Wall clock time and date at job start Tue Mar 31 2020 19:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47104 * 119.99877 * 2 1 4 4 O 1.21613 * 120.00212 * 80.55356 * 3 2 1 5 5 N 1.34774 * 120.00005 * 260.55755 * 3 2 1 6 6 C 1.47029 * 125.64874 * 354.98071 * 5 3 2 7 7 C 1.54320 * 107.26990 * 181.09947 * 6 5 3 8 8 C 1.55154 * 102.94753 * 22.19271 * 7 6 5 9 9 H 1.08995 * 111.03691 * 82.58426 * 8 7 6 10 10 N 1.46893 * 111.00597 * 206.42646 * 8 7 6 11 11 C 1.46894 * 111.00092 * 168.24234 * 10 8 7 12 12 C 1.46898 * 110.99821 * 292.19340 * 10 8 7 13 13 C 1.50699 * 109.47188 * 170.00259 * 12 10 8 14 14 O 1.21291 * 120.00068 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99992 * 180.02562 * 13 12 10 16 16 C 1.37103 * 119.99930 * 180.27487 * 15 13 12 17 17 H 1.07995 * 119.99825 * 359.71959 * 16 15 13 18 18 C 1.38946 * 119.99760 * 179.72572 * 16 15 13 19 19 N 1.31405 * 120.00396 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47159 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47291 * 119.99607 * 20 18 16 23 23 H 1.48498 * 109.47137 * 239.99579 * 20 18 16 24 24 C 1.47423 * 125.65246 * 175.02762 * 5 3 2 25 25 C 1.32991 * 120.00134 * 179.97438 * 2 1 3 26 26 C 1.51401 * 136.31620 * 179.63083 * 25 2 1 27 27 C 1.53374 * 87.52027 * 206.05567 * 26 25 2 28 28 C 1.51407 * 136.31588 * 359.97438 * 25 2 1 29 29 H 1.09003 * 109.47219 * 95.08640 * 1 2 3 30 30 H 1.09000 * 109.46866 * 215.08572 * 1 2 3 31 31 H 1.09000 * 109.47317 * 335.08761 * 1 2 3 32 32 H 1.09000 * 109.87781 * 300.51808 * 6 5 3 33 33 H 1.08999 * 109.88210 * 61.52309 * 6 5 3 34 34 H 1.09004 * 110.72030 * 263.82630 * 7 6 5 35 35 H 1.09009 * 110.71771 * 140.56005 * 7 6 5 36 36 H 1.09002 * 109.47346 * 183.95130 * 11 10 8 37 37 H 1.09004 * 109.47104 * 303.95058 * 11 10 8 38 38 H 1.09006 * 109.47521 * 63.94959 * 11 10 8 39 39 H 1.09003 * 109.47320 * 49.99944 * 12 10 8 40 40 H 1.09000 * 109.47462 * 290.00403 * 12 10 8 41 41 H 0.96998 * 120.00151 * 359.97438 * 15 13 12 42 42 H 0.97001 * 120.00214 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36464 * 36.99112 * 24 5 3 44 44 H 1.09003 * 110.45899 * 274.72113 * 24 5 3 45 45 H 1.09002 * 113.56196 * 320.63989 * 26 25 2 46 46 H 1.09000 * 113.56608 * 91.36924 * 26 25 2 47 47 H 1.08998 * 113.97279 * 220.29318 * 27 26 25 48 48 H 1.09005 * 113.70998 * 88.80302 * 27 26 25 49 49 H 1.08996 * 113.56180 * 268.62975 * 28 25 2 50 50 H 1.09001 * 113.55967 * 39.28640 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3968 1.8870 1.0389 5 7 2.7453 1.7618 -1.1514 6 6 2.7234 1.0790 -2.4533 7 6 3.4336 2.0014 -3.4664 8 6 4.3146 2.9007 -2.5595 9 1 5.2474 2.4001 -2.2999 10 7 4.5762 4.1973 -3.1984 11 6 5.1648 5.1456 -2.2434 12 6 5.4349 4.0383 -4.3796 13 6 5.4815 5.3356 -5.1450 14 8 4.8601 6.2978 -4.7461 15 7 6.2129 5.4264 -6.2735 16 6 6.2598 6.6083 -6.9668 17 1 5.7071 7.4652 -6.6111 18 6 7.0184 6.7035 -8.1270 19 7 7.6912 5.6609 -8.5595 20 14 7.0829 8.3140 -9.0712 21 1 6.2447 9.3267 -8.3804 22 1 8.4867 8.7938 -9.1363 23 1 6.5680 8.1017 -10.4478 24 6 3.4091 3.0681 -1.3139 25 6 2.1720 -1.1517 0.0005 26 6 3.6250 -1.5770 -0.0060 27 6 3.1709 -2.8820 -0.6718 28 6 1.8138 -2.6228 0.0016 29 1 -0.3634 -0.0911 -1.0236 30 1 -0.3633 -0.8409 0.5907 31 1 -0.3634 0.9320 0.4329 32 1 3.2529 0.1289 -2.3824 33 1 1.6930 0.9067 -2.7642 34 1 2.7083 2.6011 -4.0163 35 1 4.0520 1.4196 -4.1500 36 1 5.2834 6.1174 -2.7226 37 1 4.5089 5.2446 -1.3785 38 1 6.1390 4.7784 -1.9204 39 1 5.0314 3.2533 -5.0193 40 1 6.4420 3.7670 -4.0629 41 1 6.7096 4.6568 -6.5928 42 1 8.2211 5.7275 -9.3693 43 1 4.0113 3.2994 -0.4353 44 1 2.6710 3.8520 -1.4840 45 1 4.2567 -0.9604 -0.6455 46 1 4.0421 -1.7187 0.9910 47 1 3.6835 -3.7698 -0.3015 48 1 3.1395 -2.8310 -1.7602 49 1 1.7344 -3.0511 1.0008 50 1 0.9592 -2.8636 -0.6305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190023389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:02 Heat of formation + Delta-G solvation = -39.616412 kcal Electronic energy + Delta-G solvation = -29092.749410 eV Core-core repulsion = 25120.410874 eV Total energy + Delta-G solvation = -3972.338536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48003 -40.41634 -39.53638 -38.84364 -36.75915 -35.77401 -34.09649 -33.26286 -31.84935 -30.46411 -28.83443 -27.64696 -26.98398 -26.41971 -25.66965 -24.17325 -23.04329 -21.50187 -20.98219 -20.80209 -19.83692 -19.10862 -18.00444 -17.60571 -17.48939 -16.64954 -16.56868 -16.45707 -16.27090 -16.05943 -15.77358 -15.25027 -15.15897 -14.90348 -14.57255 -14.25890 -14.17149 -13.97009 -13.81566 -13.62749 -13.45180 -13.34837 -13.24109 -13.08679 -12.96462 -12.90365 -12.63144 -12.50793 -12.40134 -12.25822 -12.12175 -11.97693 -11.84824 -11.82020 -11.45010 -11.39956 -10.86375 -10.28190 -9.98020 -9.83032 -9.73777 -9.28235 -8.45146 -5.93034 0.73170 1.37087 1.42644 1.42862 1.56234 1.85471 2.07686 2.29744 2.74665 3.15379 3.22017 3.38337 3.46771 3.60123 3.62024 3.81172 3.98872 4.01907 4.13360 4.23388 4.27839 4.31026 4.37889 4.42356 4.51482 4.53817 4.55690 4.65579 4.70860 4.73527 4.75173 4.75734 4.79138 4.82584 4.93495 5.00504 5.01936 5.08129 5.11101 5.18255 5.22174 5.29740 5.39102 5.43438 5.77208 5.83342 6.03491 6.15743 6.37486 6.63082 6.96423 7.15633 7.59164 8.15418 8.72443 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.002089 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.731529 B =13400.887246 C =13980.997136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.159 4.159 3 C 0.575 3.425 4 O -0.589 6.589 5 N -0.610 5.610 6 C 0.109 3.891 7 C -0.121 4.121 8 C 0.074 3.926 9 H 0.067 0.933 10 N -0.522 5.522 11 C 0.024 3.976 12 C 0.060 3.940 13 C 0.442 3.558 14 O -0.615 6.615 15 N -0.574 5.574 16 C -0.329 4.329 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.116 3.884 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.092 4.092 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.106 0.894 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 -22.396 12.749 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C 0.365 3.635 4 O -0.470 6.470 5 N -0.342 5.342 6 C -0.013 4.013 7 C -0.159 4.159 8 C -0.035 4.035 9 H 0.085 0.915 10 N -0.247 5.247 11 C -0.124 4.124 12 C -0.071 4.071 13 C 0.230 3.770 14 O -0.501 6.501 15 N -0.212 5.212 16 C -0.458 4.458 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.814 3.186 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.007 4.007 25 C -0.116 4.116 26 C -0.158 4.158 27 C -0.163 4.163 28 C -0.129 4.129 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.124 0.876 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.197 -21.302 13.290 27.099 hybrid contribution 1.344 0.796 -0.285 1.588 sum -8.853 -20.506 13.005 25.845 Atomic orbital electron populations 1.20562 0.87728 1.03056 1.03564 1.20334 0.97251 0.89526 1.09032 1.18620 0.77640 0.85688 0.81523 1.90783 1.61077 1.62338 1.32805 1.48541 1.57247 1.19053 1.09393 1.22194 1.02337 0.96141 0.80672 1.22761 0.99085 0.96921 0.97085 1.22765 0.97579 0.89481 0.93632 0.91481 1.61554 1.47196 1.09257 1.06692 1.22445 0.97249 0.97244 0.95425 1.21739 0.97100 0.95352 0.92907 1.20745 0.82455 0.91011 0.82807 1.90475 1.48433 1.41186 1.69969 1.41922 1.43643 1.13294 1.22348 1.19657 1.28658 0.91343 1.06186 0.90442 1.25986 0.95608 1.02013 0.97668 1.69666 1.30963 1.30980 1.24509 0.84910 0.78188 0.77551 0.77933 1.19949 1.19743 1.19598 1.22101 0.95634 0.85579 0.97400 1.23399 0.98400 0.94781 0.95029 1.22343 0.93202 0.98299 1.01916 1.22645 0.96142 0.96782 1.00700 1.22247 0.99122 0.88983 1.02509 0.89425 0.89389 0.92938 0.89542 0.89535 0.89990 0.87513 0.92028 0.90870 0.95220 0.86519 0.91425 0.76971 0.91360 0.91671 0.91389 0.91723 0.88740 0.89135 0.88849 0.87625 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.96 71.24 0.71 -0.61 16 2 C -0.16 -3.01 4.94 -18.70 -0.09 -3.10 16 3 C 0.57 15.20 7.12 86.57 0.62 15.81 16 4 O -0.59 -20.96 17.34 -4.07 -0.07 -21.03 16 5 N -0.61 -14.05 3.33 -816.05 -2.71 -16.77 16 6 C 0.11 1.74 6.46 86.73 0.56 2.30 16 7 C -0.12 -2.19 5.61 31.78 0.18 -2.01 16 8 C 0.07 1.75 2.71 46.31 0.13 1.87 16 9 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 10 N -0.52 -16.31 4.40 -893.47 -3.93 -20.24 16 11 C 0.02 0.79 8.98 127.69 1.15 1.94 16 12 C 0.06 1.96 5.35 85.56 0.46 2.42 16 13 C 0.44 20.51 7.51 87.66 0.66 21.17 16 14 O -0.61 -33.43 13.89 -3.06 -0.04 -33.48 16 15 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 16 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 17 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 18 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 19 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 20 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.12 2.99 5.08 86.86 0.44 3.43 16 25 C -0.12 -1.69 6.64 -17.17 -0.11 -1.81 16 26 C -0.12 -1.58 7.83 30.06 0.24 -1.35 16 27 C -0.13 -0.96 8.17 30.95 0.25 -0.71 16 28 C -0.09 -0.75 7.81 30.17 0.24 -0.52 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.09 1.10 7.70 -2.39 -0.02 1.08 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 35 H 0.11 1.48 7.91 -2.38 -0.02 1.46 16 36 H 0.06 2.50 5.88 -2.39 -0.01 2.49 16 37 H 0.07 2.17 6.76 -2.39 -0.02 2.15 16 38 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.12 3.20 7.01 -2.39 -0.02 3.19 16 40 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 41 H 0.40 18.76 7.90 -92.71 -0.73 18.02 16 42 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.06 1.83 7.79 -2.39 -0.02 1.81 16 44 H 0.07 1.95 8.12 -2.39 -0.02 1.94 16 45 H 0.06 0.95 7.70 -2.39 -0.02 0.93 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -73.96 405.42 0.83 -73.13 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.20 Total: 31.72 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.69 Total: 20.99 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -7.98 Total: -116.09 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.11 Total: -54.50 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.96 0.83 -73.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190023389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.517 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds