Wall clock time and date at job start Tue Mar 31 2020 19:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47104 * 119.99877 * 2 1 4 4 O 1.21613 * 120.00212 * 80.55356 * 3 2 1 5 5 N 1.34774 * 120.00005 * 260.55755 * 3 2 1 6 6 C 1.47029 * 125.64874 * 354.98071 * 5 3 2 7 7 C 1.54320 * 107.26990 * 181.09947 * 6 5 3 8 8 C 1.55154 * 102.94753 * 22.19271 * 7 6 5 9 9 H 1.08995 * 111.03691 * 82.58426 * 8 7 6 10 10 N 1.46893 * 111.00597 * 206.42646 * 8 7 6 11 11 C 1.46894 * 111.00092 * 168.24234 * 10 8 7 12 12 C 1.46898 * 110.99821 * 292.19340 * 10 8 7 13 13 C 1.50699 * 109.47188 * 170.00259 * 12 10 8 14 14 O 1.21291 * 120.00068 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99992 * 180.02562 * 13 12 10 16 16 C 1.37103 * 119.99930 * 180.27487 * 15 13 12 17 17 H 1.07995 * 119.99825 * 359.71959 * 16 15 13 18 18 C 1.38946 * 119.99760 * 179.72572 * 16 15 13 19 19 N 1.31405 * 120.00396 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47291 * 119.99607 * 20 18 16 23 23 H 1.48498 * 109.47137 * 239.99579 * 20 18 16 24 24 C 1.47423 * 125.65246 * 175.02762 * 5 3 2 25 25 C 1.32991 * 120.00134 * 179.97438 * 2 1 3 26 26 C 1.51401 * 136.31620 * 179.63083 * 25 2 1 27 27 C 1.53374 * 87.52027 * 206.05567 * 26 25 2 28 28 C 1.51407 * 136.31588 * 359.97438 * 25 2 1 29 29 H 1.09003 * 109.47219 * 95.08640 * 1 2 3 30 30 H 1.09000 * 109.46866 * 215.08572 * 1 2 3 31 31 H 1.09000 * 109.47317 * 335.08761 * 1 2 3 32 32 H 1.09000 * 109.87781 * 300.51808 * 6 5 3 33 33 H 1.08999 * 109.88210 * 61.52309 * 6 5 3 34 34 H 1.09004 * 110.72030 * 263.82630 * 7 6 5 35 35 H 1.09009 * 110.71771 * 140.56005 * 7 6 5 36 36 H 1.09002 * 109.47346 * 183.95130 * 11 10 8 37 37 H 1.09004 * 109.47104 * 303.95058 * 11 10 8 38 38 H 1.09006 * 109.47521 * 63.94959 * 11 10 8 39 39 H 1.09003 * 109.47320 * 49.99944 * 12 10 8 40 40 H 1.09000 * 109.47462 * 290.00403 * 12 10 8 41 41 H 0.96998 * 120.00151 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00214 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36464 * 36.99112 * 24 5 3 44 44 H 1.09003 * 110.45899 * 274.72113 * 24 5 3 45 45 H 1.09002 * 113.56196 * 320.63989 * 26 25 2 46 46 H 1.09000 * 113.56608 * 91.36924 * 26 25 2 47 47 H 1.08998 * 113.97279 * 220.29318 * 27 26 25 48 48 H 1.09005 * 113.70998 * 88.80302 * 27 26 25 49 49 H 1.08996 * 113.56180 * 268.62975 * 28 25 2 50 50 H 1.09001 * 113.55967 * 39.28640 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3968 1.8870 1.0389 5 7 2.7453 1.7618 -1.1514 6 6 2.7234 1.0790 -2.4533 7 6 3.4336 2.0014 -3.4664 8 6 4.3146 2.9007 -2.5595 9 1 5.2474 2.4001 -2.2999 10 7 4.5762 4.1973 -3.1984 11 6 5.1648 5.1456 -2.2434 12 6 5.4349 4.0383 -4.3796 13 6 5.4815 5.3356 -5.1450 14 8 4.8601 6.2978 -4.7461 15 7 6.2129 5.4264 -6.2735 16 6 6.2598 6.6083 -6.9668 17 1 5.7071 7.4652 -6.6111 18 6 7.0184 6.7035 -8.1270 19 7 7.6912 5.6609 -8.5595 20 14 7.0829 8.3140 -9.0712 21 1 6.2447 9.3267 -8.3804 22 1 8.4867 8.7938 -9.1363 23 1 6.5680 8.1017 -10.4478 24 6 3.4091 3.0681 -1.3139 25 6 2.1720 -1.1517 0.0005 26 6 3.6250 -1.5770 -0.0060 27 6 3.1709 -2.8820 -0.6718 28 6 1.8138 -2.6228 0.0016 29 1 -0.3634 -0.0911 -1.0236 30 1 -0.3633 -0.8409 0.5907 31 1 -0.3634 0.9320 0.4329 32 1 3.2529 0.1289 -2.3824 33 1 1.6930 0.9067 -2.7642 34 1 2.7083 2.6011 -4.0163 35 1 4.0520 1.4196 -4.1500 36 1 5.2834 6.1174 -2.7226 37 1 4.5089 5.2446 -1.3785 38 1 6.1390 4.7784 -1.9204 39 1 5.0314 3.2533 -5.0193 40 1 6.4420 3.7670 -4.0629 41 1 6.7096 4.6568 -6.5928 42 1 8.2211 5.7275 -9.3693 43 1 4.0113 3.2994 -0.4353 44 1 2.6710 3.8520 -1.4840 45 1 4.2567 -0.9604 -0.6455 46 1 4.0421 -1.7187 0.9910 47 1 3.6835 -3.7698 -0.3015 48 1 3.1395 -2.8310 -1.7602 49 1 1.7344 -3.0511 1.0008 50 1 0.9592 -2.8636 -0.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190023389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:03 Heat of formation + Delta-G solvation = -17.734414 kcal Electronic energy + Delta-G solvation = -29091.800535 eV Core-core repulsion = 25120.410874 eV Total energy + Delta-G solvation = -3971.389661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53454 -39.16493 -38.51073 -37.60149 -35.45531 -33.85360 -33.37902 -31.26597 -30.88523 -29.29214 -27.54272 -26.98169 -25.91148 -25.45245 -24.29116 -23.07370 -22.32548 -20.41851 -20.07296 -19.15051 -18.26423 -17.86604 -16.85507 -16.78473 -16.04888 -15.81508 -15.57170 -15.46536 -14.77084 -14.63278 -14.35544 -13.91198 -13.77535 -13.70525 -13.50453 -13.42961 -13.22652 -12.90988 -12.85846 -12.71109 -12.44885 -12.30838 -12.21384 -12.01246 -11.89674 -11.52242 -11.44003 -11.33705 -11.15713 -11.03137 -10.95979 -10.80668 -10.78050 -10.35052 -10.23658 -9.96896 -9.50074 -9.13021 -8.82033 -8.49042 -8.00416 -7.90143 -6.43133 -3.83786 1.40861 2.40406 2.78482 3.15353 3.26195 3.33343 3.87554 3.89312 3.94295 4.10282 4.22159 4.27560 4.35444 4.51996 4.67585 4.72297 4.87801 4.99669 5.05363 5.12115 5.17566 5.20883 5.23961 5.26510 5.28301 5.34926 5.37738 5.45799 5.51468 5.57314 5.61525 5.65037 5.70955 5.77862 5.82002 5.84336 5.86493 5.88640 5.94711 6.06308 6.14271 6.26749 6.39578 6.54806 7.17555 7.31727 7.33324 7.54403 7.94958 8.05396 8.60453 9.17166 9.53087 10.04854 10.74690 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002089 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.731529 B =13400.887246 C =13980.997136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.135 4.135 3 C 0.579 3.421 4 O -0.537 6.537 5 N -0.611 5.611 6 C 0.106 3.894 7 C -0.126 4.126 8 C 0.069 3.931 9 H 0.055 0.945 10 N -0.506 5.506 11 C 0.018 3.982 12 C 0.046 3.954 13 C 0.445 3.555 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.114 3.886 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.136 4.136 28 C -0.099 4.099 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -19.445 13.523 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.368 3.632 4 O -0.414 6.414 5 N -0.345 5.345 6 C -0.018 4.018 7 C -0.164 4.164 8 C -0.041 4.041 9 H 0.072 0.928 10 N -0.230 5.230 11 C -0.129 4.129 12 C -0.085 4.085 13 C 0.230 3.770 14 O -0.460 6.460 15 N -0.201 5.201 16 C -0.427 4.427 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.008 4.008 25 C -0.121 4.121 26 C -0.146 4.146 27 C -0.173 4.173 28 C -0.136 4.136 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.113 0.887 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.059 -18.307 14.092 25.197 hybrid contribution 1.289 -0.105 -0.591 1.422 sum -8.770 -18.412 13.500 24.457 Atomic orbital electron populations 1.20548 0.89132 1.03258 1.02433 1.20372 0.96431 0.90702 1.06261 1.17995 0.78162 0.84941 0.82117 1.90822 1.59086 1.60554 1.30973 1.48447 1.58080 1.19482 1.08537 1.22050 1.01146 0.96041 0.82515 1.22745 0.99460 0.97202 0.97001 1.22770 0.96852 0.90875 0.93573 0.92759 1.61637 1.47348 1.07408 1.06656 1.22603 0.96108 0.98802 0.95419 1.21877 0.95425 0.98471 0.92744 1.19696 0.84354 0.89416 0.83537 1.90489 1.47290 1.39041 1.69216 1.41871 1.42806 1.13821 1.21650 1.19743 1.27411 0.90768 1.04747 0.87845 1.25256 0.96414 0.98889 0.97439 1.69614 1.30939 1.29707 1.24104 0.85809 0.77997 0.81474 0.79124 1.19209 1.20796 1.20758 1.22250 0.95946 0.85054 0.97570 1.23031 0.97632 0.93860 0.97592 1.22201 0.93721 0.96968 1.01734 1.22646 0.96666 0.97612 1.00416 1.22173 0.98338 0.91523 1.01555 0.90937 0.91015 0.91260 0.91502 0.91079 0.88827 0.89869 0.88222 0.91968 0.96546 0.89293 0.93408 0.77526 0.91940 0.90446 0.89849 0.90869 0.88635 0.90479 0.89575 0.88670 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.96 36.01 0.36 -0.40 16 2 C -0.13 -1.36 4.94 -102.85 -0.51 -1.87 16 3 C 0.58 7.65 7.12 -12.66 -0.09 7.56 16 4 O -0.54 -9.19 17.34 5.27 0.09 -9.09 16 5 N -0.61 -7.26 3.33 -171.91 -0.57 -7.83 16 6 C 0.11 0.98 6.46 -3.06 -0.02 0.96 16 7 C -0.13 -1.31 5.61 -24.90 -0.14 -1.45 16 8 C 0.07 0.86 2.71 -65.57 -0.18 0.69 16 9 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 10 N -0.51 -8.07 4.40 -233.75 -1.03 -9.10 16 11 C 0.02 0.29 8.98 60.06 0.54 0.83 16 12 C 0.05 0.79 5.35 -4.98 -0.03 0.76 16 13 C 0.44 10.19 7.51 -10.98 -0.08 10.11 16 14 O -0.58 -15.16 13.89 5.55 0.08 -15.08 16 15 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 16 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.11 1.47 5.08 -2.53 -0.01 1.46 16 25 C -0.12 -1.01 6.64 -100.49 -0.67 -1.68 16 26 C -0.11 -0.83 7.83 -27.56 -0.22 -1.05 16 27 C -0.14 -0.76 8.17 -26.18 -0.21 -0.97 16 28 C -0.10 -0.58 7.81 -27.39 -0.21 -0.79 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.75 7.91 -51.92 -0.41 0.34 16 36 H 0.10 1.94 5.88 -51.93 -0.31 1.64 16 37 H 0.06 0.89 6.76 -51.93 -0.35 0.54 16 38 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 40 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 44 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 45 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -32.85 405.42 -9.77 -42.61 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.38 Total: 7.77 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.71 Total: 6.34 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.93 Total: -54.49 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.17 Total: -24.17 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.85 -9.77 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190023389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.879 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds