Wall clock time and date at job start Tue Mar 31 2020 19:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50701 * 109.46717 * 2 1 4 4 C 1.38630 * 120.75389 * 269.97491 * 3 2 1 5 5 C 1.38552 * 119.35062 * 180.02562 * 4 3 2 6 6 N 1.31522 * 120.90718 * 0.02562 * 5 4 3 7 7 C 1.32716 * 121.63728 * 359.68697 * 6 5 4 8 8 C 1.48180 * 119.72288 * 180.28521 * 7 6 5 9 9 O 1.21512 * 119.99876 * 172.90236 * 8 7 6 10 10 N 1.34773 * 119.99706 * 352.90493 * 8 7 6 11 11 C 1.46504 * 120.00329 * 2.14283 * 10 8 7 12 12 C 1.46497 * 119.99909 * 182.13394 * 10 8 7 13 13 C 1.53004 * 109.46825 * 90.00439 * 12 10 8 14 14 O 1.42892 * 109.47414 * 65.00248 * 13 12 10 15 15 C 1.42903 * 114.00132 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46984 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46707 * 65.00012 * 16 15 14 18 18 C 1.46502 * 120.00059 * 269.99506 * 17 16 15 19 19 C 1.36938 * 120.00123 * 90.00391 * 17 16 15 20 20 H 1.07998 * 120.00481 * 24.74272 * 19 17 16 21 21 C 1.38813 * 119.99806 * 204.75232 * 19 17 16 22 22 N 1.31622 * 120.00396 * 6.29049 * 21 19 17 23 23 Si 1.86804 * 119.99958 * 186.28985 * 21 19 17 24 24 H 1.48503 * 109.46705 * 60.00111 * 23 21 19 25 25 H 1.48498 * 109.47000 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47216 * 299.99799 * 23 21 19 27 27 C 1.38584 * 120.75894 * 90.00196 * 3 2 1 28 28 H 1.08993 * 109.47160 * 300.00098 * 1 2 3 29 29 H 1.08998 * 109.46815 * 60.00547 * 1 2 3 30 30 H 1.09004 * 109.46679 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47160 * 239.99901 * 2 1 3 32 32 H 1.08998 * 109.46815 * 119.99453 * 2 1 3 33 33 H 1.08005 * 120.32290 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.54710 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47555 * 83.72607 * 11 10 8 36 36 H 1.09004 * 109.46743 * 203.73502 * 11 10 8 37 37 H 1.09008 * 109.46325 * 323.72617 * 11 10 8 38 38 H 1.09000 * 109.47317 * 209.99745 * 12 10 8 39 39 H 1.09000 * 109.47636 * 330.00497 * 12 10 8 40 40 H 1.09006 * 109.46658 * 185.00131 * 13 12 10 41 41 H 1.08996 * 109.47073 * 304.99801 * 13 12 10 42 42 H 1.08998 * 109.46548 * 299.99579 * 15 14 13 43 43 H 1.08998 * 109.47249 * 59.99829 * 15 14 13 44 44 H 1.08999 * 109.46525 * 184.99651 * 16 15 14 45 45 H 1.08996 * 109.47247 * 305.00295 * 16 15 14 46 46 H 1.09002 * 109.47081 * 95.04409 * 18 17 16 47 47 H 1.09004 * 109.47298 * 215.04630 * 18 17 16 48 48 H 1.09003 * 109.46985 * 335.04147 * 18 17 16 49 49 H 0.96995 * 120.00401 * 180.02562 * 22 21 19 50 50 H 1.08008 * 120.46903 * 359.94962 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2691 2.0890 -1.1914 5 6 2.7312 3.3948 -1.1574 6 7 2.9475 4.0053 -0.0128 7 6 2.7283 3.4034 1.1496 8 6 2.9805 4.1336 2.4141 9 8 2.6612 3.6373 3.4763 10 7 3.5639 5.3481 2.3860 11 6 3.9061 5.9670 1.1030 12 6 3.8558 6.0496 3.6385 13 6 5.2576 5.6704 4.1207 14 8 6.2278 6.1464 3.1859 15 6 7.5776 5.8426 3.5436 16 6 8.5248 6.3962 2.4771 17 7 8.4465 7.8590 2.4665 18 6 7.4744 8.5343 1.6032 19 6 9.2821 8.5952 3.2633 20 1 10.2278 8.1819 3.5817 21 6 8.9136 9.8728 3.6620 22 7 7.7121 10.3296 3.3793 23 14 10.1231 10.9438 4.5999 24 1 11.3363 11.1623 3.7717 25 1 9.4913 12.2522 4.9064 26 1 10.5035 10.2684 5.8666 27 6 2.2686 2.0891 1.1909 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0950 1.5966 -2.1367 34 1 2.9171 3.9182 -2.0837 35 1 3.0295 6.4725 0.6981 36 1 4.7072 6.6912 1.2511 37 1 4.2365 5.1975 0.4051 38 1 3.8077 7.1258 3.4720 39 1 3.1228 5.7656 4.3935 40 1 5.4407 6.1216 5.0959 41 1 5.3328 4.5861 4.2021 42 1 7.8091 6.2970 4.5069 43 1 7.7007 4.7618 3.6127 44 1 9.5458 6.0885 2.7032 45 1 8.2368 6.0098 1.4995 46 1 6.5708 8.7504 2.1732 47 1 7.9024 9.4661 1.2335 48 1 7.2268 7.8887 0.7605 49 1 7.4547 11.2224 3.6576 50 1 2.0946 1.5992 2.1376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264106047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:34 Heat of formation + Delta-G solvation = -6.547022 kcal Electronic energy + Delta-G solvation = -29365.332670 eV Core-core repulsion = 25394.428131 eV Total energy + Delta-G solvation = -3970.904540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96705 -39.20623 -37.40448 -35.76481 -35.33755 -34.75297 -31.87952 -31.37871 -30.78724 -29.68301 -27.89169 -26.42293 -25.67069 -24.95595 -24.48652 -22.92716 -22.70005 -21.86497 -20.24830 -19.44508 -17.41505 -16.98279 -16.71173 -16.37930 -16.01482 -15.80621 -15.53513 -15.21054 -14.97694 -14.58296 -14.36416 -14.12512 -13.99482 -13.69090 -13.53311 -13.27440 -12.94110 -12.88629 -12.66100 -12.35066 -12.22153 -12.14389 -11.95516 -11.64335 -11.44746 -11.35143 -11.24470 -10.88671 -10.75837 -10.70619 -10.46018 -10.24658 -10.00518 -9.88552 -9.86837 -9.75985 -9.44933 -9.23789 -8.84125 -8.45884 -8.42274 -6.59603 -5.61245 -3.09215 0.45775 0.91567 2.67067 3.02297 3.42714 3.47772 3.48448 3.65655 3.96693 4.19570 4.34011 4.36439 4.57455 4.68066 4.72766 4.81557 4.87545 4.99534 5.17723 5.37036 5.42001 5.43129 5.45168 5.49976 5.51292 5.62705 5.65884 5.72202 5.74718 5.78452 5.93320 5.96875 5.98841 6.07786 6.18412 6.24195 6.27900 6.33700 6.56753 6.63709 6.71611 6.85417 7.01147 7.42387 7.56609 7.57534 7.86920 7.95299 8.03939 8.16859 8.51992 9.36213 9.98959 10.50402 11.42405 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.002319 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.286113 B =12071.448650 C =12363.226198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.047 4.047 4 C -0.153 4.153 5 C 0.095 3.905 6 N -0.448 5.448 7 C 0.088 3.912 8 C 0.563 3.437 9 O -0.546 6.546 10 N -0.579 5.579 11 C 0.078 3.922 12 C 0.117 3.883 13 C 0.049 3.951 14 O -0.365 6.365 15 C 0.045 3.955 16 C 0.154 3.846 17 N -0.597 5.597 18 C 0.177 3.823 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.112 4.112 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.163 0.837 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.033 0.967 47 H 0.036 0.964 48 H -0.008 1.008 49 H 0.251 0.749 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 -19.119 -9.382 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.173 4.173 5 C -0.064 4.064 6 N -0.161 5.161 7 C -0.049 4.049 8 C 0.349 3.651 9 O -0.424 6.424 10 N -0.308 5.308 11 C -0.064 4.064 12 C -0.005 4.005 13 C -0.029 4.029 14 O -0.283 6.283 15 C -0.035 4.035 16 C 0.026 3.974 17 N -0.319 5.319 18 C 0.032 3.968 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.010 0.990 49 H 0.061 0.939 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.391 -18.174 -8.938 24.845 hybrid contribution 0.425 -0.264 0.851 0.987 sum -13.966 -18.438 -8.087 24.503 Atomic orbital electron populations 1.21754 0.94062 1.02209 1.02511 1.20597 0.96643 0.91464 1.03675 1.20337 0.95715 0.96786 0.92663 1.22244 1.00100 0.96237 0.98734 1.22983 0.94699 0.92181 0.96498 1.68221 1.13157 1.36689 0.98002 1.21202 0.98727 0.92587 0.92430 1.17955 0.78432 0.81389 0.87303 1.90752 1.53518 1.67658 1.30502 1.47677 1.57304 1.17066 1.08786 1.22419 1.00499 0.99819 0.83651 1.21650 0.95106 0.97811 0.85933 1.22745 0.89304 0.97529 0.93338 1.87948 1.14859 1.79142 1.46389 1.23443 0.82850 0.95878 1.01323 1.20876 0.95217 0.86001 0.95298 1.43842 1.41850 0.98904 1.47351 1.20702 0.93002 0.93340 0.89743 1.19148 0.97266 0.97313 1.24728 0.91776 1.25098 0.96002 0.99012 0.99424 1.70061 1.17689 1.17436 1.49787 0.86377 0.80449 0.79876 0.80026 1.21161 1.21692 1.21114 1.21971 0.97534 0.94287 0.99496 0.92252 0.92400 0.91898 0.90312 0.90256 0.84497 0.81936 0.93169 0.90284 0.88030 0.88910 0.88899 0.92827 0.94238 0.93516 0.96108 0.92592 0.93936 0.94875 0.94571 0.98960 0.93894 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.42 16 2 C -0.09 -0.50 6.11 -27.88 -0.17 -0.67 16 3 C -0.05 -0.39 5.17 -104.35 -0.54 -0.93 16 4 C -0.15 -1.13 9.82 -39.32 -0.39 -1.52 16 5 C 0.09 0.83 11.18 -17.57 -0.20 0.63 16 6 N -0.45 -5.34 6.04 -9.80 -0.06 -5.40 16 7 C 0.09 1.16 6.62 -83.00 -0.55 0.61 16 8 C 0.56 8.81 7.66 -12.18 -0.09 8.72 16 9 O -0.55 -9.61 15.91 5.35 0.09 -9.52 16 10 N -0.58 -8.94 2.84 -182.56 -0.52 -9.46 16 11 C 0.08 1.13 9.07 59.85 0.54 1.67 16 12 C 0.12 1.83 5.80 -4.04 -0.02 1.81 16 13 C 0.05 0.85 6.28 37.16 0.23 1.08 16 14 O -0.36 -7.34 8.84 -35.23 -0.31 -7.66 16 15 C 0.04 0.90 6.28 37.16 0.23 1.13 16 16 C 0.15 3.30 6.11 -4.04 -0.02 3.27 16 17 N -0.60 -15.44 2.89 -181.12 -0.52 -15.96 16 18 C 0.18 4.52 8.60 59.85 0.51 5.03 16 19 C -0.25 -7.12 9.67 -15.06 -0.15 -7.26 16 20 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.00 0.08 5.23 -17.43 -0.09 -0.01 16 22 N -0.90 -26.72 10.47 55.49 0.58 -26.14 16 23 Si 0.90 22.18 29.56 -169.99 -5.02 17.15 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C -0.11 -1.24 9.33 -39.06 -0.36 -1.60 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 32 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.30 7.25 -51.93 -0.38 0.92 16 37 H 0.10 1.43 5.26 -52.10 -0.27 1.16 16 38 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 39 H 0.09 1.37 7.39 -51.93 -0.38 0.98 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 45 H 0.04 0.85 7.86 -51.93 -0.41 0.45 16 46 H 0.03 0.91 7.34 -51.93 -0.38 0.53 16 47 H 0.04 0.99 7.27 -51.93 -0.38 0.61 16 48 H -0.01 -0.19 7.84 -51.93 -0.41 -0.59 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.15 1.57 7.66 -52.48 -0.40 1.17 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -33.27 408.27 -8.77 -42.04 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.46 Total: -2.76 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.69 Total: 11.55 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.52 Total: -56.96 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.23 Total: -17.18 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.27 -8.77 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264106047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.496 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds