Wall clock time and date at job start Tue Mar 31 2020 19:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47103 * 119.99943 * 2 1 4 4 O 1.21607 * 119.99825 * 179.97438 * 3 2 1 5 5 N 1.34770 * 119.99928 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99974 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47331 * 180.02562 * 6 5 3 8 8 H 1.09003 * 110.64176 * 303.30136 * 7 6 5 9 9 C 1.54591 * 110.72400 * 66.45374 * 7 6 5 10 10 C 1.53992 * 105.14229 * 140.31675 * 9 7 6 11 11 N 1.47911 * 107.05630 * 1.22506 * 10 9 7 12 12 C 1.46895 * 110.99951 * 214.15421 * 11 10 9 13 13 C 1.50702 * 109.46965 * 176.64514 * 12 11 10 14 14 O 1.21290 * 120.00155 * 6.16052 * 13 12 11 15 15 N 1.34774 * 119.99684 * 186.15564 * 13 12 11 16 16 C 1.37095 * 119.99699 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00502 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00213 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47025 * 89.99911 * 20 18 16 22 22 H 1.48501 * 109.46968 * 209.99638 * 20 18 16 23 23 H 1.48500 * 109.47088 * 329.99642 * 20 18 16 24 24 C 1.48530 * 105.81878 * 334.66824 * 11 10 9 25 25 C 1.32991 * 120.00074 * 180.02562 * 2 1 3 26 26 C 1.51405 * 136.31947 * 179.62589 * 25 2 1 27 27 C 1.53375 * 87.52181 * 206.05770 * 26 25 2 28 28 C 1.51408 * 136.31371 * 0.02562 * 25 2 1 29 29 H 1.08994 * 109.47512 * 89.99973 * 1 2 3 30 30 H 1.09003 * 109.46902 * 210.00241 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99149 * 1 2 3 32 32 H 0.97000 * 120.00120 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.47281 * 59.99685 * 6 5 3 34 34 H 1.08999 * 109.47142 * 300.00004 * 6 5 3 35 35 H 1.08999 * 110.31380 * 21.39740 * 9 7 6 36 36 H 1.09002 * 110.30904 * 259.23509 * 9 7 6 37 37 H 1.08991 * 109.92296 * 241.87079 * 10 9 7 38 38 H 1.09002 * 110.08250 * 120.66465 * 10 9 7 39 39 H 1.08999 * 109.47086 * 296.64576 * 12 11 10 40 40 H 1.09006 * 109.47072 * 56.64503 * 12 11 10 41 41 H 0.97000 * 120.00206 * 0.02562 * 15 13 12 42 42 H 0.96993 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.08994 * 110.66953 * 157.64049 * 24 11 10 44 44 H 1.08996 * 110.66754 * 280.77570 * 24 11 10 45 45 H 1.08999 * 113.55972 * 320.64260 * 26 25 2 46 46 H 1.09003 * 113.56096 * 91.37120 * 26 25 2 47 47 H 1.08996 * 113.97084 * 220.29055 * 27 26 25 48 48 H 1.09004 * 113.59730 * 88.79255 * 27 26 25 49 49 H 1.09001 * 113.55879 * 268.62045 * 28 25 2 50 50 H 1.08991 * 113.56486 * 39.36206 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2739 0.0005 5 7 1.5687 2.4411 0.0005 6 6 2.3011 3.7098 0.0011 7 6 1.3069 4.8728 0.0023 8 1 0.6312 4.8015 -0.8501 9 6 0.5129 4.9124 1.3281 10 6 0.3953 6.4064 1.6821 11 7 1.0593 7.1627 0.5982 12 6 1.7160 8.3674 1.1227 13 6 2.4490 9.0662 0.0067 14 8 2.3360 8.6705 -1.1343 15 7 3.2301 10.1309 0.2765 16 6 3.8965 10.7669 -0.7389 17 1 3.7953 10.4151 -1.7549 18 6 4.7022 11.8644 -0.4607 19 7 4.8250 12.2929 0.7755 20 14 5.6097 12.7314 -1.8443 21 1 4.7543 13.8126 -2.3960 22 1 6.8698 13.3163 -1.3195 23 1 5.9264 11.7546 -2.9170 24 6 2.0521 6.2312 0.0040 25 6 2.1720 -1.1517 -0.0005 26 6 3.6250 -1.5772 -0.0075 27 6 3.1708 -2.8815 -0.6744 28 6 1.8138 -2.6228 -0.0016 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5140 32 1 0.5987 2.4411 0.0005 33 1 2.9278 3.7680 -0.8888 34 1 2.9278 3.7672 0.8911 35 1 1.0547 4.3799 2.1097 36 1 -0.4769 4.4774 1.1894 37 1 0.8934 6.6035 2.6313 38 1 -0.6540 6.6943 1.7468 39 1 0.9649 9.0381 1.5400 40 1 2.4242 8.0852 1.9018 41 1 3.3207 10.4472 1.1890 42 1 5.3871 13.0592 0.9697 43 1 2.3029 6.5336 -1.0127 44 1 2.9478 6.1778 0.6227 45 1 4.2566 -0.9600 -0.6465 46 1 4.0421 -1.7197 0.9894 47 1 3.6835 -3.7696 -0.3050 48 1 3.1398 -2.8274 -1.7627 49 1 1.7337 -3.0525 0.9969 50 1 0.9605 -2.8630 -0.6357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267293105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:48 Heat of formation + Delta-G solvation = -56.680096 kcal Electronic energy + Delta-G solvation = -28246.007078 eV Core-core repulsion = 24272.928605 eV Total energy + Delta-G solvation = -3973.078473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20396 -40.64496 -39.50076 -38.99031 -36.25511 -35.84545 -34.30270 -33.34654 -32.73292 -30.38686 -28.57274 -27.48449 -26.85687 -26.38453 -25.57499 -23.74515 -22.39285 -21.42164 -21.30325 -20.99005 -19.88720 -19.24359 -17.94456 -17.46861 -17.26608 -16.89591 -16.61876 -16.53082 -16.19499 -16.19375 -15.82052 -15.53182 -15.18150 -14.87509 -14.61988 -14.51341 -14.09439 -13.91975 -13.68723 -13.52967 -13.33229 -13.28669 -13.20018 -12.93807 -12.88572 -12.85754 -12.46985 -12.44015 -12.39157 -12.15892 -12.07704 -11.93328 -11.88181 -11.52709 -11.47550 -11.42887 -10.70433 -10.27317 -10.23031 -10.02093 -9.73590 -9.32964 -8.48091 -5.96682 0.34993 1.36376 1.40003 1.52789 2.03165 2.10604 2.23976 2.27471 2.84346 3.18641 3.29821 3.38081 3.56675 3.68532 3.72107 3.82167 3.86192 4.00931 4.22971 4.27046 4.29335 4.31969 4.32534 4.42464 4.46468 4.57574 4.64060 4.73425 4.74468 4.75627 4.79872 4.81899 4.85132 4.96028 5.00340 5.03720 5.07915 5.08952 5.22348 5.27258 5.35154 5.37936 5.39478 5.40990 5.73388 5.84662 5.96082 6.10855 6.56500 6.59024 7.11413 7.22899 7.54428 8.10268 8.69379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.001862 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.236012 B =15035.582299 C =16019.445429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.181 4.181 3 C 0.545 3.455 4 O -0.589 6.589 5 N -0.708 5.708 6 C 0.138 3.862 7 C -0.089 4.089 8 H 0.095 0.905 9 C -0.115 4.115 10 C 0.031 3.969 11 N -0.512 5.512 12 C 0.049 3.951 13 C 0.439 3.561 14 O -0.614 6.614 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.048 3.952 25 C -0.082 4.082 26 C -0.119 4.119 27 C -0.134 4.134 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.416 0.584 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.054 0.946 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.118 0.882 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -28.614 5.031 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.335 3.665 4 O -0.471 6.471 5 N -0.361 5.361 6 C 0.013 3.987 7 C -0.108 4.108 8 H 0.114 0.886 9 C -0.153 4.153 10 C -0.096 4.096 11 N -0.236 5.236 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.500 6.500 15 N -0.211 5.211 16 C -0.462 4.462 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.081 4.081 25 C -0.083 4.083 26 C -0.156 4.156 27 C -0.172 4.172 28 C -0.126 4.126 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.136 0.864 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.640 -28.489 3.983 31.032 hybrid contribution 1.323 1.189 0.329 1.809 sum -10.318 -27.300 4.313 29.501 Atomic orbital electron populations 1.20728 0.87668 1.04274 1.03431 1.20599 0.97609 0.89756 1.10408 1.18878 0.86911 0.85158 0.75527 1.90766 1.15748 1.88422 1.52168 1.45753 1.11113 1.04574 1.74673 1.21131 0.94165 0.82162 1.01220 1.22179 0.96711 0.91558 1.00386 0.88634 1.22479 1.01839 0.95304 0.95643 1.23053 1.00712 0.93324 0.92551 1.64499 1.26537 1.04362 1.28204 1.21970 0.98177 0.94113 0.94017 1.20757 0.83011 0.82877 0.90751 1.90468 1.67630 1.67664 1.24281 1.41936 1.41621 1.27219 1.10356 1.19656 1.24857 1.11277 0.90442 0.90339 1.26042 0.98082 0.97338 0.99848 1.69669 1.40132 1.26740 1.19574 0.84931 0.77750 0.78123 0.77550 1.19510 1.19531 1.19904 1.23102 0.93261 0.91300 1.00431 1.23707 0.98232 0.95437 0.90971 1.22294 0.94114 0.97380 1.01778 1.22708 0.96957 0.97224 1.00275 1.22306 0.98675 0.88697 1.02939 0.90246 0.89601 0.90388 0.74586 0.93224 0.92367 0.90485 0.87948 0.92985 0.88751 0.86996 0.91738 0.77064 0.91305 0.91518 0.95108 0.92777 0.88391 0.88669 0.89913 0.86443 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.57 71.24 0.68 -0.25 16 2 C -0.18 -3.14 6.00 -18.70 -0.11 -3.26 16 3 C 0.54 13.31 7.75 86.57 0.67 13.98 16 4 O -0.59 -19.77 15.15 -4.05 -0.06 -19.83 16 5 N -0.71 -13.88 5.35 -466.72 -2.49 -16.38 16 6 C 0.14 3.33 5.00 86.38 0.43 3.77 16 7 C -0.09 -2.05 3.13 -9.59 -0.03 -2.08 16 8 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 9 C -0.11 -1.99 6.20 31.47 0.19 -1.79 16 10 C 0.03 0.68 6.70 86.44 0.58 1.26 16 11 N -0.51 -16.57 5.11 -887.57 -4.53 -21.11 16 12 C 0.05 1.73 5.30 85.56 0.45 2.19 16 13 C 0.44 21.38 7.41 87.66 0.65 22.03 16 14 O -0.61 -34.43 13.87 -3.06 -0.04 -34.47 16 15 N -0.57 -30.12 5.29 -306.99 -1.62 -31.75 16 16 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 17 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 19 N -0.92 -50.41 13.05 21.67 0.28 -50.13 16 20 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.05 1.58 5.03 86.65 0.44 2.02 16 25 C -0.08 -1.36 6.60 -17.17 -0.11 -1.47 16 26 C -0.12 -2.14 6.99 30.06 0.21 -1.93 16 27 C -0.13 -1.47 8.17 30.94 0.25 -1.22 16 28 C -0.09 -0.80 7.71 30.15 0.23 -0.57 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.51 7.91 -2.39 -0.02 0.49 16 31 H 0.08 0.49 6.70 -2.39 -0.02 0.48 16 32 H 0.42 5.33 6.43 -92.71 -0.60 4.73 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.08 1.25 7.80 -2.39 -0.02 1.23 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.06 2.09 7.99 -2.38 -0.02 2.07 16 41 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 42 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.07 2.79 6.43 -2.39 -0.02 2.77 16 44 H 0.03 1.06 7.92 -2.39 -0.02 1.04 16 45 H 0.05 1.31 7.49 -2.39 -0.02 1.29 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -76.81 402.77 -1.00 -77.81 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.37 Total: 36.07 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.82 Total: 13.96 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -8.37 Total: -119.36 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.10 Total: -54.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -76.81 -1.00 -77.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267293105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.129 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds