Wall clock time and date at job start Tue Mar 31 2020 19:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47103 * 119.99943 * 2 1 4 4 O 1.21607 * 119.99825 * 179.97438 * 3 2 1 5 5 N 1.34770 * 119.99928 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99974 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47331 * 180.02562 * 6 5 3 8 8 H 1.09003 * 110.64176 * 303.30136 * 7 6 5 9 9 C 1.54591 * 110.72400 * 66.45374 * 7 6 5 10 10 C 1.53992 * 105.14229 * 140.31675 * 9 7 6 11 11 N 1.47911 * 107.05630 * 1.22506 * 10 9 7 12 12 C 1.46895 * 110.99951 * 214.15421 * 11 10 9 13 13 C 1.50702 * 109.46965 * 176.64514 * 12 11 10 14 14 O 1.21290 * 120.00155 * 6.16052 * 13 12 11 15 15 N 1.34774 * 119.99684 * 186.15564 * 13 12 11 16 16 C 1.37095 * 119.99699 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00502 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00213 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47025 * 89.99911 * 20 18 16 22 22 H 1.48501 * 109.46968 * 209.99638 * 20 18 16 23 23 H 1.48500 * 109.47088 * 329.99642 * 20 18 16 24 24 C 1.48530 * 105.81878 * 334.66824 * 11 10 9 25 25 C 1.32991 * 120.00074 * 180.02562 * 2 1 3 26 26 C 1.51405 * 136.31947 * 179.62589 * 25 2 1 27 27 C 1.53375 * 87.52181 * 206.05770 * 26 25 2 28 28 C 1.51408 * 136.31371 * 0.02562 * 25 2 1 29 29 H 1.08994 * 109.47512 * 89.99973 * 1 2 3 30 30 H 1.09003 * 109.46902 * 210.00241 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99149 * 1 2 3 32 32 H 0.97000 * 120.00120 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47281 * 59.99685 * 6 5 3 34 34 H 1.08999 * 109.47142 * 300.00004 * 6 5 3 35 35 H 1.08999 * 110.31380 * 21.39740 * 9 7 6 36 36 H 1.09002 * 110.30904 * 259.23509 * 9 7 6 37 37 H 1.08991 * 109.92296 * 241.87079 * 10 9 7 38 38 H 1.09002 * 110.08250 * 120.66465 * 10 9 7 39 39 H 1.08999 * 109.47086 * 296.64576 * 12 11 10 40 40 H 1.09006 * 109.47072 * 56.64503 * 12 11 10 41 41 H 0.97000 * 120.00206 * 0.02562 * 15 13 12 42 42 H 0.96993 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.08994 * 110.66953 * 157.64049 * 24 11 10 44 44 H 1.08996 * 110.66754 * 280.77570 * 24 11 10 45 45 H 1.08999 * 113.55972 * 320.64260 * 26 25 2 46 46 H 1.09003 * 113.56096 * 91.37120 * 26 25 2 47 47 H 1.08996 * 113.97084 * 220.29055 * 27 26 25 48 48 H 1.09004 * 113.59730 * 88.79255 * 27 26 25 49 49 H 1.09001 * 113.55879 * 268.62045 * 28 25 2 50 50 H 1.08991 * 113.56486 * 39.36206 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3011 3.7098 0.0011 7 6 1.3069 4.8728 0.0023 8 1 0.6312 4.8015 -0.8501 9 6 0.5129 4.9124 1.3281 10 6 0.3953 6.4064 1.6821 11 7 1.0593 7.1627 0.5982 12 6 1.7160 8.3674 1.1227 13 6 2.4490 9.0662 0.0067 14 8 2.3360 8.6705 -1.1343 15 7 3.2301 10.1309 0.2765 16 6 3.8965 10.7669 -0.7389 17 1 3.7953 10.4151 -1.7549 18 6 4.7022 11.8644 -0.4607 19 7 4.8250 12.2929 0.7755 20 14 5.6097 12.7314 -1.8443 21 1 4.7543 13.8126 -2.3960 22 1 6.8698 13.3163 -1.3195 23 1 5.9264 11.7546 -2.9170 24 6 2.0521 6.2312 0.0040 25 6 2.1720 -1.1517 -0.0005 26 6 3.6250 -1.5772 -0.0075 27 6 3.1708 -2.8815 -0.6744 28 6 1.8138 -2.6228 -0.0016 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 0.5987 2.4411 0.0005 33 1 2.9278 3.7680 -0.8888 34 1 2.9278 3.7672 0.8911 35 1 1.0547 4.3799 2.1097 36 1 -0.4769 4.4774 1.1894 37 1 0.8934 6.6035 2.6313 38 1 -0.6540 6.6943 1.7468 39 1 0.9649 9.0381 1.5400 40 1 2.4242 8.0852 1.9018 41 1 3.3207 10.4472 1.1890 42 1 5.3871 13.0592 0.9697 43 1 2.3029 6.5336 -1.0127 44 1 2.9478 6.1778 0.6227 45 1 4.2566 -0.9600 -0.6465 46 1 4.0421 -1.7197 0.9894 47 1 3.6835 -3.7696 -0.3050 48 1 3.1398 -2.8274 -1.7627 49 1 1.7337 -3.0525 0.9969 50 1 0.9605 -2.8630 -0.6357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267293105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:49 Heat of formation + Delta-G solvation = -32.800381 kcal Electronic energy + Delta-G solvation = -28244.971576 eV Core-core repulsion = 24272.928605 eV Total energy + Delta-G solvation = -3972.042971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.29049 -39.33283 -38.54281 -37.56338 -35.07853 -33.92219 -33.54181 -31.79267 -31.13850 -29.33105 -27.10598 -26.92373 -25.91101 -25.35275 -24.02988 -22.99218 -21.23392 -20.55703 -20.31082 -19.16807 -18.44757 -17.84447 -16.76169 -16.56156 -16.14814 -15.91459 -15.49258 -15.15400 -15.07776 -14.66311 -14.43080 -14.28225 -13.89545 -13.72921 -13.69436 -13.36170 -12.97623 -12.81874 -12.79276 -12.68697 -12.32224 -12.25661 -12.01749 -11.94847 -11.70864 -11.49404 -11.33056 -11.20969 -11.03174 -11.02283 -10.81533 -10.74837 -10.57211 -10.38148 -10.20920 -9.82223 -9.47303 -9.31145 -9.03631 -8.41281 -8.01573 -7.91451 -6.40831 -3.81556 1.07914 2.98472 3.10772 3.18799 3.27453 3.33343 3.91223 4.01681 4.06134 4.14434 4.25889 4.36637 4.58702 4.61166 4.72220 4.75739 4.79805 4.91669 5.14355 5.17449 5.20281 5.23978 5.26254 5.27163 5.32725 5.35842 5.42808 5.48933 5.51971 5.68772 5.72873 5.73335 5.75717 5.80803 5.86320 5.87806 5.93616 5.97006 6.10110 6.22488 6.28432 6.33159 6.37595 6.54372 7.18629 7.26505 7.38780 7.56174 8.07084 8.11249 8.62488 9.18936 9.55117 10.06774 10.76905 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.001862 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.236012 B =15035.582299 C =16019.445429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.168 4.168 3 C 0.554 3.446 4 O -0.540 6.540 5 N -0.724 5.724 6 C 0.129 3.871 7 C -0.106 4.106 8 H 0.090 0.910 9 C -0.125 4.125 10 C 0.033 3.967 11 N -0.493 5.493 12 C 0.037 3.963 13 C 0.442 3.558 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.049 3.951 25 C -0.070 4.070 26 C -0.103 4.103 27 C -0.142 4.142 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.110 0.890 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -26.898 3.859 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.171 4.171 3 C 0.343 3.657 4 O -0.419 6.419 5 N -0.376 5.376 6 C 0.005 3.995 7 C -0.125 4.125 8 H 0.108 0.892 9 C -0.164 4.164 10 C -0.095 4.095 11 N -0.217 5.217 12 C -0.095 4.095 13 C 0.228 3.772 14 O -0.463 6.463 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.079 4.079 25 C -0.072 4.072 26 C -0.140 4.140 27 C -0.180 4.180 28 C -0.142 4.142 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.117 0.883 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.338 -26.772 2.782 28.490 hybrid contribution 0.587 0.676 0.701 1.137 sum -8.751 -26.096 3.483 27.743 Atomic orbital electron populations 1.20672 0.90504 1.02881 1.02498 1.20456 0.95826 0.91334 1.09489 1.18237 0.87228 0.83804 0.76478 1.90787 1.13530 1.87708 1.49838 1.45935 1.10425 1.05694 1.75554 1.21381 0.94226 0.81147 1.02721 1.22376 0.97219 0.94310 0.98630 0.89203 1.22479 1.00401 0.96417 0.97058 1.22909 1.00337 0.92669 0.93620 1.64533 1.26820 1.04292 1.26060 1.22086 0.97790 0.93368 0.96229 1.19709 0.84010 0.83806 0.89704 1.90485 1.66744 1.66966 1.22099 1.41865 1.40961 1.26481 1.10696 1.19701 1.22757 1.09714 0.90645 0.87889 1.25265 0.97972 0.97326 0.97395 1.69609 1.39918 1.26443 1.18339 0.85856 0.78543 0.79379 0.80508 1.20404 1.20954 1.19416 1.23270 0.92742 0.88799 1.03042 1.23258 0.98197 0.93694 0.92047 1.22183 0.94019 0.95900 1.01915 1.22718 0.96576 0.98236 1.00435 1.22292 0.98588 0.91584 1.01759 0.91061 0.91209 0.91539 0.76502 0.90946 0.91365 0.91433 0.91213 0.93957 0.90459 0.89158 0.93446 0.77495 0.91885 0.87239 0.94111 0.89549 0.88536 0.90420 0.89751 0.88257 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.57 36.01 0.34 -0.30 16 2 C -0.17 -1.56 6.00 -102.84 -0.62 -2.18 16 3 C 0.55 6.72 7.75 -12.67 -0.10 6.62 16 4 O -0.54 -8.57 15.15 5.27 0.08 -8.49 16 5 N -0.72 -7.38 5.35 -61.49 -0.33 -7.71 16 6 C 0.13 1.53 5.00 -4.04 -0.02 1.51 16 7 C -0.11 -1.26 3.13 -88.76 -0.28 -1.54 16 8 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.13 -1.28 6.20 -25.38 -0.16 -1.44 16 10 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 11 N -0.49 -8.19 5.11 -231.89 -1.18 -9.37 16 12 C 0.04 0.67 5.30 -4.98 -0.03 0.64 16 13 C 0.44 10.47 7.41 -10.99 -0.08 10.39 16 14 O -0.58 -15.49 13.87 5.55 0.08 -15.42 16 15 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 20 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.05 0.80 5.03 -1.90 -0.01 0.79 16 25 C -0.07 -0.62 6.60 -100.48 -0.66 -1.28 16 26 C -0.10 -0.91 6.99 -27.56 -0.19 -1.10 16 27 C -0.14 -0.88 8.17 -26.20 -0.21 -1.10 16 28 C -0.11 -0.62 7.71 -27.41 -0.21 -0.83 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.34 7.91 -51.93 -0.41 -0.07 16 31 H 0.07 0.33 6.70 -51.93 -0.35 -0.02 16 32 H 0.40 3.03 6.43 -40.82 -0.26 2.77 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.05 0.79 7.99 -51.93 -0.41 0.38 16 41 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.11 2.14 6.43 -51.93 -0.33 1.80 16 44 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 45 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -33.36 402.77 -10.40 -43.76 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.28 Total: 10.75 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.48 Total: 2.58 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.85 Total: -55.44 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.16 Total: -23.90 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.36 -10.40 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267293105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.958 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds