Wall clock time and date at job start Tue Mar 31 2020 19:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47106 * 120.00065 * 2 1 4 4 O 1.21612 * 119.99757 * 280.92540 * 3 2 1 5 5 N 1.34770 * 120.00197 * 100.91495 * 3 2 1 6 6 C 1.46506 * 120.00285 * 355.42504 * 5 3 2 7 7 C 1.46501 * 120.00323 * 175.41896 * 5 3 2 8 8 C 1.53008 * 109.46947 * 90.00071 * 7 5 3 9 9 H 1.09005 * 112.77848 * 75.81507 * 8 7 5 10 10 C 1.53509 * 113.47678 * 206.62016 * 8 7 5 11 11 C 1.53518 * 83.57092 * 140.79311 * 10 8 7 12 12 N 1.47476 * 87.93437 * 333.97633 * 11 10 8 13 13 C 1.46898 * 111.00036 * 138.70024 * 12 11 10 14 14 C 1.50707 * 109.46797 * 91.52664 * 13 12 11 15 15 O 1.21287 * 120.00095 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99589 * 180.02562 * 14 13 12 17 17 C 1.37106 * 119.99577 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00446 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99803 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99595 * 179.72307 * 19 17 16 22 22 H 1.48504 * 109.46595 * 180.27918 * 21 19 17 23 23 H 1.48494 * 109.47680 * 300.27824 * 21 19 17 24 24 H 1.48504 * 109.47270 * 60.28315 * 21 19 17 25 25 C 1.32988 * 120.00272 * 179.97438 * 2 1 3 26 26 C 1.51406 * 136.31801 * 179.62901 * 25 2 1 27 27 C 1.53377 * 87.51976 * 206.05869 * 26 25 2 28 28 C 1.51411 * 136.31776 * 0.02562 * 25 2 1 29 29 H 1.08999 * 109.47216 * 85.06643 * 1 2 3 30 30 H 1.09011 * 109.47080 * 205.06959 * 1 2 3 31 31 H 1.08998 * 109.47221 * 325.06250 * 1 2 3 32 32 H 1.08997 * 109.46968 * 275.08225 * 6 5 3 33 33 H 1.09006 * 109.46448 * 35.08386 * 6 5 3 34 34 H 1.08997 * 109.47223 * 155.08227 * 6 5 3 35 35 H 1.09005 * 109.47203 * 330.00972 * 7 5 3 36 36 H 1.09001 * 109.47739 * 210.00404 * 7 5 3 37 37 H 1.09002 * 114.17188 * 27.15389 * 10 8 7 38 38 H 1.08996 * 114.34741 * 254.44876 * 10 8 7 39 39 H 1.09002 * 113.47215 * 219.20975 * 11 10 8 40 40 H 1.09001 * 113.52889 * 88.75368 * 11 10 8 41 41 H 1.08994 * 109.46978 * 331.52954 * 13 12 11 42 42 H 1.08998 * 109.47039 * 211.52437 * 13 12 11 43 43 H 0.96998 * 120.00514 * 359.97438 * 16 14 13 44 44 H 0.97005 * 120.00123 * 359.71761 * 20 19 17 45 45 H 1.09006 * 113.56290 * 320.63824 * 26 25 2 46 46 H 1.09004 * 113.56464 * 91.37620 * 26 25 2 47 47 H 1.08999 * 113.97184 * 220.28735 * 27 26 25 48 48 H 1.09004 * 113.70894 * 88.80558 * 27 26 25 49 49 H 1.08994 * 113.55706 * 268.62546 * 28 25 2 50 50 H 1.08999 * 113.56006 * 39.35464 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3736 1.9003 -1.0341 5 7 2.7708 1.7471 1.1460 6 6 2.5280 1.0455 2.4091 7 6 3.5881 2.9628 1.1288 8 6 2.6903 4.1839 1.3386 9 1 2.3730 4.3015 2.3748 10 6 3.2549 5.4713 0.7220 11 6 1.7887 5.7303 0.3479 12 7 1.5807 4.2705 0.3710 13 6 0.3004 3.9311 1.0063 14 6 -0.7763 3.8504 -0.0450 15 8 -0.5039 4.0550 -1.2091 16 7 -2.0420 3.5510 0.3083 17 6 -3.0214 3.4771 -0.6482 18 1 -2.7787 3.6584 -1.6849 19 6 -4.3262 3.1678 -0.2841 20 7 -4.6215 2.9467 0.9771 21 14 -5.6622 3.0747 -1.5864 22 1 -6.9575 2.7372 -0.9433 23 1 -5.7772 4.3867 -2.2724 24 1 -5.3140 2.0262 -2.5786 25 6 2.1719 -1.1517 0.0005 26 6 3.6250 -1.5770 -0.0061 27 6 3.1708 -2.8820 -0.6719 28 6 1.8139 -2.6228 0.0007 29 1 -0.3633 0.0884 -1.0238 30 1 -0.3634 -0.9309 0.4355 31 1 -0.3633 0.8424 0.5885 32 1 1.5789 1.3756 2.8313 33 1 2.4908 -0.0285 2.2267 34 1 3.3338 1.2676 3.1087 35 1 4.0956 3.0459 0.1677 36 1 4.3282 2.9145 1.9276 37 1 3.9111 5.3064 -0.1326 38 1 3.6616 6.1761 1.4473 39 1 1.6644 6.1711 -0.6412 40 1 1.2301 6.2608 1.1190 41 1 0.0409 4.7000 1.7339 42 1 0.3888 2.9688 1.5105 43 1 -2.2598 3.3870 1.2392 44 1 -3.9278 2.9953 1.6534 45 1 4.2567 -0.9604 -0.6456 46 1 4.0421 -1.7188 0.9910 47 1 3.6836 -3.7698 -0.3017 48 1 3.1395 -2.8309 -1.7603 49 1 1.7338 -3.0515 0.9996 50 1 0.9604 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234151861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:36 Heat of formation + Delta-G solvation = 20.693569 kcal Electronic energy + Delta-G solvation = -30997.342867 eV Core-core repulsion = 27027.619568 eV Total energy + Delta-G solvation = -3969.723299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53810 -39.49941 -38.23536 -37.73036 -35.18375 -34.14392 -32.94964 -31.20196 -30.46964 -28.91832 -26.78933 -26.21334 -25.56093 -25.49238 -23.82295 -23.54833 -22.14770 -19.98750 -19.55402 -19.44897 -17.81330 -17.67283 -16.57728 -16.30559 -16.02324 -15.83618 -15.68815 -15.50195 -14.66882 -14.36841 -14.28374 -13.78822 -13.65529 -13.60050 -13.30947 -13.01994 -12.76302 -12.63879 -12.57815 -12.43755 -12.39992 -12.05979 -11.97914 -11.61866 -11.59605 -11.50213 -11.23770 -11.11374 -11.02291 -10.90477 -10.77900 -10.45629 -10.42419 -10.15921 -9.76809 -9.42883 -9.39141 -8.78527 -8.62695 -8.33499 -8.07169 -7.91859 -6.65796 -3.77728 1.82508 2.96573 3.19296 3.37208 3.39527 3.59690 3.97096 4.06951 4.30994 4.38183 4.44900 4.54999 4.57872 4.82964 4.88688 4.98846 5.01573 5.08891 5.17372 5.27523 5.29239 5.34561 5.40102 5.44653 5.47420 5.52248 5.57914 5.61014 5.66861 5.69183 5.71705 5.73286 5.79559 5.88660 5.96119 5.99036 6.04666 6.10388 6.12680 6.15968 6.29724 6.44580 6.57589 6.75748 6.84961 7.31930 7.55821 7.91576 8.18106 8.54031 8.71516 8.93891 9.58881 10.03693 10.77858 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.004556 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.338630 B = 6144.381234 C = 8359.985088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.116 4.116 3 C 0.561 3.439 4 O -0.488 6.488 5 N -0.616 5.616 6 C 0.081 3.919 7 C 0.139 3.861 8 C 0.001 3.999 9 H 0.072 0.928 10 C -0.135 4.135 11 C 0.001 3.999 12 N -0.410 5.410 13 C 0.011 3.989 14 C 0.453 3.547 15 O -0.556 6.556 16 N -0.584 5.584 17 C -0.375 4.375 18 H 0.096 0.904 19 C -0.011 4.011 20 N -0.906 5.906 21 Si 1.089 2.911 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.136 4.136 28 C -0.099 4.099 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.372 0.628 44 H 0.259 0.741 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.921 -7.082 7.910 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.347 3.653 4 O -0.360 6.360 5 N -0.351 5.351 6 C -0.063 4.063 7 C 0.016 3.984 8 C -0.110 4.110 9 H 0.090 0.910 10 C -0.173 4.173 11 C -0.128 4.128 12 N -0.132 5.132 13 C -0.121 4.121 14 C 0.238 3.762 15 O -0.436 6.436 16 N -0.224 5.224 17 C -0.504 4.504 18 H 0.114 0.886 19 C -0.212 4.212 20 N -0.546 5.546 21 Si 0.915 3.085 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.174 4.174 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.204 0.796 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.111 0.889 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.512 -7.309 5.633 18.915 hybrid contribution 1.192 0.673 1.864 2.313 sum 17.703 -6.636 7.497 20.338 Atomic orbital electron populations 1.20547 0.88835 1.02360 1.03594 1.20582 0.96681 0.91229 1.03365 1.18229 0.78677 0.84814 0.83544 1.90900 1.56181 1.57493 1.31388 1.47657 1.53147 1.26853 1.07444 1.21750 1.01121 0.97748 0.85664 1.21407 0.91782 0.82350 1.02887 1.23903 0.95265 0.95772 0.96081 0.91024 1.23136 0.97112 0.96086 1.00943 1.23744 0.95015 0.91562 1.02444 1.68958 1.00205 1.11095 1.32910 1.22500 0.92461 1.01062 0.96110 1.19576 0.82830 0.84148 0.89598 1.90561 1.81205 1.52766 1.19103 1.41933 1.07328 1.63827 1.09310 1.20485 0.89578 1.48509 0.91835 0.88581 1.26400 0.98245 0.95639 1.00961 1.70902 1.35876 1.47436 1.00422 0.83167 0.74855 0.76988 0.73481 1.20506 1.21148 1.21086 1.22798 0.97095 0.93731 1.00515 1.22101 0.93984 0.96898 1.01044 1.22619 0.96960 0.97332 1.00442 1.22114 0.98188 0.92041 1.01223 0.90387 0.91452 0.91477 0.93139 0.91101 0.91320 0.89505 0.90690 0.88770 0.90929 0.89485 0.92026 0.93189 0.90324 0.79570 0.92994 0.91211 0.89143 0.90831 0.89839 0.88879 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.01 36.00 0.36 -1.26 16 2 C -0.12 -1.80 4.38 -102.85 -0.45 -2.25 16 3 C 0.56 9.71 6.53 -12.67 -0.08 9.63 16 4 O -0.49 -10.88 15.90 5.27 0.08 -10.79 16 5 N -0.62 -8.22 2.61 -182.96 -0.48 -8.70 16 6 C 0.08 0.79 10.27 59.85 0.61 1.41 16 7 C 0.14 1.69 5.60 -4.04 -0.02 1.67 16 8 C 0.00 0.01 3.36 -71.44 -0.24 -0.23 16 9 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 10 C -0.13 -1.61 8.00 -26.20 -0.21 -1.82 16 11 C 0.00 0.02 7.69 -7.56 -0.06 -0.04 16 12 N -0.41 -7.44 4.22 -237.96 -1.00 -8.45 16 13 C 0.01 0.21 5.26 -4.97 -0.03 0.19 16 14 C 0.45 11.44 7.83 -10.98 -0.09 11.36 16 15 O -0.56 -16.51 16.01 5.55 0.09 -16.42 16 16 N -0.58 -15.23 5.28 -10.96 -0.06 -15.29 16 17 C -0.37 -10.85 9.68 -14.93 -0.14 -10.99 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C -0.01 -0.30 5.50 -17.47 -0.10 -0.40 16 20 N -0.91 -25.75 13.68 55.50 0.76 -24.99 16 21 Si 1.09 25.06 29.92 -169.99 -5.09 19.98 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.14 -1.77 5.62 -100.48 -0.56 -2.33 16 26 C -0.10 -1.05 7.83 -27.56 -0.22 -1.27 16 27 C -0.14 -1.23 8.17 -26.21 -0.21 -1.44 16 28 C -0.10 -0.98 7.62 -27.41 -0.21 -1.19 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.07 0.94 7.78 -51.92 -0.40 0.53 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.07 0.67 6.23 -51.93 -0.32 0.34 16 34 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 35 H 0.09 1.22 7.22 -51.93 -0.38 0.84 16 36 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 37 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.06 0.90 7.44 -51.93 -0.39 0.52 16 41 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 42 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 43 H 0.37 8.98 6.73 -40.82 -0.27 8.70 16 44 H 0.26 7.09 6.78 -40.82 -0.28 6.81 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 407.89 15.07 6.15 6.15 Total: -1.00 -37.30 407.89 -9.48 -46.77 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.29 Total: 10.71 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.64 Total: 1.04 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.78 Total: -57.42 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: 0.17 Total: -27.22 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.98 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.30 -9.48 -46.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234151861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.468 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds