 2.15 5.83 86.35 0.50 2.65 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.81 7.35 -2.38 -0.02 0.79 16 33 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.23 7.65 -2.39 -0.02 1.21 16 38 H 0.09 1.38 7.72 -2.39 -0.02 1.37 16 39 H 0.08 1.50 6.25 -2.39 -0.01 1.48 16 40 H 0.07 1.76 7.15 -2.39 -0.02 1.75 16 41 H 0.07 1.62 6.34 -2.39 -0.02 1.61 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.03 0.90 6.74 -2.38 -0.02 0.88 16 44 H 0.37 14.96 4.71 -92.71 -0.44 14.52 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.05 1.22 6.58 -2.39 -0.02 1.21 16 47 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.05 1.07 5.51 -2.39 -0.01 1.06 16 49 H 0.09 1.78 7.00 -2.39 -0.02 1.76 16 50 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.57 392.18 5.39 -67.18 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.45 Total: 24.48 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 6.23 Total: -3.91 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -3.98 Total: -119.44 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.78 Total: -13.92 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.61 kcal Total: -72.57 5.39 -67.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185674743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.558 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds