Wall clock time and date at job start Tue Mar 31 2020 19:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.47106 * 120.00065 * 2 1 4 4 O 1.21612 * 119.99757 * 280.92540 * 3 2 1 5 5 N 1.34770 * 120.00197 * 100.91495 * 3 2 1 6 6 C 1.46506 * 120.00285 * 355.42504 * 5 3 2 7 7 C 1.46501 * 120.00323 * 175.41896 * 5 3 2 8 8 C 1.53008 * 109.46947 * 90.00071 * 7 5 3 9 9 H 1.09005 * 112.77848 * 75.81507 * 8 7 5 10 10 C 1.53509 * 113.47678 * 206.62016 * 8 7 5 11 11 C 1.53518 * 83.57092 * 140.79311 * 10 8 7 12 12 N 1.47476 * 87.93437 * 333.97633 * 11 10 8 13 13 C 1.46898 * 111.00036 * 138.70024 * 12 11 10 14 14 C 1.50707 * 109.46797 * 91.52664 * 13 12 11 15 15 O 1.21287 * 120.00095 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99589 * 180.02562 * 14 13 12 17 17 C 1.37106 * 119.99577 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00446 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99803 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99595 * 179.72307 * 19 17 16 22 22 H 1.48504 * 109.46595 * 180.27918 * 21 19 17 23 23 H 1.48494 * 109.47680 * 300.27824 * 21 19 17 24 24 H 1.48504 * 109.47270 * 60.28315 * 21 19 17 25 25 C 1.32988 * 120.00272 * 179.97438 * 2 1 3 26 26 C 1.51406 * 136.31801 * 179.62901 * 25 2 1 27 27 C 1.53377 * 87.51976 * 206.05869 * 26 25 2 28 28 C 1.51411 * 136.31776 * 0.02562 * 25 2 1 29 29 H 1.08999 * 109.47216 * 85.06643 * 1 2 3 30 30 H 1.09011 * 109.47080 * 205.06959 * 1 2 3 31 31 H 1.08998 * 109.47221 * 325.06250 * 1 2 3 32 32 H 1.08997 * 109.46968 * 275.08225 * 6 5 3 33 33 H 1.09006 * 109.46448 * 35.08386 * 6 5 3 34 34 H 1.08997 * 109.47223 * 155.08227 * 6 5 3 35 35 H 1.09005 * 109.47203 * 330.00972 * 7 5 3 36 36 H 1.09001 * 109.47739 * 210.00404 * 7 5 3 37 37 H 1.09002 * 114.17188 * 27.15389 * 10 8 7 38 38 H 1.08996 * 114.34741 * 254.44876 * 10 8 7 39 39 H 1.09002 * 113.47215 * 219.20975 * 11 10 8 40 40 H 1.09001 * 113.52889 * 88.75368 * 11 10 8 41 41 H 1.08994 * 109.46978 * 331.52954 * 13 12 11 42 42 H 1.08998 * 109.47039 * 211.52437 * 13 12 11 43 43 H 0.96998 * 120.00514 * 359.97438 * 16 14 13 44 44 H 0.97005 * 120.00123 * 359.71761 * 20 19 17 45 45 H 1.09006 * 113.56290 * 320.63824 * 26 25 2 46 46 H 1.09004 * 113.56464 * 91.37620 * 26 25 2 47 47 H 1.08999 * 113.97184 * 220.28735 * 27 26 25 48 48 H 1.09004 * 113.70894 * 88.80558 * 27 26 25 49 49 H 1.08994 * 113.55706 * 268.62546 * 28 25 2 50 50 H 1.08999 * 113.56006 * 39.35464 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3736 1.9003 -1.0341 5 7 2.7708 1.7471 1.1460 6 6 2.5280 1.0455 2.4091 7 6 3.5881 2.9628 1.1288 8 6 2.6903 4.1839 1.3386 9 1 2.3730 4.3015 2.3748 10 6 3.2549 5.4713 0.7220 11 6 1.7887 5.7303 0.3479 12 7 1.5807 4.2705 0.3710 13 6 0.3004 3.9311 1.0063 14 6 -0.7763 3.8504 -0.0450 15 8 -0.5039 4.0550 -1.2091 16 7 -2.0420 3.5510 0.3083 17 6 -3.0214 3.4771 -0.6482 18 1 -2.7787 3.6584 -1.6849 19 6 -4.3262 3.1678 -0.2841 20 7 -4.6215 2.9467 0.9771 21 14 -5.6622 3.0747 -1.5864 22 1 -6.9575 2.7372 -0.9433 23 1 -5.7772 4.3867 -2.2724 24 1 -5.3140 2.0262 -2.5786 25 6 2.1719 -1.1517 0.0005 26 6 3.6250 -1.5770 -0.0061 27 6 3.1708 -2.8820 -0.6719 28 6 1.8139 -2.6228 0.0007 29 1 -0.3633 0.0884 -1.0238 30 1 -0.3634 -0.9309 0.4355 31 1 -0.3633 0.8424 0.5885 32 1 1.5789 1.3756 2.8313 33 1 2.4908 -0.0285 2.2267 34 1 3.3338 1.2676 3.1087 35 1 4.0956 3.0459 0.1677 36 1 4.3282 2.9145 1.9276 37 1 3.9111 5.3064 -0.1326 38 1 3.6616 6.1761 1.4473 39 1 1.6644 6.1711 -0.6412 40 1 1.2301 6.2608 1.1190 41 1 0.0409 4.7000 1.7339 42 1 0.3888 2.9688 1.5105 43 1 -2.2598 3.3870 1.2392 44 1 -3.9278 2.9953 1.6534 45 1 4.2567 -0.9604 -0.6456 46 1 4.0421 -1.7188 0.9910 47 1 3.6836 -3.7698 -0.3017 48 1 3.1395 -2.8309 -1.7603 49 1 1.7338 -3.0515 0.9996 50 1 0.9604 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234151861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:35 Heat of formation + Delta-G solvation = -5.853557 kcal Electronic energy + Delta-G solvation = -30998.494037 eV Core-core repulsion = 27027.619568 eV Total energy + Delta-G solvation = -3970.874469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75756 -40.70027 -39.77810 -39.17117 -36.41971 -36.26396 -34.10576 -33.22743 -32.02143 -29.99292 -27.83459 -27.34695 -27.16104 -26.44168 -25.38008 -24.91223 -23.11746 -21.54376 -21.00262 -20.53301 -19.97036 -18.72934 -18.12505 -17.59219 -17.29725 -17.10669 -17.01032 -16.38343 -16.24555 -16.11071 -15.61748 -15.50073 -15.21265 -14.69560 -14.61495 -14.33976 -14.26192 -13.87410 -13.80234 -13.40203 -13.38025 -13.33075 -13.18484 -12.91720 -12.90211 -12.74510 -12.65146 -12.52879 -12.32989 -12.04859 -11.94611 -11.87992 -11.86691 -11.58527 -11.51538 -11.37054 -10.63953 -10.44736 -10.10234 -9.82035 -9.70989 -9.38839 -8.93544 -6.05960 0.75823 1.49755 1.50096 1.72599 1.78774 2.00796 2.14485 2.37973 2.76986 3.14377 3.25271 3.36239 3.50569 3.52530 3.76759 3.77301 3.94485 4.00779 4.13135 4.20207 4.20778 4.23886 4.28493 4.34157 4.37261 4.41116 4.51291 4.55883 4.65120 4.70712 4.73015 4.74387 4.75132 4.87851 4.91280 4.93142 4.94676 4.97945 5.05048 5.19948 5.22153 5.38017 5.40509 5.59556 5.71139 5.79301 5.94432 6.09597 6.45466 6.58269 6.77263 7.34327 7.43572 7.96585 8.54152 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.004556 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.338630 B = 6144.381234 C = 8359.985088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.161 4.161 3 C 0.558 3.442 4 O -0.558 6.558 5 N -0.607 5.607 6 C 0.075 3.925 7 C 0.135 3.865 8 C 0.007 3.993 9 H 0.100 0.900 10 C -0.109 4.109 11 C -0.011 4.011 12 N -0.454 5.454 13 C 0.030 3.970 14 C 0.449 3.551 15 O -0.608 6.608 16 N -0.588 5.588 17 C -0.405 4.405 18 H 0.063 0.937 19 C -0.038 4.038 20 N -0.914 5.914 21 Si 1.130 2.870 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.276 1.276 25 C -0.121 4.121 26 C -0.101 4.101 27 C -0.129 4.129 28 C -0.098 4.098 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.381 0.619 44 H 0.258 0.742 45 H 0.053 0.947 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.124 0.876 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.798 -8.661 11.184 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.164 4.164 3 C 0.346 3.654 4 O -0.435 6.435 5 N -0.340 5.340 6 C -0.067 4.067 7 C 0.012 3.988 8 C -0.103 4.103 9 H 0.118 0.882 10 C -0.147 4.147 11 C -0.140 4.140 12 N -0.177 5.177 13 C -0.102 4.102 14 C 0.236 3.764 15 O -0.492 6.492 16 N -0.228 5.228 17 C -0.534 4.534 18 H 0.081 0.919 19 C -0.236 4.236 20 N -0.553 5.553 21 Si 0.950 3.050 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.166 4.166 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.215 0.785 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.141 0.859 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.142 0.858 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.416 -8.897 9.004 22.346 hybrid contribution 0.697 1.094 0.868 1.561 sum 19.112 -7.803 9.872 22.883 Atomic orbital electron populations 1.20344 0.90548 1.02452 1.00670 1.20317 0.95610 0.91915 1.08572 1.18572 0.78210 0.84942 0.83678 1.90855 1.59034 1.59558 1.34013 1.47729 1.51784 1.26924 1.07569 1.22007 1.02487 0.97771 0.84391 1.21609 0.92174 0.81543 1.03477 1.24046 0.93181 0.96710 0.96376 0.88240 1.23028 0.94292 0.96052 1.01317 1.23852 0.98458 0.90516 1.01154 1.68960 1.00565 1.12557 1.35575 1.22299 0.91369 1.02437 0.94100 1.20725 0.83480 0.81861 0.90311 1.90522 1.82128 1.54664 1.21931 1.41942 1.07528 1.64071 1.09286 1.20403 0.91126 1.50688 0.91225 0.91898 1.27705 0.99656 0.94092 1.02179 1.70968 1.35989 1.47638 1.00729 0.82687 0.72955 0.77687 0.71703 1.19090 1.20099 1.20211 1.23363 0.99195 0.94209 0.95442 1.22274 0.91927 0.96901 1.02625 1.22603 0.96285 0.97898 0.99786 1.22319 0.98581 0.89637 1.02911 0.94524 0.88807 0.94228 0.93492 0.90619 0.87386 0.92094 0.85633 0.89585 0.86781 0.92998 0.90612 0.90817 0.89208 0.78480 0.93149 0.92816 0.85920 0.87665 0.91002 0.85832 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.98 10.01 71.23 0.71 -2.27 16 2 C -0.16 -5.18 4.38 -18.70 -0.08 -5.26 16 3 C 0.56 20.00 6.53 86.57 0.57 20.56 16 4 O -0.56 -26.69 15.90 -4.07 -0.06 -26.75 16 5 N -0.61 -15.42 2.61 -851.03 -2.22 -17.64 16 6 C 0.08 1.24 10.27 127.77 1.31 2.55 16 7 C 0.13 2.98 5.60 86.38 0.48 3.46 16 8 C 0.01 0.17 3.36 42.18 0.14 0.31 16 9 H 0.10 1.88 7.91 -2.38 -0.02 1.87 16 10 C -0.11 -2.39 8.00 30.94 0.25 -2.14 16 11 C -0.01 -0.34 7.69 83.57 0.64 0.30 16 12 N -0.45 -16.78 4.22 -906.78 -3.83 -20.60 16 13 C 0.03 1.17 5.26 85.56 0.45 1.62 16 14 C 0.45 23.94 7.83 87.66 0.69 24.62 16 15 O -0.61 -38.91 16.01 -3.05 -0.05 -38.95 16 16 N -0.59 -32.16 5.28 -306.98 -1.62 -33.79 16 17 C -0.41 -24.64 9.68 84.04 0.81 -23.82 16 18 H 0.06 4.19 7.16 -2.91 -0.02 4.17 16 19 C -0.04 -2.16 5.50 84.93 0.47 -1.69 16 20 N -0.91 -52.22 13.68 21.66 0.30 -51.93 16 21 Si 1.13 51.06 29.92 68.60 2.05 53.11 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.12 -2.91 5.62 -17.17 -0.10 -3.01 16 26 C -0.10 -1.79 7.83 30.06 0.24 -1.55 16 27 C -0.13 -1.93 8.17 30.93 0.25 -1.68 16 28 C -0.10 -1.67 7.62 30.15 0.23 -1.44 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.69 7.78 -2.38 -0.02 2.67 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.08 1.18 6.23 -2.38 -0.01 1.17 16 34 H 0.11 0.94 7.83 -2.39 -0.02 0.93 16 35 H 0.06 1.70 7.22 -2.38 -0.02 1.68 16 36 H 0.13 1.52 7.86 -2.39 -0.02 1.50 16 37 H 0.09 2.05 7.94 -2.39 -0.02 2.03 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.15 7.44 -2.39 -0.02 2.14 16 41 H 0.07 2.50 7.35 -2.39 -0.02 2.48 16 42 H 0.09 3.27 7.86 -2.39 -0.02 3.25 16 43 H 0.38 19.07 6.73 -92.71 -0.62 18.44 16 44 H 0.26 14.28 6.78 -92.70 -0.63 13.65 16 45 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -90.48 407.89 2.08 -88.40 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.45 Total: 37.61 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.06 Total: 10.56 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -7.37 Total: -123.96 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -0.11 Total: -65.71 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -90.48 2.08 -88.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234151861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.544 kcal (2) G-P(sol) polarization free energy of solvation -90.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds